Wall clock time and date at job start Wed Apr 1 2020 02:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46456 * 2 1 4 4 C 1.53039 * 109.46153 * 240.02531 * 2 1 3 5 5 C 1.53185 * 109.31291 * 178.61979 * 4 2 1 6 6 N 1.46928 * 108.78051 * 54.63220 * 5 4 2 7 7 C 1.34776 * 120.63109 * 126.40783 * 6 5 4 8 8 O 1.21547 * 119.99941 * 179.22937 * 7 6 5 9 9 C 1.47847 * 119.99954 * 359.23609 * 7 6 5 10 10 C 1.39600 * 120.13309 * 33.28897 * 9 7 6 11 11 C 1.38000 * 119.89326 * 179.77053 * 10 9 7 12 12 C 1.38132 * 120.10657 * 0.49801 * 11 10 9 13 13 C 1.38756 * 120.27496 * 359.75837 * 12 11 10 14 14 C 1.37704 * 120.18644 * 359.97438 * 13 12 11 15 15 C 1.51122 * 107.25508 * 179.97438 * 13 12 11 16 16 O 1.43928 * 105.95336 * 342.28296 * 15 13 12 17 17 C 1.43918 * 104.97214 * 28.51468 * 16 15 13 18 18 C 1.46918 * 118.73686 * 306.39644 * 6 5 4 19 19 H 1.09004 * 109.58614 * 293.67059 * 18 6 5 20 20 C 1.52998 * 109.58816 * 173.39305 * 18 6 5 21 21 N 1.46505 * 109.47119 * 71.64734 * 20 18 6 22 22 C 1.36933 * 120.00004 * 174.56312 * 21 20 18 23 23 H 1.08006 * 120.00283 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99991 * 180.02562 * 22 21 20 25 25 N 1.31611 * 120.00064 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 120.00047 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46948 * 59.99591 * 26 24 22 28 28 H 1.48492 * 109.46925 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46911 * 299.99700 * 26 24 22 30 30 C 1.53044 * 109.45610 * 119.95704 * 2 1 3 31 31 H 1.08999 * 109.47306 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46863 * 59.97342 * 1 2 3 33 33 H 1.09003 * 109.47119 * 299.97733 * 1 2 3 34 34 H 1.09003 * 109.49342 * 298.56929 * 4 2 1 35 35 H 1.08997 * 109.49515 * 58.63063 * 4 2 1 36 36 H 1.09006 * 109.58828 * 174.42095 * 5 4 2 37 37 H 1.09005 * 109.58663 * 294.69927 * 5 4 2 38 38 H 1.07996 * 120.05317 * 0.02562 * 10 9 7 39 39 H 1.07995 * 119.94552 * 180.25427 * 11 10 9 40 40 H 1.08002 * 120.09714 * 179.97438 * 14 13 12 41 41 H 1.09002 * 110.15254 * 101.40646 * 15 13 12 42 42 H 1.09002 * 110.14765 * 223.15772 * 15 13 12 43 43 H 1.09002 * 110.15500 * 212.34777 * 17 16 15 44 44 H 1.09004 * 110.15124 * 90.60153 * 17 16 15 45 45 H 1.09003 * 109.47312 * 191.64789 * 20 18 6 46 46 H 1.09003 * 109.46898 * 311.65005 * 20 18 6 47 47 H 0.97003 * 119.99853 * 354.56416 * 21 20 18 48 48 H 0.96997 * 120.00010 * 180.02562 * 25 24 22 49 49 H 1.08997 * 109.50156 * 301.33487 * 30 2 1 50 50 H 1.08995 * 109.49928 * 61.43540 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5713 -0.6888 -1.2640 6 7 4.0678 -1.2489 0.0003 7 6 4.9619 -2.2574 0.0005 8 8 5.3756 -2.7026 1.0531 9 6 5.4397 -2.8220 -1.2797 10 6 5.5772 -2.0005 -2.4000 11 6 6.0280 -2.5317 -3.5912 12 6 6.3333 -3.8760 -3.6789 13 6 6.1937 -4.6988 -2.5703 14 6 5.7500 -4.1800 -1.3745 15 6 6.6022 -6.0915 -2.9915 16 8 6.5611 -6.0977 -4.4302 17 6 6.8321 -4.7379 -4.8158 18 6 3.5713 -0.6885 1.2644 19 1 3.9164 0.3402 1.3686 20 6 4.0910 -1.5248 2.4355 21 7 5.5262 -1.2857 2.6073 22 6 6.1908 -1.8419 3.6675 23 1 5.6570 -2.4565 4.3773 24 6 7.5505 -1.6150 3.8306 25 7 8.2010 -0.8657 2.9660 26 14 8.4571 -2.3732 5.2773 27 1 8.3456 -3.8525 5.2110 28 1 9.8886 -1.9822 5.2242 29 1 7.8577 -1.8880 6.5463 30 6 2.0398 -0.7206 1.2503 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5143 -0.8898 33 1 -0.3633 0.5135 0.8902 34 1 1.6978 -1.7558 -1.2380 35 1 1.6568 -0.2214 -2.1397 36 1 3.9417 -1.2850 -2.0981 37 1 3.9143 0.3404 -1.3699 38 1 5.3350 -0.9501 -2.3335 39 1 6.1386 -1.8961 -4.4573 40 1 5.6415 -4.8218 -0.5126 41 1 7.6122 -6.3080 -2.6437 42 1 5.9016 -6.8250 -2.5925 43 1 6.2979 -4.4943 -5.7341 44 1 7.9036 -4.5934 -4.9545 45 1 3.5638 -1.2414 3.3465 46 1 3.9207 -2.5818 2.2309 47 1 6.0056 -0.7334 1.9701 48 1 9.1512 -0.7074 3.0798 49 1 1.6572 -0.2204 2.1399 50 1 1.6977 -1.7554 1.2386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264561141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:45 Heat of formation + Delta-G solvation = 22.643738 kcal Electronic energy + Delta-G solvation = -31470.715683 eV Core-core repulsion = 27465.588198 eV Total energy + Delta-G solvation = -4005.127484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.97659 -40.05062 -37.66764 -36.95897 -34.46824 -33.80459 -32.27411 -31.62728 -30.98168 -29.81900 -28.38930 -27.89719 -25.51969 -25.16965 -23.74648 -22.67710 -22.21582 -21.71654 -21.14447 -20.00184 -19.03122 -17.27874 -16.67337 -16.61131 -16.46065 -15.87479 -15.39432 -15.03124 -14.94764 -14.59968 -14.38418 -14.25564 -13.97826 -13.84849 -13.39704 -13.29869 -13.21415 -12.85686 -12.80996 -12.66439 -12.52359 -12.22810 -12.12083 -11.93922 -11.76317 -11.62378 -11.48580 -11.07406 -10.96105 -10.81738 -10.69834 -10.66765 -10.37711 -10.27672 -10.08565 -9.85226 -9.49069 -8.92722 -8.70079 -8.63478 -8.33177 -8.05753 -6.50099 -5.54262 -2.72933 0.91586 1.26717 3.16945 3.32059 3.55927 3.59540 3.60962 3.75603 3.89195 4.10680 4.49817 4.68069 4.71555 4.74423 4.82621 4.85091 4.89203 5.13456 5.15585 5.19257 5.22654 5.27175 5.33878 5.42228 5.46907 5.52232 5.58549 5.58962 5.65236 5.72943 5.74933 5.78437 5.81355 5.90859 5.94953 6.05374 6.08258 6.11171 6.14578 6.17116 6.21907 6.37092 6.40736 6.54130 6.55148 6.67288 6.80129 6.93961 7.27667 7.87398 7.92619 8.63889 8.90044 9.75190 10.35607 10.70020 11.69635 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007123 B = 0.004708 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3930.098262 B = 5945.856017 C = 9133.471786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.128 4.128 5 C 0.082 3.918 6 N -0.607 5.607 7 C 0.510 3.490 8 O -0.432 6.432 9 C -0.098 4.098 10 C -0.102 4.102 11 C -0.101 4.101 12 C -0.126 4.126 13 C -0.138 4.138 14 C -0.043 4.043 15 C 0.093 3.907 16 O -0.363 6.363 17 C 0.092 3.908 18 C 0.143 3.857 19 H 0.069 0.931 20 C 0.161 3.839 21 N -0.693 5.693 22 C -0.208 4.208 23 H 0.064 0.936 24 C -0.021 4.021 25 N -0.938 5.938 26 Si 0.901 3.099 27 H -0.289 1.289 28 H -0.294 1.294 29 H -0.289 1.289 30 C -0.121 4.121 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.146 0.854 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.017 0.983 46 H 0.037 0.963 47 H 0.380 0.620 48 H 0.250 0.750 49 H 0.073 0.927 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 -1.251 -17.540 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.089 0.911 4 C -0.166 4.166 5 C -0.041 4.041 6 N -0.345 5.345 7 C 0.295 3.705 8 O -0.300 6.300 9 C -0.101 4.101 10 C -0.120 4.120 11 C -0.119 4.119 12 C -0.126 4.126 13 C -0.139 4.139 14 C -0.061 4.061 15 C 0.016 3.984 16 O -0.282 6.282 17 C 0.015 3.985 18 C 0.040 3.960 19 H 0.087 0.913 20 C 0.033 3.967 21 N -0.336 5.336 22 C -0.340 4.340 23 H 0.082 0.918 24 C -0.215 4.215 25 N -0.588 5.588 26 Si 0.734 3.266 27 H -0.217 1.217 28 H -0.220 1.220 29 H -0.216 1.216 30 C -0.160 4.160 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.082 0.918 38 H 0.164 0.836 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.034 0.966 46 H 0.055 0.945 47 H 0.213 0.787 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.015 -1.810 -16.889 20.805 hybrid contribution 0.845 0.102 0.618 1.051 sum -11.171 -1.707 -16.271 19.810 Atomic orbital electron populations 1.21816 0.95310 1.01666 1.01427 1.21124 0.95353 0.99612 0.95007 0.91132 1.21988 0.95589 1.01195 0.97856 1.22465 0.94192 0.99369 0.88095 1.47696 1.44516 1.36174 1.06101 1.18230 0.80960 0.82607 0.88708 1.91288 1.53021 1.56622 1.29078 1.20185 1.01454 0.94040 0.94459 1.21697 0.97882 1.00604 0.91866 1.20286 1.00092 0.93280 0.98262 1.21151 1.00192 0.94880 0.96426 1.20905 1.01643 0.96793 0.94536 1.20390 0.95340 0.94170 0.96241 1.21754 1.01798 0.93789 0.81027 1.89053 1.92961 1.26212 1.19975 1.21754 1.00331 0.80421 0.95953 1.21496 0.92431 0.98027 0.84014 0.91268 1.20877 0.87039 0.96938 0.91817 1.42239 1.02699 1.58752 1.29883 1.19117 0.91267 1.22757 1.00891 0.91774 1.24602 0.96507 1.01469 0.98941 1.69642 1.08305 1.43450 1.37411 0.86328 0.78933 0.78866 0.82502 1.21655 1.21985 1.21634 1.21970 0.95202 1.01151 0.97630 0.92821 0.92941 0.92689 0.91638 0.91249 0.87726 0.91754 0.83635 0.85432 0.84774 0.90269 0.88382 0.88566 0.90475 0.96573 0.94521 0.78654 0.93997 0.90867 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.09 -0.95 2.68 -90.58 -0.24 -1.19 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.13 -1.25 5.36 -26.62 -0.14 -1.39 16 5 C 0.08 0.93 4.87 -3.71 -0.02 0.91 16 6 N -0.61 -9.60 2.97 -166.33 -0.49 -10.10 16 7 C 0.51 9.66 6.99 -12.33 -0.09 9.57 16 8 O -0.43 -10.39 10.48 5.32 0.06 -10.33 16 9 C -0.10 -1.57 5.49 -104.94 -0.58 -2.15 16 10 C -0.10 -1.32 7.41 -39.16 -0.29 -1.61 16 11 C -0.10 -1.13 10.03 -39.71 -0.40 -1.53 16 12 C -0.13 -1.51 6.33 -104.25 -0.66 -2.17 16 13 C -0.14 -1.86 6.31 -104.42 -0.66 -2.52 16 14 C -0.04 -0.66 9.60 -39.26 -0.38 -1.04 16 15 C 0.09 1.06 7.63 36.21 0.28 1.34 16 16 O -0.36 -4.35 11.72 -35.23 -0.41 -4.77 16 17 C 0.09 0.92 7.63 36.22 0.28 1.19 16 18 C 0.14 2.39 2.91 -67.60 -0.20 2.19 16 19 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.16 3.46 4.88 -4.04 -0.02 3.44 16 21 N -0.69 -18.56 3.20 -59.90 -0.19 -18.76 16 22 C -0.21 -6.19 9.72 -15.06 -0.15 -6.34 16 23 H 0.06 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 25 N -0.94 -29.92 13.06 55.49 0.72 -29.19 16 26 Si 0.90 23.81 29.55 -169.99 -5.02 18.78 16 27 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 28 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 C -0.12 -1.55 4.63 -26.61 -0.12 -1.67 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.11 1.11 3.69 -52.01 -0.19 0.91 16 37 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 38 H 0.15 1.62 5.45 -52.49 -0.29 1.33 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.13 2.15 7.98 -52.49 -0.42 1.73 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.02 0.35 8.11 -51.93 -0.42 -0.07 16 46 H 0.04 0.86 6.34 -51.93 -0.33 0.53 16 47 H 0.38 10.86 7.15 -40.82 -0.29 10.57 16 48 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 386.38 15.07 5.82 5.82 Total: -1.00 -35.46 386.38 -10.48 -45.94 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.83 Total: 7.17 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -3.14 Total: -4.58 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.04 Total: -58.04 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.36 Total: -15.10 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.02 Total: 18.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.46 -10.48 -45.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264561141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.584 kcal (2) G-P(sol) polarization free energy of solvation -35.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds