Wall clock time and date at job start Wed Apr 1 2020 03:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46951 * 2 1 4 4 C 1.52994 * 109.47085 * 120.00280 * 2 1 3 5 5 C 1.53001 * 117.50115 * 299.99898 * 4 2 1 6 6 C 1.52999 * 60.03066 * 252.50097 * 5 4 2 7 7 N 1.46505 * 109.46668 * 240.00414 * 2 1 3 8 8 C 1.46498 * 120.00009 * 299.99096 * 7 2 1 9 9 C 1.34775 * 119.99924 * 120.00501 * 7 2 1 10 10 O 1.21349 * 120.00002 * 356.64031 * 9 7 2 11 11 C 1.49444 * 120.00053 * 176.65008 * 9 7 2 12 12 O 1.21356 * 120.00452 * 6.06042 * 11 9 7 13 13 N 1.34777 * 120.00190 * 186.05359 * 11 9 7 14 14 C 1.46501 * 120.00267 * 174.97058 * 13 11 9 15 15 H 1.09001 * 109.47265 * 39.72081 * 14 13 11 16 16 C 1.52995 * 109.47455 * 159.72604 * 14 13 11 17 17 C 1.50696 * 109.47006 * 298.86031 * 16 14 13 18 18 H 1.08005 * 120.00265 * 4.98966 * 17 16 14 19 19 C 1.37878 * 120.00118 * 184.97951 * 17 16 14 20 20 N 1.31513 * 120.00137 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00081 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47141 * 60.00639 * 21 19 17 23 23 H 1.48506 * 109.47218 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47363 * 300.00551 * 21 19 17 25 25 C 1.50707 * 109.47027 * 279.72653 * 14 13 11 26 26 C 1.38232 * 119.99976 * 319.72452 * 25 14 13 27 27 C 1.38242 * 119.99731 * 179.78820 * 26 25 14 28 28 C 1.38234 * 120.00173 * 0.44262 * 27 26 25 29 29 C 1.38240 * 119.99704 * 359.81142 * 28 27 26 30 30 C 1.38235 * 120.00133 * 359.97438 * 29 28 27 31 31 H 1.08999 * 109.47157 * 60.00137 * 1 2 3 32 32 H 1.09001 * 109.46951 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46804 * 299.99491 * 1 2 3 34 34 H 1.08997 * 115.56318 * 85.69184 * 4 2 1 35 35 H 1.09001 * 117.49524 * 0.02562 * 5 4 2 36 36 H 1.08995 * 117.49868 * 144.99784 * 5 4 2 37 37 H 1.09005 * 117.49911 * 107.50266 * 6 5 4 38 38 H 1.09000 * 117.49869 * 252.51544 * 6 5 4 39 39 H 1.09003 * 109.46675 * 95.92011 * 8 7 2 40 40 H 1.09001 * 109.47420 * 215.92178 * 8 7 2 41 41 H 1.09001 * 109.47713 * 335.92349 * 8 7 2 42 42 H 0.96996 * 119.99814 * 354.97636 * 13 11 9 43 43 H 1.09005 * 109.47048 * 58.85811 * 16 14 13 44 44 H 1.08995 * 109.47364 * 178.85861 * 16 14 13 45 45 H 0.97001 * 120.00294 * 179.97438 * 20 19 17 46 46 H 1.08000 * 120.00431 * 359.97438 * 26 25 14 47 47 H 1.08001 * 119.99424 * 180.27363 * 27 26 25 48 48 H 1.07998 * 119.99731 * 179.83444 * 28 27 26 49 49 H 1.08001 * 119.99541 * 180.02562 * 29 28 27 50 50 H 1.07996 * 120.00014 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6358 -0.1496 2.6096 6 6 3.0744 0.0053 2.1124 7 7 2.0183 -0.6906 -1.1963 8 6 1.6645 -2.0931 -1.4281 9 6 2.7932 -0.0356 -2.0834 10 8 3.0363 1.1425 -1.9230 11 6 3.3529 -0.7600 -3.2646 12 8 3.0222 -1.9064 -3.4860 13 7 4.2248 -0.1400 -4.0843 14 6 4.8578 -0.8825 -5.1772 15 1 4.1275 -1.5511 -5.6329 16 6 5.3754 0.1005 -6.2290 17 6 4.2207 0.8888 -6.7912 18 1 3.2304 0.7650 -6.3783 19 6 4.4284 1.7684 -7.8325 20 7 5.6342 1.9190 -8.3355 21 14 2.9969 2.7450 -8.5298 22 1 2.4056 3.5887 -7.4603 23 1 3.4805 3.6121 -9.6342 24 1 1.9665 1.8105 -9.0496 25 6 6.0087 -1.6904 -4.6350 26 6 6.8425 -1.1478 -3.6753 27 6 7.8956 -1.8905 -3.1748 28 6 8.1204 -3.1724 -3.6409 29 6 7.2896 -3.7130 -4.6045 30 6 6.2339 -2.9720 -5.1017 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 2.1272 -1.8044 1.1642 35 1 1.0062 0.7401 2.6146 36 1 1.4566 -0.8567 3.4194 37 1 3.3916 0.9972 1.7904 38 1 3.8417 -0.6002 2.5950 39 1 0.7976 -2.1450 -2.0868 40 1 2.5053 -2.6080 -1.8929 41 1 1.4272 -2.5701 -0.4771 42 1 4.4333 0.7978 -3.9506 43 1 6.0907 0.7821 -5.7685 44 1 5.8642 -0.4508 -7.0322 45 1 5.7803 2.5375 -9.0683 46 1 6.6695 -0.1448 -3.3141 47 1 8.5444 -1.4682 -2.4218 48 1 8.9447 -3.7516 -3.2518 49 1 7.4650 -4.7147 -4.9683 50 1 5.5847 -3.3945 -5.8543 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261404103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:29 Heat of formation + Delta-G solvation = -14.114086 kcal Electronic energy + Delta-G solvation = -30657.377383 eV Core-core repulsion = 26650.655960 eV Total energy + Delta-G solvation = -4006.721423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.69091 -39.31741 -38.37752 -37.55678 -35.81104 -34.88951 -32.73506 -31.15363 -30.89486 -30.49169 -28.87118 -26.98684 -25.76207 -24.76474 -23.19195 -22.51406 -22.31895 -21.97158 -20.40646 -19.79071 -19.45607 -17.53221 -17.20254 -16.77556 -16.17079 -15.98483 -15.85239 -15.30875 -14.92005 -14.67478 -14.61318 -14.48186 -13.96524 -13.75102 -13.43625 -13.25781 -13.03846 -12.85405 -12.72943 -12.58754 -12.54158 -12.38275 -12.16510 -12.12241 -11.66857 -11.58718 -11.22798 -11.13966 -11.01382 -10.89562 -10.73652 -10.67207 -10.63006 -10.44021 -10.26861 -9.79590 -9.38173 -9.04959 -8.76717 -8.59123 -8.52924 -8.44948 -8.23204 -6.09085 -4.13151 1.70701 1.75993 1.76713 2.53422 3.31077 3.35316 3.38727 3.48651 3.55431 3.82152 4.18652 4.34774 4.40753 4.64012 4.71336 4.79920 4.97394 5.13676 5.13932 5.18390 5.22521 5.24411 5.28173 5.33128 5.37288 5.48898 5.49587 5.61755 5.65524 5.74738 5.86501 5.86986 5.87598 5.89352 5.95887 6.08711 6.09446 6.29062 6.38103 6.40721 6.50083 6.76623 6.80705 6.81901 7.03360 7.11909 7.35996 7.46768 7.52587 7.73580 7.86599 8.07579 8.22970 8.45634 8.92144 9.52438 11.01356 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.003834 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.978582 B = 7300.922775 C = 9708.480025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.103 0.897 4 C -0.166 4.166 5 C -0.171 4.171 6 C -0.176 4.176 7 N -0.584 5.584 8 C 0.066 3.934 9 C 0.508 3.492 10 O -0.521 6.521 11 C 0.504 3.496 12 O -0.526 6.526 13 N -0.665 5.665 14 C 0.183 3.817 15 H 0.090 0.910 16 C 0.024 3.976 17 C -0.525 4.525 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.075 4.075 26 C -0.108 4.108 27 C -0.124 4.124 28 C -0.133 4.133 29 C -0.123 4.123 30 C -0.106 4.106 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.109 0.891 41 H 0.061 0.939 42 H 0.415 0.585 43 H 0.024 0.976 44 H 0.042 0.958 45 H 0.263 0.737 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.117 0.883 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 -8.564 18.512 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 H 0.121 0.879 4 C -0.185 4.185 5 C -0.209 4.209 6 C -0.213 4.213 7 N -0.317 5.317 8 C -0.076 4.076 9 C 0.291 3.709 10 O -0.397 6.397 11 C 0.284 3.716 12 O -0.405 6.405 13 N -0.316 5.316 14 C 0.080 3.920 15 H 0.108 0.892 16 C -0.014 4.014 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.076 4.076 26 C -0.126 4.126 27 C -0.142 4.142 28 C -0.151 4.151 29 C -0.141 4.141 30 C -0.124 4.124 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.252 0.748 43 H 0.042 0.958 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.136 0.864 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.135 0.865 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.917 -8.634 18.267 20.580 hybrid contribution -0.637 0.942 -0.376 1.198 sum -4.554 -7.691 17.891 20.000 Atomic orbital electron populations 1.22089 0.94240 1.02650 1.02515 1.20692 0.94172 0.97201 0.81973 0.87925 1.22636 1.04736 0.99795 0.91374 1.22928 0.98357 1.03192 0.96374 1.23051 0.92427 1.02278 1.03504 1.47682 1.49055 1.13435 1.21551 1.22351 1.03823 0.80403 1.01003 1.20463 0.79309 0.87007 0.84132 1.90737 1.58522 1.15261 1.75170 1.19911 0.80837 0.86764 0.84074 1.90610 1.59757 1.17553 1.72545 1.45897 1.41459 1.15207 1.28988 1.20407 0.91111 0.94164 0.86350 0.89184 1.19407 0.96920 0.92930 0.92099 1.21084 0.94606 1.23355 1.17306 0.92348 1.24971 0.95641 0.96853 0.96481 1.69942 1.20623 1.36566 1.25797 0.86647 0.82599 0.80049 0.78703 1.20110 1.21257 1.20199 1.20473 0.96979 0.94347 0.95770 1.20967 0.94856 0.99660 0.97111 1.21051 0.97999 0.94817 1.00338 1.21014 0.99771 0.95887 0.98421 1.21042 0.95716 0.99621 0.97713 1.21001 0.97843 0.93766 0.99805 0.92002 0.92017 0.91266 0.87333 0.88570 0.88675 0.88465 0.88791 0.92357 0.87282 0.92021 0.74841 0.95820 0.94030 0.92745 0.86445 0.86672 0.86787 0.86531 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.03 37.16 0.34 -1.11 16 2 C 0.16 1.81 2.86 -67.93 -0.19 1.62 16 3 H 0.10 1.32 6.66 -51.93 -0.35 0.97 16 4 C -0.17 -1.54 5.13 -90.59 -0.46 -2.01 16 5 C -0.17 -1.27 9.73 -26.73 -0.26 -1.54 16 6 C -0.18 -1.57 10.18 -26.69 -0.27 -1.85 16 7 N -0.58 -7.81 2.76 -174.44 -0.48 -8.29 16 8 C 0.07 0.78 8.51 59.85 0.51 1.29 16 9 C 0.51 8.47 7.74 -11.59 -0.09 8.38 16 10 O -0.52 -9.68 15.82 5.50 0.09 -9.59 16 11 C 0.50 9.09 7.65 -11.59 -0.09 9.00 16 12 O -0.53 -9.80 12.86 5.49 0.07 -9.73 16 13 N -0.67 -12.64 3.90 -55.36 -0.22 -12.86 16 14 C 0.18 3.68 2.15 -69.08 -0.15 3.53 16 15 H 0.09 1.91 7.52 -51.93 -0.39 1.52 16 16 C 0.02 0.57 4.50 -27.89 -0.13 0.44 16 17 C -0.53 -13.97 8.76 -34.44 -0.30 -14.27 16 18 H 0.06 1.55 7.63 -52.48 -0.40 1.15 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 21 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.07 -1.35 4.84 -104.62 -0.51 -1.86 16 26 C -0.11 -1.82 9.32 -39.58 -0.37 -2.19 16 27 C -0.12 -1.83 10.05 -39.58 -0.40 -2.22 16 28 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 29 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 30 C -0.11 -1.76 9.67 -39.58 -0.38 -2.14 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 33 H 0.07 0.52 7.29 -51.93 -0.38 0.14 16 34 H 0.11 0.98 6.67 -51.93 -0.35 0.63 16 35 H 0.10 0.66 7.61 -51.93 -0.39 0.27 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.94 8.05 -51.93 -0.42 0.53 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.11 1.49 5.37 -51.93 -0.28 1.21 16 41 H 0.06 0.56 6.51 -51.93 -0.34 0.22 16 42 H 0.41 8.00 8.02 -40.82 -0.33 7.67 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.12 1.95 7.73 -52.49 -0.41 1.55 16 47 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 48 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 49 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 50 H 0.12 1.90 8.04 -52.49 -0.42 1.48 16 LS Contribution 411.28 15.07 6.20 6.20 Total: -1.00 -30.28 411.28 -10.06 -40.34 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.79 Total: 10.26 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -3.65 Total: -7.69 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.04 Total: -46.09 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.16 Total: -19.32 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.28 -10.06 -40.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261404103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.227 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds