Wall clock time and date at job start Wed Apr 1 2020 03:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.28824 * 2 1 4 4 C 1.54000 * 110.32668 * 122.13668 * 2 1 3 5 5 N 1.47481 * 107.08597 * 117.58584 * 4 2 1 6 6 C 1.34779 * 127.03455 * 205.41165 * 5 4 2 7 7 O 1.21561 * 120.00160 * 173.40257 * 6 5 4 8 8 C 1.47847 * 119.99995 * 353.39969 * 6 5 4 9 9 C 1.39596 * 120.22218 * 348.97288 * 8 6 5 10 10 C 1.37751 * 119.73912 * 179.86807 * 9 8 6 11 11 C 1.38800 * 120.50796 * 0.51347 * 10 9 8 12 12 C 1.38081 * 120.00764 * 359.52155 * 11 10 9 13 13 C 1.38334 * 120.01509 * 0.33796 * 12 11 10 14 14 C 1.50764 * 121.33401 * 180.65357 * 12 11 10 15 15 C 1.52957 * 109.78837 * 342.78924 * 14 12 11 16 16 O 1.43200 * 108.48818 * 49.21892 * 15 14 12 17 17 C 1.42707 * 113.13336 * 289.30343 * 16 15 14 18 18 C 1.48116 * 105.93531 * 25.44574 * 5 4 2 19 19 C 1.54618 * 110.32578 * 237.75281 * 2 1 3 20 20 H 1.09003 * 110.73996 * 337.59942 * 19 2 1 21 21 C 1.53011 * 110.73731 * 100.91989 * 19 2 1 22 22 N 1.46498 * 109.47099 * 184.99854 * 21 19 2 23 23 C 1.36933 * 119.99978 * 179.97438 * 22 21 19 24 24 H 1.08003 * 119.99613 * 0.02562 * 23 22 21 25 25 C 1.38808 * 120.00330 * 180.02562 * 23 22 21 26 26 N 1.31623 * 119.99730 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00223 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47510 * 60.00062 * 27 25 23 29 29 H 1.48502 * 109.47136 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47033 * 299.99574 * 27 25 23 31 31 H 1.08995 * 109.46775 * 299.31419 * 1 2 3 32 32 H 1.08991 * 109.46992 * 59.32220 * 1 2 3 33 33 H 1.09006 * 109.46884 * 179.32042 * 1 2 3 34 34 H 1.08999 * 109.91246 * 236.94793 * 4 2 1 35 35 H 1.09005 * 109.91574 * 358.03082 * 4 2 1 36 36 H 1.08000 * 120.12892 * 0.12924 * 9 8 6 37 37 H 1.08008 * 119.74327 * 180.24278 * 10 9 8 38 38 H 1.07999 * 119.91268 * 179.73596 * 13 12 11 39 39 H 1.09004 * 109.41974 * 102.89116 * 14 12 11 40 40 H 1.09005 * 109.41803 * 222.69507 * 14 12 11 41 41 H 1.09000 * 109.63154 * 289.51676 * 15 14 12 42 42 H 1.09003 * 109.79529 * 169.01867 * 15 14 12 43 43 H 1.09003 * 109.33796 * 291.70977 * 17 16 15 44 44 H 1.09002 * 109.20736 * 172.11266 * 17 16 15 45 45 H 1.09001 * 110.66143 * 79.14936 * 18 5 4 46 46 H 1.08998 * 110.66530 * 202.26978 * 18 5 4 47 47 H 1.08996 * 109.47296 * 305.00405 * 21 19 2 48 48 H 1.09001 * 109.46483 * 64.99836 * 21 19 2 49 49 H 0.96998 * 120.00272 * 0.02562 * 22 21 19 50 50 H 0.96998 * 119.99785 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8277 -1.9217 0.7102 6 6 3.0625 -3.0868 1.3459 7 8 3.6069 -4.0009 0.7580 8 6 2.6578 -3.2530 2.7581 9 6 2.2461 -2.1484 3.5058 10 6 1.8687 -2.3151 4.8201 11 6 1.9046 -3.5712 5.4096 12 6 2.3116 -4.6673 4.6752 13 6 2.6904 -4.5130 3.3537 14 6 2.3481 -6.0473 5.2811 15 6 2.3083 -5.9442 6.8067 16 8 1.2380 -5.0670 7.1748 17 6 1.4977 -3.7007 6.8550 18 6 3.2836 -1.5377 -0.6457 19 6 2.0671 -0.7736 -1.2263 20 1 1.3174 -1.4700 -1.6020 21 6 2.5095 0.1939 -2.3260 22 7 2.9003 -0.5655 -3.5163 23 6 3.3343 0.0923 -4.6361 24 1 3.3888 1.1709 -4.6417 25 6 3.7041 -0.6272 -5.7642 26 7 3.6372 -1.9417 -5.7575 27 14 4.2968 0.2701 -7.2915 28 1 5.5067 1.0651 -6.9606 29 1 4.6275 -0.7183 -8.3493 30 1 3.2268 1.1769 -7.7794 31 1 -0.3633 0.5031 0.8960 32 1 -0.3633 0.5243 -0.8838 33 1 -0.3633 -1.0277 -0.0122 34 1 2.7181 -0.1227 1.8101 35 1 1.2335 -1.1128 1.8377 36 1 2.2197 -1.1676 3.0544 37 1 1.5464 -1.4611 5.3974 38 1 3.0125 -5.3708 2.7821 39 1 1.4872 -6.6186 4.9339 40 1 3.2643 -6.5530 4.9759 41 1 3.2535 -5.5420 7.1714 42 1 2.1389 -6.9304 7.2390 43 1 2.3005 -3.3275 7.4908 44 1 0.5960 -3.1138 7.0302 45 1 4.1554 -0.8859 -0.5880 46 1 3.5026 -2.4227 -1.2429 47 1 1.6851 0.8618 -2.5756 48 1 3.3584 0.7802 -1.9741 49 1 2.8510 -1.5342 -3.5114 50 1 3.8959 -2.4445 -6.5456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325543392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:40 Heat of formation + Delta-G solvation = -53.597888 kcal Electronic energy + Delta-G solvation = -29833.041723 eV Core-core repulsion = 25824.608153 eV Total energy + Delta-G solvation = -4008.433569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86545 -40.83281 -39.25020 -38.23801 -36.52187 -34.54682 -33.93257 -33.07676 -32.92136 -30.88371 -30.32560 -28.00625 -27.43155 -26.41164 -25.07372 -24.83598 -23.37574 -22.88332 -21.70700 -21.14799 -20.55193 -19.13766 -18.22303 -17.87966 -17.45220 -17.01236 -16.86473 -16.52766 -16.45309 -15.99153 -15.66093 -15.45292 -15.21692 -15.14178 -14.88492 -14.77525 -14.41667 -14.38010 -14.20980 -13.91135 -13.68398 -13.53184 -13.34215 -13.26113 -12.96033 -12.77507 -12.72581 -12.54159 -12.46141 -12.20709 -12.06083 -11.95541 -11.77933 -11.64307 -11.57303 -11.34643 -11.14926 -10.93196 -10.67071 -9.98694 -9.76519 -9.65428 -9.01188 -7.95174 -5.25000 -0.28384 0.28110 1.45841 1.49735 1.55829 1.66101 1.79189 2.55434 2.68444 2.92973 3.26294 3.38456 3.47120 3.56698 3.65503 3.69695 3.80125 3.81507 4.00496 4.14078 4.18364 4.19645 4.25408 4.34543 4.40703 4.42898 4.50866 4.51651 4.54214 4.59496 4.71481 4.76442 4.79604 4.80090 4.82584 4.85664 4.91647 4.99066 5.04801 5.07728 5.18569 5.22287 5.24388 5.30906 5.34605 5.43398 5.48241 5.53162 5.83137 6.12208 6.25877 6.42168 6.96042 7.31593 8.08203 8.29655 9.28408 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023651 B = 0.002067 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.600222 B =13543.856823 C =14416.748400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.111 0.889 4 C 0.091 3.909 5 N -0.613 5.613 6 C 0.563 3.437 7 O -0.593 6.593 8 C -0.145 4.145 9 C -0.106 4.106 10 C -0.110 4.110 11 C -0.099 4.099 12 C -0.093 4.093 13 C -0.078 4.078 14 C -0.118 4.118 15 C 0.059 3.941 16 O -0.393 6.393 17 C 0.096 3.904 18 C 0.116 3.884 19 C -0.093 4.093 20 H 0.062 0.938 21 C 0.165 3.835 22 N -0.749 5.749 23 C -0.243 4.243 24 H 0.081 0.919 25 C -0.082 4.082 26 N -0.974 5.974 27 Si 0.977 3.023 28 H -0.276 1.276 29 H -0.299 1.299 30 H -0.275 1.275 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.129 0.871 45 H 0.079 0.921 46 H 0.044 0.956 47 H 0.033 0.967 48 H 0.032 0.968 49 H 0.370 0.630 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.169 1.708 32.942 33.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.129 0.871 4 C -0.030 4.030 5 N -0.344 5.344 6 C 0.355 3.645 7 O -0.476 6.476 8 C -0.148 4.148 9 C -0.124 4.124 10 C -0.127 4.127 11 C -0.100 4.100 12 C -0.093 4.093 13 C -0.097 4.097 14 C -0.155 4.155 15 C -0.017 4.017 16 O -0.312 6.312 17 C 0.020 3.980 18 C -0.006 4.006 19 C -0.113 4.113 20 H 0.081 0.919 21 C 0.039 3.961 22 N -0.391 5.391 23 C -0.375 4.375 24 H 0.099 0.901 25 C -0.274 4.274 26 N -0.625 5.625 27 Si 0.806 3.194 28 H -0.202 1.202 29 H -0.226 1.226 30 H -0.201 1.201 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.190 0.810 37 H 0.189 0.811 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.136 0.864 43 H 0.106 0.894 44 H 0.147 0.853 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.201 0.799 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.003 1.258 32.686 33.451 hybrid contribution 0.952 -0.631 -2.152 2.436 sum -6.051 0.627 30.534 31.134 Atomic orbital electron populations 1.21839 0.92793 1.01698 1.03343 1.22164 0.97443 1.00137 0.91281 0.87061 1.23013 0.96520 0.86374 0.97108 1.48734 1.53012 1.15234 1.17454 1.18578 0.78323 0.80495 0.87108 1.90763 1.46518 1.41232 1.69056 1.19743 1.06549 0.96266 0.92194 1.22428 0.95698 0.99450 0.94830 1.21376 0.99479 0.97479 0.94407 1.20886 0.97490 0.93509 0.98124 1.19666 0.99923 0.96765 0.92943 1.21181 0.97305 0.96386 0.94824 1.21202 1.04103 0.92819 0.97352 1.22762 0.90661 0.95793 0.92503 1.88061 1.43079 1.17785 1.82254 1.21748 1.03559 0.83687 0.88975 1.22407 0.97619 0.98415 0.82189 1.22398 0.96045 0.97251 0.95575 0.91936 1.20809 0.96918 0.93069 0.85331 1.42650 1.79290 1.05671 1.11530 1.19640 1.34418 0.91885 0.91515 0.90063 1.25660 1.03679 0.96258 1.01781 1.69847 1.56275 1.06250 1.30094 0.85158 0.78457 0.77013 0.78813 1.20195 1.22557 1.20058 0.89203 0.92559 0.93812 0.87638 0.87568 0.81047 0.81063 0.86675 0.89712 0.88830 0.91548 0.86393 0.89363 0.85302 0.90255 0.93763 0.94909 0.95058 0.79903 0.94156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.89 71.98 0.64 -1.76 16 2 C -0.09 -1.81 3.17 -9.90 -0.03 -1.84 16 3 H 0.11 1.82 7.85 -2.39 -0.02 1.80 16 4 C 0.09 1.62 4.63 86.53 0.40 2.02 16 5 N -0.61 -17.84 3.29 -812.79 -2.67 -20.52 16 6 C 0.56 18.95 7.81 86.79 0.68 19.63 16 7 O -0.59 -26.02 16.59 -3.91 -0.06 -26.08 16 8 C -0.14 -3.69 5.84 -20.13 -0.12 -3.80 16 9 C -0.11 -1.76 8.33 22.48 0.19 -1.57 16 10 C -0.11 -1.31 9.65 22.29 0.22 -1.09 16 11 C -0.10 -1.44 5.82 -19.76 -0.11 -1.56 16 12 C -0.09 -1.76 5.77 -19.86 -0.11 -1.88 16 13 C -0.08 -1.95 9.22 22.57 0.21 -1.74 16 14 C -0.12 -1.72 6.00 29.85 0.18 -1.54 16 15 C 0.06 0.65 6.85 71.97 0.49 1.15 16 16 O -0.39 -5.59 10.80 -148.98 -1.61 -7.20 16 17 C 0.10 0.95 6.65 71.24 0.47 1.42 16 18 C 0.12 4.05 6.48 86.73 0.56 4.61 16 19 C -0.09 -2.94 2.62 -9.58 -0.03 -2.96 16 20 H 0.06 2.26 7.86 -2.39 -0.02 2.24 16 21 C 0.17 6.31 5.58 86.38 0.48 6.79 16 22 N -0.75 -38.78 5.52 -343.44 -1.90 -40.67 16 23 C -0.24 -13.72 9.99 84.03 0.84 -12.88 16 24 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 25 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 26 N -0.97 -62.19 13.06 21.65 0.28 -61.91 16 27 Si 0.98 47.08 29.55 68.60 2.03 49.10 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 30 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 0.86 8.13 -2.38 -0.02 0.84 16 34 H 0.11 1.26 7.34 -2.39 -0.02 1.24 16 35 H 0.11 1.48 5.63 -2.38 -0.01 1.47 16 36 H 0.17 2.00 3.60 -2.91 -0.01 1.99 16 37 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 38 H 0.12 3.23 7.68 -2.91 -0.02 3.21 16 39 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.07 0.61 8.07 -2.39 -0.02 0.59 16 42 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 2.68 7.94 -2.39 -0.02 2.66 16 46 H 0.04 1.93 7.81 -2.39 -0.02 1.91 16 47 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.03 1.16 7.99 -2.39 -0.02 1.14 16 49 H 0.37 21.06 7.67 -92.71 -0.71 20.35 16 50 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -81.39 395.83 1.73 -79.66 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.24 Total: 29.00 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 5.42 Total: -1.39 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -4.29 Total: -123.10 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.67 Total: -33.28 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Total: -81.39 1.73 -79.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325543392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.060 kcal (2) G-P(sol) polarization free energy of solvation -81.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds