Wall clock time and date at job start Wed Apr 1 2020 03:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46951 * 2 1 4 4 C 1.52994 * 109.47085 * 120.00280 * 2 1 3 5 5 C 1.53001 * 117.50115 * 299.99898 * 4 2 1 6 6 C 1.52999 * 60.03066 * 252.50097 * 5 4 2 7 7 N 1.46505 * 109.46668 * 240.00414 * 2 1 3 8 8 C 1.46498 * 120.00009 * 299.99096 * 7 2 1 9 9 C 1.34775 * 119.99924 * 120.00501 * 7 2 1 10 10 O 1.21349 * 120.00002 * 356.64031 * 9 7 2 11 11 C 1.49444 * 120.00053 * 176.65008 * 9 7 2 12 12 O 1.21356 * 120.00452 * 6.06042 * 11 9 7 13 13 N 1.34777 * 120.00190 * 186.05359 * 11 9 7 14 14 C 1.46501 * 120.00267 * 174.97058 * 13 11 9 15 15 H 1.09001 * 109.47265 * 39.72081 * 14 13 11 16 16 C 1.52995 * 109.47455 * 159.72604 * 14 13 11 17 17 C 1.50696 * 109.47006 * 298.86031 * 16 14 13 18 18 H 1.08005 * 120.00265 * 4.98966 * 17 16 14 19 19 C 1.37878 * 120.00118 * 184.97951 * 17 16 14 20 20 N 1.31513 * 120.00137 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00081 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47141 * 60.00639 * 21 19 17 23 23 H 1.48506 * 109.47218 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47363 * 300.00551 * 21 19 17 25 25 C 1.50707 * 109.47027 * 279.72653 * 14 13 11 26 26 C 1.38232 * 119.99976 * 319.72452 * 25 14 13 27 27 C 1.38242 * 119.99731 * 179.78820 * 26 25 14 28 28 C 1.38234 * 120.00173 * 0.44262 * 27 26 25 29 29 C 1.38240 * 119.99704 * 359.81142 * 28 27 26 30 30 C 1.38235 * 120.00133 * 359.97438 * 29 28 27 31 31 H 1.08999 * 109.47157 * 60.00137 * 1 2 3 32 32 H 1.09001 * 109.46951 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46804 * 299.99491 * 1 2 3 34 34 H 1.08997 * 115.56318 * 85.69184 * 4 2 1 35 35 H 1.09001 * 117.49524 * 0.02562 * 5 4 2 36 36 H 1.08995 * 117.49868 * 144.99784 * 5 4 2 37 37 H 1.09005 * 117.49911 * 107.50266 * 6 5 4 38 38 H 1.09000 * 117.49869 * 252.51544 * 6 5 4 39 39 H 1.09003 * 109.46675 * 95.92011 * 8 7 2 40 40 H 1.09001 * 109.47420 * 215.92178 * 8 7 2 41 41 H 1.09001 * 109.47713 * 335.92349 * 8 7 2 42 42 H 0.96996 * 119.99814 * 354.97636 * 13 11 9 43 43 H 1.09005 * 109.47048 * 58.85811 * 16 14 13 44 44 H 1.08995 * 109.47364 * 178.85861 * 16 14 13 45 45 H 0.97001 * 120.00294 * 179.97438 * 20 19 17 46 46 H 1.08000 * 120.00431 * 359.97438 * 26 25 14 47 47 H 1.08001 * 119.99424 * 180.27363 * 27 26 25 48 48 H 1.07998 * 119.99731 * 179.83444 * 28 27 26 49 49 H 1.08001 * 119.99541 * 180.02562 * 29 28 27 50 50 H 1.07996 * 120.00014 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6358 -0.1496 2.6096 6 6 3.0744 0.0053 2.1124 7 7 2.0183 -0.6906 -1.1963 8 6 1.6645 -2.0931 -1.4281 9 6 2.7932 -0.0356 -2.0834 10 8 3.0363 1.1425 -1.9230 11 6 3.3529 -0.7600 -3.2646 12 8 3.0222 -1.9064 -3.4860 13 7 4.2248 -0.1400 -4.0843 14 6 4.8578 -0.8825 -5.1772 15 1 4.1275 -1.5511 -5.6329 16 6 5.3754 0.1005 -6.2290 17 6 4.2207 0.8888 -6.7912 18 1 3.2304 0.7650 -6.3783 19 6 4.4284 1.7684 -7.8325 20 7 5.6342 1.9190 -8.3355 21 14 2.9969 2.7450 -8.5298 22 1 2.4056 3.5887 -7.4603 23 1 3.4805 3.6121 -9.6342 24 1 1.9665 1.8105 -9.0496 25 6 6.0087 -1.6904 -4.6350 26 6 6.8425 -1.1478 -3.6753 27 6 7.8956 -1.8905 -3.1748 28 6 8.1204 -3.1724 -3.6409 29 6 7.2896 -3.7130 -4.6045 30 6 6.2339 -2.9720 -5.1017 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 2.1272 -1.8044 1.1642 35 1 1.0062 0.7401 2.6146 36 1 1.4566 -0.8567 3.4194 37 1 3.3916 0.9972 1.7904 38 1 3.8417 -0.6002 2.5950 39 1 0.7976 -2.1450 -2.0868 40 1 2.5053 -2.6080 -1.8929 41 1 1.4272 -2.5701 -0.4771 42 1 4.4333 0.7978 -3.9506 43 1 6.0907 0.7821 -5.7685 44 1 5.8642 -0.4508 -7.0322 45 1 5.7803 2.5375 -9.0683 46 1 6.6695 -0.1448 -3.3141 47 1 8.5444 -1.4682 -2.4218 48 1 8.9447 -3.7516 -3.2518 49 1 7.4650 -4.7147 -4.9683 50 1 5.5847 -3.3945 -5.8543 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261404103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:28 Heat of formation + Delta-G solvation = -29.837445 kcal Electronic energy + Delta-G solvation = -30658.059199 eV Core-core repulsion = 26650.655960 eV Total energy + Delta-G solvation = -4007.403239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.01054 -40.58018 -39.53757 -38.68167 -37.18256 -36.12401 -34.72944 -32.59377 -31.78219 -31.70863 -30.59402 -28.07894 -27.24197 -26.09412 -24.36498 -23.80295 -23.32424 -23.15627 -21.65251 -21.20457 -20.44868 -18.90790 -18.57737 -18.37736 -17.67986 -17.17286 -17.13056 -16.63862 -16.40232 -16.16222 -15.77121 -15.47339 -15.22198 -14.92205 -14.76415 -14.47770 -14.23575 -14.20657 -14.08109 -13.82109 -13.72308 -13.58659 -13.37782 -13.28674 -12.96360 -12.95556 -12.64764 -12.50382 -12.37629 -12.32816 -12.16816 -11.89245 -11.86382 -11.62869 -11.39327 -11.35198 -10.98264 -10.62761 -10.38012 -10.18990 -9.80826 -9.76825 -9.54775 -8.22479 -6.32857 0.35662 0.47771 0.54638 1.30024 1.38783 1.40080 1.47960 2.12696 2.38271 2.46898 2.88508 2.95739 3.11665 3.36632 3.60452 3.91996 3.92905 4.01304 4.03815 4.16171 4.19684 4.28709 4.31555 4.33550 4.38476 4.40909 4.59616 4.65484 4.71660 4.73748 4.76067 4.81393 4.89550 4.96175 4.99938 5.09728 5.12901 5.18542 5.21623 5.25912 5.29323 5.38890 5.41053 5.54038 5.60016 5.63411 5.74818 5.79858 5.94332 6.12212 6.17448 6.31033 6.69930 6.79493 6.97811 7.36163 8.88142 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.003834 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.978582 B = 7300.922775 C = 9708.480025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.174 4.174 5 C -0.147 4.147 6 C -0.190 4.190 7 N -0.571 5.571 8 C 0.066 3.934 9 C 0.505 3.495 10 O -0.549 6.549 11 C 0.503 3.497 12 O -0.533 6.533 13 N -0.670 5.670 14 C 0.200 3.800 15 H 0.073 0.927 16 C 0.037 3.963 17 C -0.535 4.535 18 H 0.055 0.945 19 C 0.012 3.988 20 N -0.924 5.924 21 Si 0.955 3.045 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.270 1.270 25 C -0.099 4.099 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.125 4.125 29 C -0.120 4.120 30 C -0.124 4.124 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.411 0.589 43 H 0.005 0.995 44 H 0.016 0.984 45 H 0.265 0.735 46 H 0.109 0.891 47 H 0.142 0.858 48 H 0.152 0.848 49 H 0.148 0.852 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.612 -10.147 20.783 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 H 0.099 0.901 4 C -0.192 4.192 5 C -0.185 4.185 6 C -0.227 4.227 7 N -0.303 5.303 8 C -0.075 4.075 9 C 0.288 3.712 10 O -0.428 6.428 11 C 0.284 3.716 12 O -0.412 6.412 13 N -0.320 5.320 14 C 0.096 3.904 15 H 0.091 0.909 16 C 0.000 4.000 17 C -0.573 4.573 18 H 0.073 0.927 19 C -0.187 4.187 20 N -0.564 5.564 21 Si 0.780 3.220 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.195 1.195 25 C -0.100 4.100 26 C -0.144 4.144 27 C -0.143 4.143 28 C -0.143 4.143 29 C -0.138 4.138 30 C -0.143 4.143 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.247 0.753 43 H 0.024 0.976 44 H 0.034 0.966 45 H 0.074 0.926 46 H 0.127 0.873 47 H 0.160 0.840 48 H 0.170 0.830 49 H 0.166 0.834 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.625 -10.252 20.569 23.443 hybrid contribution -0.392 1.355 -1.008 1.733 sum -5.018 -8.897 19.561 22.068 Atomic orbital electron populations 1.22066 0.92340 1.03654 1.02839 1.20896 0.95574 0.96193 0.81750 0.90069 1.22567 1.05616 0.99881 0.91185 1.23031 0.96746 1.03399 0.95282 1.23088 0.93694 1.01714 1.04215 1.47836 1.47258 1.14016 1.21238 1.22392 1.02950 0.79291 1.02882 1.20195 0.80089 0.86701 0.84262 1.90721 1.60032 1.16180 1.75824 1.20207 0.80344 0.86735 0.84328 1.90608 1.59901 1.17816 1.72865 1.45832 1.42074 1.14977 1.29086 1.19942 0.91584 0.92935 0.85985 0.90858 1.19138 0.95679 0.92893 0.92331 1.21392 0.95099 1.23500 1.17308 0.92663 1.25770 0.98056 0.97925 0.96946 1.70054 1.22490 1.37440 1.26427 0.85660 0.79579 0.78708 0.78078 1.19690 1.20621 1.19543 1.20330 0.97064 0.95202 0.97421 1.21038 0.95952 0.99839 0.97531 1.21394 0.97256 0.95200 1.00457 1.21479 1.00056 0.95505 0.97234 1.21418 0.94479 1.00672 0.97205 1.21179 0.99141 0.93619 1.00331 0.93546 0.90610 0.89110 0.86559 0.87856 0.86706 0.89939 0.88099 0.92142 0.89163 0.88512 0.75306 0.97640 0.96609 0.92641 0.87301 0.84036 0.82994 0.83389 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.03 71.98 0.65 -1.84 16 2 C 0.16 3.36 2.86 44.99 0.13 3.49 16 3 H 0.08 2.11 6.66 -2.39 -0.02 2.09 16 4 C -0.17 -2.85 5.13 -10.77 -0.06 -2.91 16 5 C -0.15 -1.77 9.73 30.59 0.30 -1.47 16 6 C -0.19 -3.16 10.18 30.62 0.31 -2.84 16 7 N -0.57 -15.09 2.76 -824.17 -2.28 -17.36 16 8 C 0.07 1.47 8.51 127.77 1.09 2.56 16 9 C 0.51 17.35 7.74 87.27 0.68 18.02 16 10 O -0.55 -21.29 15.82 -3.24 -0.05 -21.34 16 11 C 0.50 18.90 7.65 87.27 0.67 19.56 16 12 O -0.53 -20.43 12.86 -3.27 -0.04 -20.47 16 13 N -0.67 -27.01 3.90 -447.43 -1.75 -28.75 16 14 C 0.20 8.52 2.15 44.25 0.10 8.62 16 15 H 0.07 3.31 7.52 -2.39 -0.02 3.30 16 16 C 0.04 1.88 4.50 29.84 0.13 2.02 16 17 C -0.54 -29.64 8.76 25.60 0.22 -29.42 16 18 H 0.06 3.03 7.63 -2.91 -0.02 3.01 16 19 C 0.01 0.68 5.46 84.65 0.46 1.14 16 20 N -0.92 -54.92 13.29 21.45 0.28 -54.63 16 21 Si 0.95 44.52 29.54 68.60 2.03 46.54 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 C -0.10 -3.73 4.84 -19.86 -0.10 -3.83 16 26 C -0.13 -4.33 9.32 22.27 0.21 -4.12 16 27 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 28 C -0.12 -3.08 10.05 22.27 0.22 -2.86 16 29 C -0.12 -3.21 10.05 22.27 0.22 -2.99 16 30 C -0.12 -4.16 9.67 22.27 0.22 -3.95 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.04 7.67 -2.39 -0.02 1.03 16 33 H 0.09 1.11 7.29 -2.39 -0.02 1.09 16 34 H 0.12 1.75 6.67 -2.39 -0.02 1.74 16 35 H 0.10 1.11 7.61 -2.39 -0.02 1.10 16 36 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.61 8.05 -2.38 -0.02 1.59 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 2.43 5.37 -2.42 -0.01 2.42 16 41 H 0.10 1.48 6.51 -2.39 -0.02 1.46 16 42 H 0.41 17.03 8.02 -92.71 -0.74 16.28 16 43 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 44 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.11 3.83 7.73 -2.91 -0.02 3.81 16 47 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 48 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 49 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 50 H 0.12 3.92 8.04 -2.91 -0.02 3.89 16 Total: -1.00 -68.10 411.28 4.07 -64.03 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.20 Total: 36.06 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.68 Total: -4.08 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -3.74 Total: -100.74 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.09 Total: -41.81 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -68.10 4.07 -64.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261404103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.193 kcal (2) G-P(sol) polarization free energy of solvation -68.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds