Wall clock time and date at job start Wed Apr 1 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 O 1.42905 * 109.46996 * 119.99838 * 2 1 3 5 5 C 1.42901 * 113.99933 * 150.00531 * 4 2 1 6 6 C 1.52997 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47057 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47287 * 179.97438 * 7 6 5 9 9 C 1.46899 * 110.99815 * 179.97438 * 8 7 6 10 10 H 1.08994 * 110.64566 * 36.69201 * 9 8 7 11 11 C 1.54325 * 110.72303 * 273.54559 * 9 8 7 12 12 N 1.47023 * 107.27284 * 263.83247 * 11 9 8 13 13 C 1.34778 * 125.64979 * 181.01769 * 12 11 9 14 14 O 1.21278 * 119.99748 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00209 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99825 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99855 * 179.72221 * 17 16 15 20 20 N 1.31630 * 119.99849 * 180.27695 * 19 17 16 21 21 Si 1.86800 * 120.00065 * 0.28024 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99557 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00077 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99899 * 21 19 17 25 25 C 1.47422 * 108.70279 * 1.28568 * 12 11 9 26 26 C 1.55131 * 104.72363 * 335.55352 * 25 12 11 27 27 H 1.08999 * 111.18938 * 279.19368 * 26 25 12 28 28 C 1.52993 * 110.94119 * 155.28916 * 26 25 12 29 29 H 1.09000 * 109.47768 * 299.99911 * 1 2 3 30 30 H 1.09001 * 109.47482 * 60.00355 * 1 2 3 31 31 H 1.09004 * 109.47456 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47300 * 239.99562 * 2 1 3 33 33 H 1.08998 * 109.46789 * 299.99703 * 3 2 1 34 34 H 1.08995 * 109.47332 * 59.99582 * 3 2 1 35 35 H 1.08995 * 109.47233 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47454 * 59.99609 * 5 4 2 37 37 H 1.08999 * 109.46550 * 299.99392 * 5 4 2 38 38 H 1.08998 * 109.47475 * 59.99550 * 6 5 4 39 39 H 1.08998 * 109.47495 * 299.99205 * 6 5 4 40 40 H 1.09005 * 109.47393 * 59.99759 * 7 6 5 41 41 H 1.08999 * 109.47302 * 299.99734 * 7 6 5 42 42 H 1.00901 * 110.99822 * 56.04598 * 8 7 6 43 43 H 1.08998 * 109.88499 * 144.41182 * 11 9 8 44 44 H 1.09002 * 110.00828 * 23.31916 * 11 9 8 45 45 H 1.08999 * 109.47278 * 59.99800 * 15 13 12 46 46 H 1.09002 * 109.46837 * 300.00183 * 15 13 12 47 47 H 0.97005 * 119.99878 * 180.02562 * 20 19 17 48 48 H 1.09003 * 110.36588 * 94.47991 * 25 12 11 49 49 H 1.09004 * 110.36868 * 216.80396 * 25 12 11 50 50 H 1.09002 * 109.47477 * 307.95505 * 28 26 25 51 51 H 1.09008 * 109.47319 * 67.95769 * 28 26 25 52 52 H 1.08999 * 109.47468 * 187.95627 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 6 3.6753 -2.0090 2.2943 7 6 5.0238 -2.7063 2.1035 8 7 5.4172 -3.3631 3.3572 9 6 6.7100 -4.0452 3.2110 10 1 7.3776 -3.4699 2.5696 11 6 6.5150 -5.4720 2.6563 12 7 6.4973 -6.3886 3.8057 13 6 6.3663 -7.7284 3.7400 14 8 6.2503 -8.2742 2.6633 15 6 6.3641 -8.5482 5.0045 16 16 6.1740 -10.2993 4.5880 17 6 6.2043 -11.0030 6.2031 18 1 6.3158 -10.3656 7.0679 19 6 6.0786 -12.3758 6.3644 20 7 6.0958 -12.9010 7.5713 21 14 5.8851 -13.4782 4.8688 22 1 7.2250 -13.9069 4.3932 23 1 5.0840 -14.6736 5.2353 24 1 5.1925 -12.7302 3.7889 25 6 6.6400 -5.5989 5.0423 26 6 7.3576 -4.2972 4.5983 27 1 8.4326 -4.4520 4.5053 28 6 7.0533 -3.1489 5.5623 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1299 1.4425 -0.0005 36 1 4.0199 -0.5873 0.7126 37 1 3.1808 -2.0706 0.1988 38 1 2.9213 -2.7462 2.5701 39 1 3.7604 -1.2632 3.0846 40 1 5.7781 -1.9694 1.8276 41 1 4.9385 -3.4523 1.3134 42 1 4.7034 -4.0047 3.6687 43 1 7.3401 -5.7272 1.9913 44 1 5.5704 -5.5364 2.1163 45 1 5.5364 -8.2335 5.6401 46 1 7.3052 -8.4012 5.5344 47 1 6.0084 -13.8605 7.6840 48 1 5.6601 -5.3704 5.4617 49 1 7.2481 -6.1380 5.7688 50 1 5.9747 -3.0589 5.6914 51 1 7.5190 -3.3511 6.5270 52 1 7.4494 -2.2183 5.1557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274173165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:51 Heat of formation + Delta-G solvation = -95.695125 kcal Electronic energy + Delta-G solvation = -27485.813185 eV Core-core repulsion = 23610.998094 eV Total energy + Delta-G solvation = -3874.815091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.27157 -38.91264 -38.07680 -35.79693 -33.61218 -32.66411 -32.43791 -31.28517 -29.94114 -27.80927 -27.60616 -26.38580 -25.61441 -24.75256 -22.79928 -22.03409 -21.53119 -20.03567 -19.46019 -17.70848 -17.38866 -16.88912 -16.54301 -16.31279 -15.62795 -15.49166 -15.20426 -15.00099 -14.68749 -14.63602 -14.19704 -13.86874 -13.61658 -13.49968 -13.37049 -13.22853 -12.84890 -12.82022 -12.79099 -12.65085 -12.37655 -12.18885 -12.09452 -11.98059 -11.85920 -11.63369 -11.59717 -11.27124 -11.23453 -11.08743 -11.01760 -11.01276 -10.82017 -10.59237 -9.97066 -9.86273 -9.54694 -9.00712 -8.83522 -8.57887 -8.50120 -6.92684 -6.29083 -4.01003 2.67978 2.92604 3.09446 3.19606 3.32884 3.50292 3.59502 3.81495 4.23008 4.26996 4.33320 4.41085 4.50051 4.59849 4.68467 4.71376 4.74401 4.77983 4.83761 4.96596 5.04721 5.07764 5.09595 5.10154 5.13300 5.20477 5.26161 5.29343 5.32959 5.37163 5.39735 5.41844 5.49153 5.58899 5.68775 5.69624 5.72020 5.76242 5.77555 5.83339 5.87795 5.93262 6.01087 6.23362 6.30758 6.62479 6.85021 6.96693 7.55383 7.93945 8.41263 8.41907 9.17060 10.80085 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.001799 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.115597 B =15556.866096 C =16625.382679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 C -0.175 4.175 4 O -0.383 6.383 5 C 0.064 3.936 6 C -0.116 4.116 7 C 0.061 3.939 8 N -0.673 5.673 9 C 0.080 3.920 10 H 0.098 0.902 11 C 0.081 3.919 12 N -0.623 5.623 13 C 0.546 3.454 14 O -0.520 6.520 15 C -0.117 4.117 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.236 1.236 25 C 0.100 3.900 26 C -0.094 4.094 27 H 0.087 0.913 28 C -0.125 4.125 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.347 0.653 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.271 0.729 48 H 0.072 0.928 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.049 0.951 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.575 30.473 -12.210 33.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.233 4.233 4 O -0.302 6.302 5 C -0.013 4.013 6 C -0.154 4.154 7 C -0.069 4.069 8 N -0.303 5.303 9 C -0.031 4.031 10 H 0.116 0.884 11 C -0.044 4.044 12 N -0.361 5.361 13 C 0.335 3.665 14 O -0.394 6.394 15 C -0.267 4.267 16 S 0.083 5.917 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.160 1.160 25 C -0.023 4.023 26 C -0.114 4.114 27 H 0.105 0.895 28 C -0.182 4.182 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.166 0.834 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.068 0.932 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.607 29.970 -13.256 32.969 hybrid contribution 0.008 -0.839 0.036 0.840 sum -3.599 29.131 -13.221 32.193 Atomic orbital electron populations 1.21869 0.93561 1.02831 1.02538 1.22079 0.95085 0.92424 0.88140 1.22300 1.01507 0.96828 1.02632 1.87929 1.36649 1.70017 1.35617 1.22449 0.85598 0.95339 0.97887 1.21443 0.96343 1.00437 0.97217 1.21865 0.96483 0.97595 0.90921 1.60505 1.04498 1.35428 1.29903 1.22653 0.91981 0.91386 0.97080 0.88433 1.22633 1.02064 0.89850 0.89872 1.48442 1.74628 1.05328 1.07671 1.20022 0.75370 0.80029 0.91121 1.90702 1.48240 1.70028 1.30442 1.23251 1.05663 1.00221 0.97604 1.84788 1.96169 0.96465 1.14256 1.22307 1.58023 0.95802 0.90722 0.89367 1.24704 0.93241 0.97127 0.96170 1.69940 1.47839 1.12704 1.21146 0.86740 0.79882 0.81310 0.83953 1.19210 1.19911 1.15952 1.22524 1.00705 0.91568 0.87466 1.22447 0.99555 0.94805 0.94592 0.89464 1.21466 1.02855 0.96580 0.97330 0.91725 0.91275 0.91928 0.92326 0.91687 0.91701 0.92523 0.93353 0.93455 0.91117 0.90103 0.90697 0.94847 0.83423 0.91251 0.91848 0.88531 0.88568 0.91939 0.90993 0.90179 0.91201 0.93157 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.56 37.15 0.36 -0.51 16 2 C 0.08 0.53 3.34 -26.73 -0.09 0.44 16 3 C -0.18 -0.95 9.53 37.16 0.35 -0.60 16 4 O -0.38 -3.33 9.99 -35.23 -0.35 -3.68 16 5 C 0.06 0.45 5.75 37.16 0.21 0.66 16 6 C -0.12 -0.81 5.84 -26.73 -0.16 -0.97 16 7 C 0.06 0.39 5.51 -3.82 -0.02 0.37 16 8 N -0.67 -4.95 4.90 -104.79 -0.51 -5.47 16 9 C 0.08 0.63 3.02 -65.87 -0.20 0.43 16 10 H 0.10 0.67 7.89 -51.93 -0.41 0.26 16 11 C 0.08 0.91 6.31 -3.06 -0.02 0.89 16 12 N -0.62 -8.55 3.32 -170.38 -0.57 -9.12 16 13 C 0.55 10.19 7.87 -10.99 -0.09 10.10 16 14 O -0.52 -11.67 16.19 5.56 0.09 -11.58 16 15 C -0.12 -2.33 5.16 36.00 0.19 -2.15 16 16 S -0.14 -3.69 18.54 -107.50 -1.99 -5.68 16 17 C -0.52 -15.12 10.04 30.94 0.31 -14.80 16 18 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 19 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 20 N -0.88 -26.61 13.97 55.49 0.78 -25.84 16 21 Si 0.86 21.93 27.74 -169.99 -4.72 17.21 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.24 -6.04 6.73 56.52 0.38 -5.66 16 25 C 0.10 1.05 6.06 -2.41 -0.01 1.03 16 26 C -0.09 -0.76 3.57 -88.35 -0.32 -1.08 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 28 C -0.12 -0.89 8.86 37.15 0.33 -0.56 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.34 7.79 -51.93 -0.40 -0.07 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 36 H 0.05 0.29 7.87 -51.93 -0.41 -0.12 16 37 H 0.05 0.31 8.08 -51.93 -0.42 -0.11 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 41 H 0.03 0.23 7.83 -51.93 -0.41 -0.17 16 42 H 0.35 2.86 8.41 -39.29 -0.33 2.53 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.75 7.70 -51.93 -0.40 0.35 16 45 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 46 H 0.10 1.80 7.85 -51.91 -0.41 1.39 16 47 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.07 0.71 7.99 -51.93 -0.41 0.29 16 49 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 50 H 0.07 0.53 7.36 -51.93 -0.38 0.15 16 51 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 52 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 427.79 15.07 6.45 6.45 Total: -1.00 -33.86 427.79 -9.93 -43.79 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -9.85 Total: -2.09 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 0.75 Total: -4.00 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -0.30 Total: -40.43 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.26 Total: -15.25 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -33.86 -9.93 -43.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274173165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.903 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds