Wall clock time and date at job start Wed Apr 1 2020 03:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 O 1.42905 * 109.46996 * 119.99838 * 2 1 3 5 5 C 1.42901 * 113.99933 * 150.00531 * 4 2 1 6 6 C 1.52997 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47057 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47287 * 179.97438 * 7 6 5 9 9 C 1.46899 * 110.99815 * 179.97438 * 8 7 6 10 10 H 1.08994 * 110.64566 * 36.69201 * 9 8 7 11 11 C 1.54325 * 110.72303 * 273.54559 * 9 8 7 12 12 N 1.47023 * 107.27284 * 263.83247 * 11 9 8 13 13 C 1.34778 * 125.64979 * 181.01769 * 12 11 9 14 14 O 1.21278 * 119.99748 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00209 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99825 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99855 * 179.72221 * 17 16 15 20 20 N 1.31630 * 119.99849 * 180.27695 * 19 17 16 21 21 Si 1.86800 * 120.00065 * 0.28024 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99557 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00077 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99899 * 21 19 17 25 25 C 1.47422 * 108.70279 * 1.28568 * 12 11 9 26 26 C 1.55131 * 104.72363 * 335.55352 * 25 12 11 27 27 H 1.08999 * 111.18938 * 279.19368 * 26 25 12 28 28 C 1.52993 * 110.94119 * 155.28916 * 26 25 12 29 29 H 1.09000 * 109.47768 * 299.99911 * 1 2 3 30 30 H 1.09001 * 109.47482 * 60.00355 * 1 2 3 31 31 H 1.09004 * 109.47456 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47300 * 239.99562 * 2 1 3 33 33 H 1.08998 * 109.46789 * 299.99703 * 3 2 1 34 34 H 1.08995 * 109.47332 * 59.99582 * 3 2 1 35 35 H 1.08995 * 109.47233 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47454 * 59.99609 * 5 4 2 37 37 H 1.08999 * 109.46550 * 299.99392 * 5 4 2 38 38 H 1.08998 * 109.47475 * 59.99550 * 6 5 4 39 39 H 1.08998 * 109.47495 * 299.99205 * 6 5 4 40 40 H 1.09005 * 109.47393 * 59.99759 * 7 6 5 41 41 H 1.08999 * 109.47302 * 299.99734 * 7 6 5 42 42 H 1.00901 * 110.99822 * 56.04598 * 8 7 6 43 43 H 1.08998 * 109.88499 * 144.41182 * 11 9 8 44 44 H 1.09002 * 110.00828 * 23.31916 * 11 9 8 45 45 H 1.08999 * 109.47278 * 59.99800 * 15 13 12 46 46 H 1.09002 * 109.46837 * 300.00183 * 15 13 12 47 47 H 0.97005 * 119.99878 * 180.02562 * 20 19 17 48 48 H 1.09003 * 110.36588 * 94.47991 * 25 12 11 49 49 H 1.09004 * 110.36868 * 216.80396 * 25 12 11 50 50 H 1.09002 * 109.47477 * 307.95505 * 28 26 25 51 51 H 1.09008 * 109.47319 * 67.95769 * 28 26 25 52 52 H 1.08999 * 109.47468 * 187.95627 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 6 3.6753 -2.0090 2.2943 7 6 5.0238 -2.7063 2.1035 8 7 5.4172 -3.3631 3.3572 9 6 6.7100 -4.0452 3.2110 10 1 7.3776 -3.4699 2.5696 11 6 6.5150 -5.4720 2.6563 12 7 6.4973 -6.3886 3.8057 13 6 6.3663 -7.7284 3.7400 14 8 6.2503 -8.2742 2.6633 15 6 6.3641 -8.5482 5.0045 16 16 6.1740 -10.2993 4.5880 17 6 6.2043 -11.0030 6.2031 18 1 6.3158 -10.3656 7.0679 19 6 6.0786 -12.3758 6.3644 20 7 6.0958 -12.9010 7.5713 21 14 5.8851 -13.4782 4.8688 22 1 7.2250 -13.9069 4.3932 23 1 5.0840 -14.6736 5.2353 24 1 5.1925 -12.7302 3.7889 25 6 6.6400 -5.5989 5.0423 26 6 7.3576 -4.2972 4.5983 27 1 8.4326 -4.4520 4.5053 28 6 7.0533 -3.1489 5.5623 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1299 1.4425 -0.0005 36 1 4.0199 -0.5873 0.7126 37 1 3.1808 -2.0706 0.1988 38 1 2.9213 -2.7462 2.5701 39 1 3.7604 -1.2632 3.0846 40 1 5.7781 -1.9694 1.8276 41 1 4.9385 -3.4523 1.3134 42 1 4.7034 -4.0047 3.6687 43 1 7.3401 -5.7272 1.9913 44 1 5.5704 -5.5364 2.1163 45 1 5.5364 -8.2335 5.6401 46 1 7.3052 -8.4012 5.5344 47 1 6.0084 -13.8605 7.6840 48 1 5.6601 -5.3704 5.4617 49 1 7.2481 -6.1380 5.7688 50 1 5.9747 -3.0589 5.6914 51 1 7.5190 -3.3511 6.5270 52 1 7.4494 -2.2183 5.1557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274173165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:49 Heat of formation + Delta-G solvation = -117.616592 kcal Electronic energy + Delta-G solvation = -27486.763771 eV Core-core repulsion = 23610.998094 eV Total energy + Delta-G solvation = -3875.765677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.33978 -39.53380 -39.18810 -36.54461 -34.69487 -34.33661 -33.42230 -32.03511 -31.17676 -28.73940 -28.11364 -27.85197 -27.21750 -25.39454 -23.67729 -22.56352 -22.03374 -20.86415 -20.72849 -19.63368 -18.25448 -17.83825 -17.40506 -17.22197 -17.09795 -16.67009 -16.27534 -15.98572 -15.83034 -15.52852 -15.30187 -14.97758 -14.90217 -14.58965 -14.35309 -14.03289 -13.74440 -13.69869 -13.56972 -13.39825 -13.34884 -13.12430 -13.06845 -13.02725 -12.85542 -12.69146 -12.60444 -12.48054 -12.22575 -12.15652 -11.89416 -11.80449 -11.68755 -11.57468 -11.45154 -11.19127 -11.05823 -10.57166 -10.50175 -9.81813 -9.40773 -9.03791 -8.53342 -6.25143 0.93321 1.29555 1.43063 1.45857 1.51167 2.01665 2.23277 2.57370 2.65308 2.84759 3.19163 3.42504 3.48318 3.78852 3.94792 3.96442 4.01610 4.12567 4.14465 4.20360 4.23839 4.26603 4.31467 4.36650 4.37681 4.49476 4.54773 4.58882 4.67303 4.73589 4.74812 4.76776 4.79745 4.86543 4.91931 4.93461 4.97583 5.17024 5.22583 5.24179 5.26556 5.29367 5.32259 5.34035 5.67130 5.68885 6.01446 6.09255 6.27538 6.31175 6.35546 6.91522 7.00220 8.58994 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.001799 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.115597 B =15556.866096 C =16625.382679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 C -0.172 4.172 4 O -0.407 6.407 5 C 0.063 3.937 6 C -0.109 4.109 7 C 0.065 3.935 8 N -0.669 5.669 9 C 0.094 3.906 10 H 0.119 0.881 11 C 0.077 3.923 12 N -0.612 5.612 13 C 0.546 3.454 14 O -0.566 6.566 15 C -0.102 4.102 16 S -0.175 6.175 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.048 3.952 20 N -0.915 5.915 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.257 1.257 24 H -0.239 1.239 25 C 0.091 3.909 26 C -0.084 4.084 27 H 0.094 0.906 28 C -0.118 4.118 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.030 0.970 42 H 0.342 0.658 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.277 0.723 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.064 0.936 51 H 0.053 0.947 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 32.577 -13.294 35.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 C -0.229 4.229 4 O -0.327 6.327 5 C -0.014 4.014 6 C -0.147 4.147 7 C -0.064 4.064 8 N -0.299 5.299 9 C -0.017 4.017 10 H 0.137 0.863 11 C -0.047 4.047 12 N -0.346 5.346 13 C 0.334 3.666 14 O -0.445 6.445 15 C -0.253 4.253 16 S 0.051 5.949 17 C -0.677 4.677 18 H 0.081 0.919 19 C -0.158 4.158 20 N -0.552 5.552 21 Si 0.735 3.265 22 H -0.186 1.186 23 H -0.181 1.181 24 H -0.163 1.163 25 C -0.031 4.031 26 C -0.104 4.104 27 H 0.113 0.887 28 C -0.175 4.175 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.049 0.951 42 H 0.160 0.840 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.083 0.917 51 H 0.072 0.928 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.138 32.136 -14.314 35.319 hybrid contribution -0.141 -1.301 0.423 1.375 sum -3.279 30.835 -13.890 33.978 Atomic orbital electron populations 1.21890 0.93259 1.02496 1.03111 1.22268 0.95465 0.92987 0.87783 1.22271 1.01539 0.96112 1.02991 1.87899 1.37427 1.70449 1.36912 1.22502 0.85433 0.95642 0.97775 1.21353 0.96261 0.99890 0.97180 1.21863 0.96536 0.97645 0.90352 1.60551 1.04193 1.34891 1.30269 1.22640 0.92605 0.89371 0.97104 0.86294 1.22880 1.01585 0.91164 0.89076 1.48380 1.72057 1.04105 1.10104 1.19685 0.75682 0.81571 0.89673 1.90680 1.50973 1.71366 1.31463 1.23198 1.06907 0.96239 0.98914 1.84705 1.96394 1.01296 1.12466 1.22432 1.57714 0.96032 0.91555 0.91938 1.25539 0.92934 0.98498 0.98809 1.70013 1.48752 1.13514 1.22966 0.85882 0.80212 0.79862 0.80502 1.18624 1.18140 1.16259 1.22839 1.01771 0.92314 0.86169 1.22432 0.99629 0.93667 0.94676 0.88733 1.21410 1.02620 0.96288 0.97219 0.92374 0.89485 0.92702 0.91592 0.90204 0.92453 0.92424 0.92155 0.93246 0.92437 0.90670 0.89287 0.95131 0.83972 0.91660 0.92551 0.87275 0.87181 0.91305 0.90002 0.90125 0.91653 0.92776 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.56 71.98 0.69 -0.92 16 2 C 0.07 0.87 3.34 30.59 0.10 0.97 16 3 C -0.17 -1.63 9.53 71.98 0.69 -0.94 16 4 O -0.41 -6.80 9.99 -148.98 -1.49 -8.29 16 5 C 0.06 0.80 5.75 71.98 0.41 1.21 16 6 C -0.11 -1.38 5.84 30.59 0.18 -1.20 16 7 C 0.07 0.71 5.51 86.30 0.48 1.18 16 8 N -0.67 -8.32 4.90 -485.44 -2.38 -10.70 16 9 C 0.09 1.23 3.02 46.11 0.14 1.37 16 10 H 0.12 1.17 7.89 -2.39 -0.02 1.15 16 11 C 0.08 1.61 6.31 86.73 0.55 2.16 16 12 N -0.61 -15.99 3.32 -811.35 -2.70 -18.68 16 13 C 0.55 20.10 7.87 87.66 0.69 20.79 16 14 O -0.57 -25.52 16.19 -3.02 -0.05 -25.57 16 15 C -0.10 -4.03 5.16 71.23 0.37 -3.66 16 16 S -0.18 -9.07 18.54 -56.49 -1.05 -10.11 16 17 C -0.53 -31.21 10.04 67.96 0.68 -30.53 16 18 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 19 C 0.05 2.83 5.50 84.86 0.47 3.30 16 20 N -0.91 -55.87 13.97 21.65 0.30 -55.56 16 21 Si 0.91 45.37 27.74 68.60 1.90 47.27 16 22 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.24 -11.90 6.73 99.48 0.67 -11.23 16 25 C 0.09 1.71 6.06 86.93 0.53 2.23 16 26 C -0.08 -1.12 3.57 -9.32 -0.03 -1.15 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 C -0.12 -1.32 8.86 71.98 0.64 -0.68 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 0.68 7.79 -2.39 -0.02 0.66 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.53 7.87 -2.39 -0.02 0.51 16 36 H 0.06 0.61 7.87 -2.39 -0.02 0.59 16 37 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 0.76 8.09 -2.38 -0.02 0.74 16 41 H 0.03 0.37 7.83 -2.39 -0.02 0.35 16 42 H 0.34 5.03 8.41 -89.69 -0.75 4.28 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 1.28 7.70 -2.39 -0.02 1.26 16 45 H 0.11 4.02 8.14 -2.39 -0.02 4.01 16 46 H 0.11 4.03 7.85 -2.39 -0.02 4.01 16 47 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 48 H 0.08 1.43 7.99 -2.39 -0.02 1.41 16 49 H 0.08 1.55 7.48 -2.38 -0.02 1.53 16 50 H 0.06 0.82 7.36 -2.39 -0.02 0.80 16 51 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 52 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -73.84 427.79 1.19 -72.65 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.08 Total: 14.88 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 6.57 Total: -5.89 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -4.77 Total: -84.94 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -1.54 Total: -33.86 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.27 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.05 Total: -10.11 kcal Total: -73.84 1.19 -72.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274173165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.968 kcal (2) G-P(sol) polarization free energy of solvation -73.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds