Wall clock time and date at job start Wed Apr 1 2020 02:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46456 * 2 1 4 4 C 1.53039 * 109.46153 * 240.02531 * 2 1 3 5 5 C 1.53185 * 109.31291 * 178.61979 * 4 2 1 6 6 N 1.46928 * 108.78051 * 54.63220 * 5 4 2 7 7 C 1.34776 * 120.63109 * 126.40783 * 6 5 4 8 8 O 1.21547 * 119.99941 * 179.22937 * 7 6 5 9 9 C 1.47847 * 119.99954 * 359.23609 * 7 6 5 10 10 C 1.39600 * 120.13309 * 33.28897 * 9 7 6 11 11 C 1.38000 * 119.89326 * 179.77053 * 10 9 7 12 12 C 1.38132 * 120.10657 * 0.49801 * 11 10 9 13 13 C 1.38756 * 120.27496 * 359.75837 * 12 11 10 14 14 C 1.37704 * 120.18644 * 359.97438 * 13 12 11 15 15 C 1.51122 * 107.25508 * 179.97438 * 13 12 11 16 16 O 1.43928 * 105.95336 * 342.28296 * 15 13 12 17 17 C 1.43918 * 104.97214 * 28.51468 * 16 15 13 18 18 C 1.46918 * 118.73686 * 306.39644 * 6 5 4 19 19 H 1.09004 * 109.58614 * 293.67059 * 18 6 5 20 20 C 1.52998 * 109.58816 * 173.39305 * 18 6 5 21 21 N 1.46505 * 109.47119 * 71.64734 * 20 18 6 22 22 C 1.36933 * 120.00004 * 174.56312 * 21 20 18 23 23 H 1.08006 * 120.00283 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99991 * 180.02562 * 22 21 20 25 25 N 1.31611 * 120.00064 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 120.00047 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46948 * 59.99591 * 26 24 22 28 28 H 1.48492 * 109.46925 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46911 * 299.99700 * 26 24 22 30 30 C 1.53044 * 109.45610 * 119.95704 * 2 1 3 31 31 H 1.08999 * 109.47306 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46863 * 59.97342 * 1 2 3 33 33 H 1.09003 * 109.47119 * 299.97733 * 1 2 3 34 34 H 1.09003 * 109.49342 * 298.56929 * 4 2 1 35 35 H 1.08997 * 109.49515 * 58.63063 * 4 2 1 36 36 H 1.09006 * 109.58828 * 174.42095 * 5 4 2 37 37 H 1.09005 * 109.58663 * 294.69927 * 5 4 2 38 38 H 1.07996 * 120.05317 * 0.02562 * 10 9 7 39 39 H 1.07995 * 119.94552 * 180.25427 * 11 10 9 40 40 H 1.08002 * 120.09714 * 179.97438 * 14 13 12 41 41 H 1.09002 * 110.15254 * 101.40646 * 15 13 12 42 42 H 1.09002 * 110.14765 * 223.15772 * 15 13 12 43 43 H 1.09002 * 110.15500 * 212.34777 * 17 16 15 44 44 H 1.09004 * 110.15124 * 90.60153 * 17 16 15 45 45 H 1.09003 * 109.47312 * 191.64789 * 20 18 6 46 46 H 1.09003 * 109.46898 * 311.65005 * 20 18 6 47 47 H 0.97003 * 119.99853 * 354.56416 * 21 20 18 48 48 H 0.96997 * 120.00010 * 180.02562 * 25 24 22 49 49 H 1.08997 * 109.50156 * 301.33487 * 30 2 1 50 50 H 1.08995 * 109.49928 * 61.43540 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5713 -0.6888 -1.2640 6 7 4.0678 -1.2489 0.0003 7 6 4.9619 -2.2574 0.0005 8 8 5.3756 -2.7026 1.0531 9 6 5.4397 -2.8220 -1.2797 10 6 5.5772 -2.0005 -2.4000 11 6 6.0280 -2.5317 -3.5912 12 6 6.3333 -3.8760 -3.6789 13 6 6.1937 -4.6988 -2.5703 14 6 5.7500 -4.1800 -1.3745 15 6 6.6022 -6.0915 -2.9915 16 8 6.5611 -6.0977 -4.4302 17 6 6.8321 -4.7379 -4.8158 18 6 3.5713 -0.6885 1.2644 19 1 3.9164 0.3402 1.3686 20 6 4.0910 -1.5248 2.4355 21 7 5.5262 -1.2857 2.6073 22 6 6.1908 -1.8419 3.6675 23 1 5.6570 -2.4565 4.3773 24 6 7.5505 -1.6150 3.8306 25 7 8.2010 -0.8657 2.9660 26 14 8.4571 -2.3732 5.2773 27 1 8.3456 -3.8525 5.2110 28 1 9.8886 -1.9822 5.2242 29 1 7.8577 -1.8880 6.5463 30 6 2.0398 -0.7206 1.2503 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5143 -0.8898 33 1 -0.3633 0.5135 0.8902 34 1 1.6978 -1.7558 -1.2380 35 1 1.6568 -0.2214 -2.1397 36 1 3.9417 -1.2850 -2.0981 37 1 3.9143 0.3404 -1.3699 38 1 5.3350 -0.9501 -2.3335 39 1 6.1386 -1.8961 -4.4573 40 1 5.6415 -4.8218 -0.5126 41 1 7.6122 -6.3080 -2.6437 42 1 5.9016 -6.8250 -2.5925 43 1 6.2979 -4.4943 -5.7341 44 1 7.9036 -4.5934 -4.9545 45 1 3.5638 -1.2414 3.3465 46 1 3.9207 -2.5818 2.2309 47 1 6.0056 -0.7334 1.9701 48 1 9.1512 -0.7074 3.0798 49 1 1.6572 -0.2204 2.1399 50 1 1.6977 -1.7554 1.2386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264561141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:44 Heat of formation + Delta-G solvation = -0.161378 kcal Electronic energy + Delta-G solvation = -31471.704587 eV Core-core repulsion = 27465.588198 eV Total energy + Delta-G solvation = -4006.116388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.09847 -41.19464 -38.74026 -38.17334 -36.31116 -34.92958 -33.96160 -32.65082 -32.23041 -31.45715 -29.43422 -28.80426 -27.16473 -26.31731 -24.78323 -24.46825 -23.36020 -22.72008 -22.42546 -21.04804 -20.29903 -19.13312 -18.05189 -17.64058 -17.42659 -16.95723 -16.76407 -16.50888 -16.15341 -16.01643 -15.55661 -15.35888 -15.29402 -14.93711 -14.86956 -14.64927 -14.39851 -14.30803 -13.90601 -13.77701 -13.69513 -13.52527 -13.20289 -13.13875 -12.87080 -12.79503 -12.68711 -12.57271 -12.51203 -12.18268 -12.09988 -11.99618 -11.83293 -11.65317 -11.29814 -11.23254 -10.97810 -10.87524 -10.06580 -9.93052 -9.53955 -9.43563 -8.64835 -7.85411 -5.03891 -0.16981 0.22690 1.40974 1.45941 1.51255 1.93908 2.05893 2.59785 2.68699 2.90217 3.14346 3.47345 3.55372 3.61465 3.75038 3.83245 3.87315 3.92672 4.06778 4.20344 4.29226 4.31010 4.34691 4.40244 4.42503 4.46625 4.53872 4.55304 4.65829 4.71736 4.74902 4.78812 4.83467 4.91517 4.93343 4.94801 5.02325 5.10158 5.12298 5.15373 5.20425 5.22433 5.30500 5.33067 5.42767 5.49960 5.57168 5.61903 5.77064 5.84264 6.35597 6.60039 7.41211 7.49538 8.22174 8.45500 9.39388 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007123 B = 0.004708 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3930.098262 B = 5945.856017 C = 9133.471786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.121 4.121 5 C 0.074 3.926 6 N -0.603 5.603 7 C 0.510 3.490 8 O -0.503 6.503 9 C -0.127 4.127 10 C -0.097 4.097 11 C -0.090 4.090 12 C -0.121 4.121 13 C -0.151 4.151 14 C -0.064 4.064 15 C 0.093 3.907 16 O -0.375 6.375 17 C 0.090 3.910 18 C 0.149 3.851 19 H 0.064 0.936 20 C 0.164 3.836 21 N -0.701 5.701 22 C -0.213 4.213 23 H 0.060 0.940 24 C -0.083 4.083 25 N -0.974 5.974 26 Si 0.967 3.033 27 H -0.289 1.289 28 H -0.294 1.294 29 H -0.276 1.276 30 C -0.112 4.112 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.166 0.834 39 H 0.172 0.828 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.094 0.906 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.367 0.633 48 H 0.245 0.755 49 H 0.080 0.920 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.577 -0.228 -20.829 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.047 4.047 6 N -0.338 5.338 7 C 0.297 3.703 8 O -0.377 6.377 9 C -0.131 4.131 10 C -0.115 4.115 11 C -0.107 4.107 12 C -0.121 4.121 13 C -0.151 4.151 14 C -0.083 4.083 15 C 0.017 3.983 16 O -0.294 6.294 17 C 0.014 3.986 18 C 0.045 3.955 19 H 0.082 0.918 20 C 0.038 3.962 21 N -0.341 5.341 22 C -0.346 4.346 23 H 0.078 0.922 24 C -0.274 4.274 25 N -0.627 5.627 26 Si 0.797 3.203 27 H -0.216 1.216 28 H -0.220 1.220 29 H -0.202 1.202 30 C -0.151 4.151 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.183 0.817 39 H 0.190 0.810 40 H 0.128 0.872 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.112 0.888 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.199 0.801 48 H 0.053 0.947 49 H 0.098 0.902 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.403 -0.773 -20.216 24.268 hybrid contribution 1.161 -0.277 1.472 1.895 sum -12.241 -1.050 -18.744 22.412 Atomic orbital electron populations 1.21767 0.93593 1.01868 1.02495 1.21116 0.96673 0.99429 0.93455 0.90433 1.21973 0.93863 1.01121 0.98994 1.22823 0.95701 1.00132 0.86065 1.47852 1.43314 1.35121 1.07533 1.18849 0.80294 0.82033 0.89147 1.91247 1.55525 1.59337 1.31574 1.20055 1.03984 0.94710 0.94302 1.21913 0.97217 1.01100 0.91271 1.20721 0.97886 0.93392 0.98742 1.21607 0.98659 0.95349 0.96488 1.21093 1.01471 0.98360 0.94206 1.20306 0.97133 0.94243 0.96649 1.21798 1.02337 0.93020 0.81162 1.89044 1.93132 1.27466 1.19715 1.22016 1.01684 0.78905 0.95971 1.21359 0.94956 0.96307 0.82860 0.91826 1.20887 0.84661 0.96675 0.94009 1.42274 1.04448 1.58489 1.28935 1.19453 0.91883 1.21939 1.01326 0.92156 1.25360 0.97304 1.02806 1.01966 1.69810 1.08014 1.45427 1.39436 0.85292 0.77429 0.77795 0.79816 1.21578 1.22017 1.20235 1.21915 0.91847 1.01355 0.99948 0.93069 0.91067 0.92488 0.92494 0.87849 0.86491 0.89963 0.81675 0.81036 0.87220 0.89712 0.87545 0.85581 0.88839 0.96708 0.96661 0.80147 0.94663 0.90161 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 2 C -0.09 -1.58 2.68 -10.77 -0.03 -1.61 16 3 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.12 -2.00 5.36 30.67 0.16 -1.84 16 5 C 0.07 1.52 4.87 86.36 0.42 1.94 16 6 N -0.60 -19.33 2.97 -798.42 -2.37 -21.70 16 7 C 0.51 20.41 6.99 86.79 0.61 21.01 16 8 O -0.50 -26.23 10.48 -3.86 -0.04 -26.27 16 9 C -0.13 -4.20 5.49 -20.07 -0.11 -4.31 16 10 C -0.10 -2.31 7.41 22.54 0.17 -2.15 16 11 C -0.09 -1.68 10.03 22.19 0.22 -1.46 16 12 C -0.12 -2.57 6.33 -19.63 -0.12 -2.69 16 13 C -0.15 -4.01 6.31 -19.73 -0.12 -4.13 16 14 C -0.06 -2.11 9.60 22.48 0.22 -1.90 16 15 C 0.09 2.07 7.63 71.37 0.54 2.61 16 16 O -0.37 -8.14 11.72 -148.98 -1.75 -9.89 16 17 C 0.09 1.48 7.63 71.38 0.54 2.02 16 18 C 0.15 5.09 2.91 44.98 0.13 5.22 16 19 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 20 C 0.16 7.52 4.88 86.38 0.42 7.95 16 21 N -0.70 -39.80 3.20 -343.43 -1.10 -40.90 16 22 C -0.21 -13.31 9.72 84.03 0.82 -12.49 16 23 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 24 C -0.08 -5.27 5.50 84.86 0.47 -4.81 16 25 N -0.97 -64.68 13.06 21.65 0.28 -64.40 16 26 Si 0.97 50.77 29.55 68.60 2.03 52.80 16 27 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 28 H -0.29 -15.31 7.11 99.48 0.71 -14.61 16 29 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 30 C -0.11 -2.81 4.63 30.67 0.14 -2.67 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.12 2.16 3.69 -2.46 -0.01 2.15 16 37 H 0.08 1.47 8.13 -2.38 -0.02 1.45 16 38 H 0.17 3.20 5.45 -2.91 -0.02 3.18 16 39 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.11 3.99 7.98 -2.91 -0.02 3.96 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.02 0.68 8.11 -2.39 -0.02 0.66 16 46 H 0.02 0.79 6.34 -2.39 -0.02 0.77 16 47 H 0.37 22.24 7.15 -92.71 -0.66 21.58 16 48 H 0.24 15.77 8.31 -92.71 -0.77 15.00 16 49 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -83.33 386.38 2.48 -80.85 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.29 Total: 30.12 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.14 Total: -0.61 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -3.19 Total: -127.00 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -1.79 Total: -36.16 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.03 Total: 52.80 kcal Total: -83.33 2.48 -80.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264561141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.693 kcal (2) G-P(sol) polarization free energy of solvation -83.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds