Wall clock time and date at job start Wed Apr 1 2020 03:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.28824 * 2 1 4 4 C 1.54000 * 110.32668 * 122.13668 * 2 1 3 5 5 N 1.47481 * 107.08597 * 117.58584 * 4 2 1 6 6 C 1.34779 * 127.03455 * 205.41165 * 5 4 2 7 7 O 1.21561 * 120.00160 * 173.40257 * 6 5 4 8 8 C 1.47847 * 119.99995 * 353.39969 * 6 5 4 9 9 C 1.39596 * 120.22218 * 348.97288 * 8 6 5 10 10 C 1.37751 * 119.73912 * 179.86807 * 9 8 6 11 11 C 1.38800 * 120.50796 * 0.51347 * 10 9 8 12 12 C 1.38081 * 120.00764 * 359.52155 * 11 10 9 13 13 C 1.38334 * 120.01509 * 0.33796 * 12 11 10 14 14 C 1.50764 * 121.33401 * 180.65357 * 12 11 10 15 15 C 1.52957 * 109.78837 * 342.78924 * 14 12 11 16 16 O 1.43200 * 108.48818 * 49.21892 * 15 14 12 17 17 C 1.42707 * 113.13336 * 289.30343 * 16 15 14 18 18 C 1.48116 * 105.93531 * 25.44574 * 5 4 2 19 19 C 1.54618 * 110.32578 * 237.75281 * 2 1 3 20 20 H 1.09003 * 110.73996 * 337.59942 * 19 2 1 21 21 C 1.53011 * 110.73731 * 100.91989 * 19 2 1 22 22 N 1.46498 * 109.47099 * 184.99854 * 21 19 2 23 23 C 1.36933 * 119.99978 * 179.97438 * 22 21 19 24 24 H 1.08003 * 119.99613 * 0.02562 * 23 22 21 25 25 C 1.38808 * 120.00330 * 180.02562 * 23 22 21 26 26 N 1.31623 * 119.99730 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00223 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47510 * 60.00062 * 27 25 23 29 29 H 1.48502 * 109.47136 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47033 * 299.99574 * 27 25 23 31 31 H 1.08995 * 109.46775 * 299.31419 * 1 2 3 32 32 H 1.08991 * 109.46992 * 59.32220 * 1 2 3 33 33 H 1.09006 * 109.46884 * 179.32042 * 1 2 3 34 34 H 1.08999 * 109.91246 * 236.94793 * 4 2 1 35 35 H 1.09005 * 109.91574 * 358.03082 * 4 2 1 36 36 H 1.08000 * 120.12892 * 0.12924 * 9 8 6 37 37 H 1.08008 * 119.74327 * 180.24278 * 10 9 8 38 38 H 1.07999 * 119.91268 * 179.73596 * 13 12 11 39 39 H 1.09004 * 109.41974 * 102.89116 * 14 12 11 40 40 H 1.09005 * 109.41803 * 222.69507 * 14 12 11 41 41 H 1.09000 * 109.63154 * 289.51676 * 15 14 12 42 42 H 1.09003 * 109.79529 * 169.01867 * 15 14 12 43 43 H 1.09003 * 109.33796 * 291.70977 * 17 16 15 44 44 H 1.09002 * 109.20736 * 172.11266 * 17 16 15 45 45 H 1.09001 * 110.66143 * 79.14936 * 18 5 4 46 46 H 1.08998 * 110.66530 * 202.26978 * 18 5 4 47 47 H 1.08996 * 109.47296 * 305.00405 * 21 19 2 48 48 H 1.09001 * 109.46483 * 64.99836 * 21 19 2 49 49 H 0.96998 * 120.00272 * 0.02562 * 22 21 19 50 50 H 0.96998 * 119.99785 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8277 -1.9217 0.7102 6 6 3.0625 -3.0868 1.3459 7 8 3.6069 -4.0009 0.7580 8 6 2.6578 -3.2530 2.7581 9 6 2.2461 -2.1484 3.5058 10 6 1.8687 -2.3151 4.8201 11 6 1.9046 -3.5712 5.4096 12 6 2.3116 -4.6673 4.6752 13 6 2.6904 -4.5130 3.3537 14 6 2.3481 -6.0473 5.2811 15 6 2.3083 -5.9442 6.8067 16 8 1.2380 -5.0670 7.1748 17 6 1.4977 -3.7007 6.8550 18 6 3.2836 -1.5377 -0.6457 19 6 2.0671 -0.7736 -1.2263 20 1 1.3174 -1.4700 -1.6020 21 6 2.5095 0.1939 -2.3260 22 7 2.9003 -0.5655 -3.5163 23 6 3.3343 0.0923 -4.6361 24 1 3.3888 1.1709 -4.6417 25 6 3.7041 -0.6272 -5.7642 26 7 3.6372 -1.9417 -5.7575 27 14 4.2968 0.2701 -7.2915 28 1 5.5067 1.0651 -6.9606 29 1 4.6275 -0.7183 -8.3493 30 1 3.2268 1.1769 -7.7794 31 1 -0.3633 0.5031 0.8960 32 1 -0.3633 0.5243 -0.8838 33 1 -0.3633 -1.0277 -0.0122 34 1 2.7181 -0.1227 1.8101 35 1 1.2335 -1.1128 1.8377 36 1 2.2197 -1.1676 3.0544 37 1 1.5464 -1.4611 5.3974 38 1 3.0125 -5.3708 2.7821 39 1 1.4872 -6.6186 4.9339 40 1 3.2643 -6.5530 4.9759 41 1 3.2535 -5.5420 7.1714 42 1 2.1389 -6.9304 7.2390 43 1 2.3005 -3.3275 7.4908 44 1 0.5960 -3.1138 7.0302 45 1 4.1554 -0.8859 -0.5880 46 1 3.5026 -2.4227 -1.2429 47 1 1.6851 0.8618 -2.5756 48 1 3.3584 0.7802 -1.9741 49 1 2.8510 -1.5342 -3.5114 50 1 3.8959 -2.4445 -6.5456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325543392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:41 Heat of formation + Delta-G solvation = -31.015434 kcal Electronic energy + Delta-G solvation = -29832.062474 eV Core-core repulsion = 25824.608153 eV Total energy + Delta-G solvation = -4007.454321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.96051 -39.94649 -38.16377 -37.36919 -34.75988 -33.56592 -32.90919 -32.11772 -31.38829 -29.92878 -29.10425 -26.95405 -26.43201 -25.11716 -24.32010 -23.31978 -22.56266 -21.67024 -20.72078 -19.96934 -19.55704 -17.45454 -17.19400 -16.94902 -16.57008 -16.07581 -15.94537 -15.58868 -15.11557 -14.80285 -14.50654 -14.44127 -14.17792 -14.00884 -13.73282 -13.53839 -13.43779 -13.24994 -13.01638 -12.90961 -12.78909 -12.59413 -12.37183 -11.96715 -11.89349 -11.78527 -11.46832 -11.29117 -11.16102 -10.97831 -10.83046 -10.52552 -10.47162 -10.38036 -10.22688 -10.01864 -9.82198 -9.65568 -9.15016 -8.97158 -8.86871 -8.61255 -6.91863 -5.74289 -3.03979 0.55401 1.01295 2.68199 2.92622 3.39803 3.45187 3.49276 3.50861 3.57135 4.17102 4.21744 4.32906 4.41902 4.50499 4.56791 4.66238 4.72620 4.79341 4.82790 4.86821 4.91481 5.05209 5.11462 5.21037 5.24194 5.30965 5.35555 5.44017 5.48970 5.51555 5.58512 5.58915 5.65464 5.74554 5.77394 5.92310 5.95254 6.01620 6.06632 6.09529 6.15473 6.17350 6.20309 6.39811 6.46115 6.55372 6.62590 6.70727 6.83424 7.55788 7.70160 8.15749 8.43789 9.54820 10.12049 10.46264 11.48209 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023651 B = 0.002067 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.600222 B =13543.856823 C =14416.748400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.089 0.911 4 C 0.094 3.906 5 N -0.615 5.615 6 C 0.572 3.428 7 O -0.534 6.534 8 C -0.121 4.121 9 C -0.111 4.111 10 C -0.120 4.120 11 C -0.102 4.102 12 C -0.083 4.083 13 C -0.058 4.058 14 C -0.116 4.116 15 C 0.058 3.942 16 O -0.375 6.375 17 C 0.100 3.900 18 C 0.114 3.886 19 C -0.102 4.102 20 H 0.084 0.916 21 C 0.165 3.835 22 N -0.733 5.733 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.908 3.092 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.152 0.848 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.023 0.977 48 H 0.021 0.979 49 H 0.384 0.616 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 -1.507 29.410 30.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.029 4.029 5 N -0.348 5.348 6 C 0.362 3.638 7 O -0.411 6.411 8 C -0.124 4.124 9 C -0.129 4.129 10 C -0.138 4.138 11 C -0.102 4.102 12 C -0.084 4.084 13 C -0.077 4.077 14 C -0.153 4.153 15 C -0.018 4.018 16 O -0.293 6.293 17 C 0.023 3.977 18 C -0.007 4.007 19 C -0.121 4.121 20 H 0.103 0.897 21 C 0.037 3.963 22 N -0.377 5.377 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.739 3.261 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.170 0.830 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.086 0.914 44 H 0.126 0.874 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.041 0.959 48 H 0.039 0.961 49 H 0.218 0.782 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.726 -2.038 29.103 29.731 hybrid contribution 0.596 0.358 -1.160 1.352 sum -5.130 -1.680 27.943 28.460 Atomic orbital electron populations 1.21840 0.94069 1.02047 1.01971 1.22145 0.96457 0.99765 0.93790 0.89279 1.22653 0.95540 0.87595 0.97080 1.48688 1.53178 1.14414 1.18490 1.17886 0.79183 0.80993 0.85758 1.90809 1.43662 1.39189 1.67471 1.19903 1.03873 0.94705 0.93936 1.22233 0.96520 0.99879 0.94286 1.20937 1.01287 0.96495 0.95090 1.20467 0.99089 0.93647 0.97019 1.19424 1.00111 0.95060 0.93766 1.21204 0.95837 0.96939 0.93683 1.21140 1.03960 0.93874 0.96296 1.22651 0.90540 0.94972 0.93653 1.88080 1.42192 1.16851 1.82222 1.21499 1.01851 0.83987 0.90364 1.22633 0.96837 1.00249 0.81003 1.22582 0.97028 0.97857 0.94655 0.89718 1.20624 0.96556 0.92713 0.86382 1.42367 1.79220 1.05973 1.10150 1.19153 1.36144 0.91220 0.90811 0.91238 1.24761 1.02357 0.95499 0.98330 1.69656 1.54205 1.04526 1.29580 0.86264 0.78590 0.78331 0.82951 1.21273 1.21704 1.21301 0.92720 0.91733 0.92606 0.91120 0.89834 0.83047 0.85225 0.84528 0.89364 0.89308 0.92506 0.88065 0.91396 0.87446 0.90511 0.89085 0.95894 0.96102 0.78187 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.89 37.16 0.33 -1.10 16 2 C -0.10 -1.16 3.17 -89.24 -0.28 -1.44 16 3 H 0.09 0.92 7.85 -51.93 -0.41 0.52 16 4 C 0.09 0.98 4.63 -2.98 -0.01 0.97 16 5 N -0.61 -8.84 3.29 -170.87 -0.56 -9.40 16 6 C 0.57 9.09 7.81 -12.33 -0.10 9.00 16 7 O -0.53 -10.58 16.59 5.31 0.09 -10.49 16 8 C -0.12 -1.53 5.84 -105.03 -0.61 -2.15 16 9 C -0.11 -1.08 8.33 -39.25 -0.33 -1.41 16 10 C -0.12 -0.97 9.65 -39.55 -0.38 -1.35 16 11 C -0.10 -0.89 5.82 -104.47 -0.61 -1.50 16 12 C -0.08 -0.82 5.77 -104.61 -0.60 -1.43 16 13 C -0.06 -0.69 9.22 -39.11 -0.36 -1.05 16 14 C -0.12 -0.87 6.00 -27.87 -0.17 -1.03 16 15 C 0.06 0.38 6.85 37.14 0.25 0.64 16 16 O -0.38 -3.19 10.80 -35.23 -0.38 -3.57 16 17 C 0.10 0.68 6.65 36.01 0.24 0.92 16 18 C 0.11 1.89 6.48 -2.13 -0.01 1.87 16 19 C -0.10 -1.59 2.62 -88.74 -0.23 -1.82 16 20 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 21 C 0.17 3.17 5.58 -4.04 -0.02 3.15 16 22 N -0.73 -18.43 5.52 -59.91 -0.33 -18.76 16 23 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 24 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 25 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 27 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 34 H 0.07 0.60 7.34 -51.93 -0.38 0.22 16 35 H 0.08 0.75 5.63 -51.93 -0.29 0.46 16 36 H 0.15 1.23 3.60 -52.49 -0.19 1.04 16 37 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.14 1.67 7.68 -52.49 -0.40 1.26 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.33 8.07 -51.93 -0.42 -0.09 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16 46 H 0.09 1.79 7.81 -51.93 -0.41 1.38 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.02 0.40 7.99 -51.93 -0.42 -0.01 16 49 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 50 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -34.63 395.83 -10.48 -45.11 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.82 Total: 6.61 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -3.15 Total: -5.14 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.17 Total: -56.04 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.29 Total: -14.06 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.63 -10.48 -45.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325543392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.097 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds