Wall clock time and date at job start Wed Apr 1 2020 03:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47199 * 2 1 4 4 N 1.46498 * 109.47189 * 120.00205 * 2 1 3 5 5 C 1.46495 * 120.00057 * 52.28918 * 4 2 1 6 6 C 1.34778 * 120.00007 * 232.28799 * 4 2 1 7 7 O 1.21350 * 119.99763 * 5.53122 * 6 4 2 8 8 C 1.49454 * 120.00094 * 185.52553 * 6 4 2 9 9 O 1.21342 * 120.00004 * 354.85081 * 8 6 4 10 10 N 1.34776 * 119.99751 * 174.84910 * 8 6 4 11 11 C 1.46496 * 119.99604 * 179.72358 * 10 8 6 12 12 C 1.50700 * 109.47319 * 180.02562 * 11 10 8 13 13 C 1.38644 * 119.75006 * 269.73402 * 12 11 10 14 14 C 1.37613 * 120.24455 * 179.71867 * 13 12 11 15 15 C 1.40721 * 119.74778 * 0.56958 * 14 13 12 16 16 C 1.41392 * 120.24048 * 179.68417 * 15 14 13 17 17 H 1.08006 * 119.99587 * 169.52945 * 16 15 14 18 18 C 1.39944 * 120.00574 * 349.52007 * 16 15 14 19 19 N 1.30820 * 119.99934 * 323.31520 * 18 16 15 20 20 Si 1.86802 * 120.00134 * 143.30799 * 18 16 15 21 21 H 1.48503 * 109.46889 * 95.00003 * 20 18 16 22 22 H 1.48489 * 109.47260 * 214.99891 * 20 18 16 23 23 H 1.48505 * 109.47217 * 335.00440 * 20 18 16 24 24 C 1.40710 * 119.51106 * 359.70249 * 15 14 13 25 25 C 1.37622 * 119.74409 * 359.97438 * 24 15 14 26 26 C 1.53005 * 109.47099 * 240.00038 * 2 1 3 27 27 C 1.52990 * 115.55107 * 297.42141 * 26 2 1 28 28 C 1.52998 * 117.49660 * 151.75105 * 26 2 1 29 29 C 1.53001 * 117.49524 * 83.09368 * 26 2 1 30 30 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47136 * 299.99847 * 1 2 3 32 32 H 1.09007 * 109.46932 * 59.99661 * 1 2 3 33 33 H 1.09002 * 109.46867 * 233.65661 * 5 4 2 34 34 H 1.09001 * 109.47144 * 353.65759 * 5 4 2 35 35 H 1.08996 * 109.47401 * 113.65904 * 5 4 2 36 36 H 0.96998 * 120.00341 * 0.02562 * 10 8 6 37 37 H 1.08996 * 109.47611 * 300.00234 * 11 10 8 38 38 H 1.09006 * 109.47001 * 60.00466 * 11 10 8 39 39 H 1.08000 * 119.87151 * 359.97158 * 13 12 11 40 40 H 1.08002 * 120.12684 * 180.27568 * 14 13 12 41 41 H 0.97000 * 120.00238 * 179.97438 * 19 18 16 42 42 H 1.07993 * 120.12962 * 179.97438 * 24 15 14 43 43 H 1.08003 * 119.87684 * 179.97438 * 25 24 15 44 44 H 1.09001 * 109.47074 * 50.73061 * 27 26 2 45 45 H 1.09004 * 109.47320 * 170.73239 * 27 26 2 46 46 H 1.09001 * 109.47328 * 290.73418 * 27 26 2 47 47 H 1.09005 * 117.50107 * 359.97438 * 28 26 2 48 48 H 1.09001 * 117.50414 * 145.01997 * 28 26 2 49 49 H 1.09002 * 117.49600 * 214.97619 * 29 26 2 50 50 H 1.09002 * 117.50215 * 359.97438 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5309 -2.0345 1.5163 6 6 2.9161 -0.0897 2.0019 7 8 3.2444 1.0599 1.7937 8 6 3.5073 -0.8390 3.1520 9 8 3.1113 -1.9550 3.4169 10 7 4.4803 -0.2752 3.8949 11 6 5.0555 -1.0073 5.0259 12 6 6.1146 -0.1619 5.6852 13 6 7.4312 -0.2535 5.2602 14 6 8.4055 0.5179 5.8511 15 6 8.0634 1.3933 6.8985 16 6 9.0574 2.1858 7.5175 17 1 8.7727 2.9741 8.1987 18 6 10.4100 1.9487 7.2478 19 7 10.8382 0.7243 7.0778 20 14 11.6039 3.3806 7.1303 21 1 12.2665 3.5815 8.4441 22 1 12.6301 3.0860 6.0983 23 1 10.8642 4.6125 6.7555 24 6 6.7251 1.4738 7.3253 25 6 5.7660 0.6978 6.7153 26 6 2.0400 -0.7213 -1.2493 27 6 1.6607 -2.1993 -1.3590 28 6 3.4026 -0.2987 -1.8021 29 6 2.1216 0.0854 -2.5468 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.1440 -2.0474 2.5353 34 1 0.7359 -2.3076 0.8224 35 1 2.3500 -2.7484 1.4297 36 1 4.7966 0.6170 3.6834 37 1 4.2714 -1.2350 5.7480 38 1 5.5013 -1.9357 4.6688 39 1 7.6922 -0.9299 4.4597 40 1 9.4297 0.4483 5.5156 41 1 11.7756 0.5600 6.8905 42 1 6.4515 2.1419 8.1284 43 1 4.7382 0.7576 7.0415 44 1 0.5873 -2.3113 -1.2057 45 1 1.9270 -2.5704 -2.3487 46 1 2.1973 -2.7695 -0.6007 47 1 3.9356 0.4934 -1.2761 48 1 4.0287 -1.0737 -2.2443 49 1 1.9054 -0.4371 -3.4787 50 1 1.8116 1.1298 -2.5106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326166912.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:44 Heat of formation + Delta-G solvation = -26.300049 kcal Electronic energy + Delta-G solvation = -29592.285530 eV Core-core repulsion = 25585.035684 eV Total energy + Delta-G solvation = -4007.249846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.87738 -39.21755 -38.01256 -37.56750 -35.77235 -34.67999 -33.52387 -31.14303 -30.47907 -29.34341 -29.13557 -27.38521 -26.84208 -25.24520 -23.73006 -22.58320 -22.28919 -21.08916 -20.19198 -19.95874 -18.90374 -17.74471 -17.46553 -17.04746 -16.32271 -15.67913 -15.60326 -15.37795 -14.94365 -14.71562 -14.48437 -14.21514 -13.87154 -13.82560 -13.40398 -13.37498 -13.20678 -12.79140 -12.66103 -12.59681 -12.52895 -12.14043 -12.08479 -12.05502 -11.99308 -11.72449 -11.65519 -11.35920 -11.14021 -11.13768 -11.03506 -10.74654 -10.62444 -10.57600 -10.03299 -9.77751 -9.55752 -9.28268 -9.01737 -8.93332 -8.71454 -7.67241 -7.52813 -7.10894 -4.43992 1.57539 2.28599 2.65822 2.95807 2.99156 3.01483 3.13004 3.34869 3.46520 3.76592 3.77998 4.24323 4.33536 4.44133 4.63449 4.65668 4.71500 4.91056 4.99372 5.07085 5.29473 5.37078 5.40437 5.49019 5.54962 5.58360 5.59892 5.67201 5.69590 5.73809 5.77960 5.86357 5.87585 5.89161 6.01070 6.21812 6.25724 6.28187 6.33145 6.63399 6.84051 6.89901 6.97528 7.18717 7.25550 7.48351 7.49721 7.76336 7.91333 7.93118 8.03658 8.14319 8.24030 8.48824 8.73754 8.86800 9.82571 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.002062 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.197875 B =13577.594902 C =14272.878201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.170 3.830 3 H 0.103 0.897 4 N -0.583 5.583 5 C 0.085 3.915 6 C 0.507 3.493 7 O -0.522 6.522 8 C 0.497 3.503 9 O -0.531 6.531 10 N -0.683 5.683 11 C 0.185 3.815 12 C -0.268 4.268 13 C -0.069 4.069 14 C -0.197 4.197 15 C 0.116 3.884 16 C -0.457 4.457 17 H 0.084 0.916 18 C 0.089 3.911 19 N -0.752 5.752 20 Si 0.898 3.102 21 H -0.268 1.268 22 H -0.272 1.272 23 H -0.255 1.255 24 C -0.242 4.242 25 C -0.058 4.058 26 C -0.142 4.142 27 C -0.120 4.120 28 C -0.170 4.170 29 C -0.165 4.165 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.286 0.714 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.097 0.903 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.210 -4.004 -15.624 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 H 0.121 0.879 4 N -0.316 5.316 5 C -0.057 4.057 6 C 0.290 3.710 7 O -0.398 6.398 8 C 0.277 3.723 9 O -0.409 6.409 10 N -0.335 5.335 11 C 0.065 3.935 12 C -0.269 4.269 13 C -0.087 4.087 14 C -0.216 4.216 15 C 0.114 3.886 16 C -0.483 4.483 17 H 0.102 0.898 18 C -0.136 4.136 19 N -0.373 5.373 20 Si 0.721 3.279 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.179 1.179 24 C -0.261 4.261 25 C -0.077 4.077 26 C -0.143 4.143 27 C -0.176 4.176 28 C -0.207 4.207 29 C -0.203 4.203 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.248 0.752 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.132 0.868 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.115 0.885 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.100 -4.379 -15.532 22.100 hybrid contribution 0.859 0.878 -0.152 1.238 sum -14.241 -3.501 -15.684 21.472 Atomic orbital electron populations 1.22116 0.94030 1.02757 1.02712 1.20646 0.94214 0.96794 0.81584 0.87919 1.47674 1.41806 1.18216 1.23910 1.22124 0.99839 0.82132 1.01609 1.20502 0.79986 0.86772 0.83762 1.90742 1.60212 1.16871 1.71983 1.20034 0.81736 0.86627 0.83900 1.90710 1.60943 1.18973 1.70311 1.46545 1.35877 1.20916 1.30115 1.20067 0.94321 0.93531 0.85626 1.18808 0.93321 1.08842 1.05968 1.20483 0.92582 0.97913 0.97771 1.21206 0.98607 1.01864 0.99940 1.17594 0.91682 0.89429 0.89942 1.19665 0.90031 1.14980 1.23668 0.89818 1.26068 0.99842 0.96162 0.91498 1.69958 1.17581 1.21544 1.28251 0.86466 0.79482 0.82817 0.79152 1.19260 1.19688 1.17870 1.20800 0.93902 1.06588 1.04835 1.20373 0.96845 0.95294 0.95141 1.21804 1.01695 0.96368 0.94468 1.21527 1.01379 0.92682 1.02050 1.23062 0.90518 1.03626 1.03496 1.23031 1.01981 1.00505 0.94738 0.91747 0.91912 0.91027 0.90737 0.91039 0.91314 0.75225 0.91964 0.91893 0.89549 0.86819 0.90266 0.88991 0.89472 0.91909 0.92544 0.91479 0.88479 0.88764 0.88604 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.85 37.16 0.33 -0.85 16 2 C 0.17 1.67 2.61 -67.93 -0.18 1.50 16 3 H 0.10 1.19 6.89 -51.93 -0.36 0.83 16 4 N -0.58 -6.82 2.76 -174.44 -0.48 -7.30 16 5 C 0.09 0.86 6.79 59.84 0.41 1.26 16 6 C 0.51 7.54 7.73 -11.58 -0.09 7.45 16 7 O -0.52 -8.82 15.84 5.50 0.09 -8.73 16 8 C 0.50 8.00 7.81 -11.58 -0.09 7.91 16 9 O -0.53 -8.95 13.26 5.50 0.07 -8.88 16 10 N -0.68 -11.53 5.54 -61.91 -0.34 -11.87 16 11 C 0.19 3.34 5.79 -5.20 -0.03 3.31 16 12 C -0.27 -5.61 5.27 -104.33 -0.55 -6.16 16 13 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 14 C -0.20 -4.95 8.89 -38.87 -0.35 -5.30 16 15 C 0.12 3.01 5.68 -106.83 -0.61 2.40 16 16 C -0.46 -11.67 8.96 -37.74 -0.34 -12.01 16 17 H 0.08 2.06 8.05 -52.48 -0.42 1.64 16 18 C 0.09 2.12 4.82 -17.34 -0.08 2.03 16 19 N -0.75 -18.36 11.35 55.55 0.63 -17.73 16 20 Si 0.90 17.57 29.68 -169.99 -5.05 12.53 16 21 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 24 C -0.24 -5.78 9.80 -38.87 -0.38 -6.16 16 25 C -0.06 -1.25 9.67 -39.66 -0.38 -1.64 16 26 C -0.14 -1.22 1.82 -154.51 -0.28 -1.50 16 27 C -0.12 -0.86 7.94 37.15 0.29 -0.57 16 28 C -0.17 -1.58 9.95 -26.69 -0.27 -1.85 16 29 C -0.16 -1.23 9.92 -26.69 -0.26 -1.49 16 30 H 0.06 0.41 5.33 -51.93 -0.28 0.14 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.83 7.03 -51.93 -0.36 0.46 16 34 H 0.07 0.53 4.50 -51.93 -0.23 0.29 16 35 H 0.07 0.75 6.88 -51.93 -0.36 0.40 16 36 H 0.41 7.06 7.95 -40.82 -0.32 6.73 16 37 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 38 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.11 2.93 5.94 -52.49 -0.31 2.62 16 41 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 42 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 43 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 44 H 0.06 0.38 6.21 -51.93 -0.32 0.06 16 45 H 0.06 0.37 8.06 -51.93 -0.42 -0.05 16 46 H 0.07 0.54 6.06 -51.93 -0.31 0.22 16 47 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 402.08 15.07 6.06 6.06 Total: -1.00 -27.44 402.08 -9.74 -37.19 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -7.48 Total: 12.34 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -3.24 Total: -13.59 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.19 Total: -36.91 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.16 Total: -17.62 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.05 Total: 12.53 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -27.44 -9.74 -37.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326166912.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.887 kcal (2) G-P(sol) polarization free energy of solvation -27.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds