Wall clock time and date at job start Wed Apr 1 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47199 * 2 1 4 4 N 1.46498 * 109.47189 * 120.00205 * 2 1 3 5 5 C 1.46495 * 120.00057 * 52.28918 * 4 2 1 6 6 C 1.34778 * 120.00007 * 232.28799 * 4 2 1 7 7 O 1.21350 * 119.99763 * 5.53122 * 6 4 2 8 8 C 1.49454 * 120.00094 * 185.52553 * 6 4 2 9 9 O 1.21342 * 120.00004 * 354.85081 * 8 6 4 10 10 N 1.34776 * 119.99751 * 174.84910 * 8 6 4 11 11 C 1.46496 * 119.99604 * 179.72358 * 10 8 6 12 12 C 1.50700 * 109.47319 * 180.02562 * 11 10 8 13 13 C 1.38644 * 119.75006 * 269.73402 * 12 11 10 14 14 C 1.37613 * 120.24455 * 179.71867 * 13 12 11 15 15 C 1.40721 * 119.74778 * 0.56958 * 14 13 12 16 16 C 1.41392 * 120.24048 * 179.68417 * 15 14 13 17 17 H 1.08006 * 119.99587 * 169.52945 * 16 15 14 18 18 C 1.39944 * 120.00574 * 349.52007 * 16 15 14 19 19 N 1.30820 * 119.99934 * 323.31520 * 18 16 15 20 20 Si 1.86802 * 120.00134 * 143.30799 * 18 16 15 21 21 H 1.48503 * 109.46889 * 95.00003 * 20 18 16 22 22 H 1.48489 * 109.47260 * 214.99891 * 20 18 16 23 23 H 1.48505 * 109.47217 * 335.00440 * 20 18 16 24 24 C 1.40710 * 119.51106 * 359.70249 * 15 14 13 25 25 C 1.37622 * 119.74409 * 359.97438 * 24 15 14 26 26 C 1.53005 * 109.47099 * 240.00038 * 2 1 3 27 27 C 1.52990 * 115.55107 * 297.42141 * 26 2 1 28 28 C 1.52998 * 117.49660 * 151.75105 * 26 2 1 29 29 C 1.53001 * 117.49524 * 83.09368 * 26 2 1 30 30 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47136 * 299.99847 * 1 2 3 32 32 H 1.09007 * 109.46932 * 59.99661 * 1 2 3 33 33 H 1.09002 * 109.46867 * 233.65661 * 5 4 2 34 34 H 1.09001 * 109.47144 * 353.65759 * 5 4 2 35 35 H 1.08996 * 109.47401 * 113.65904 * 5 4 2 36 36 H 0.96998 * 120.00341 * 0.02562 * 10 8 6 37 37 H 1.08996 * 109.47611 * 300.00234 * 11 10 8 38 38 H 1.09006 * 109.47001 * 60.00466 * 11 10 8 39 39 H 1.08000 * 119.87151 * 359.97158 * 13 12 11 40 40 H 1.08002 * 120.12684 * 180.27568 * 14 13 12 41 41 H 0.97000 * 120.00238 * 179.97438 * 19 18 16 42 42 H 1.07993 * 120.12962 * 179.97438 * 24 15 14 43 43 H 1.08003 * 119.87684 * 179.97438 * 25 24 15 44 44 H 1.09001 * 109.47074 * 50.73061 * 27 26 2 45 45 H 1.09004 * 109.47320 * 170.73239 * 27 26 2 46 46 H 1.09001 * 109.47328 * 290.73418 * 27 26 2 47 47 H 1.09005 * 117.50107 * 359.97438 * 28 26 2 48 48 H 1.09001 * 117.50414 * 145.01997 * 28 26 2 49 49 H 1.09002 * 117.49600 * 214.97619 * 29 26 2 50 50 H 1.09002 * 117.50215 * 359.97438 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5309 -2.0345 1.5163 6 6 2.9161 -0.0897 2.0019 7 8 3.2444 1.0599 1.7937 8 6 3.5073 -0.8390 3.1520 9 8 3.1113 -1.9550 3.4169 10 7 4.4803 -0.2752 3.8949 11 6 5.0555 -1.0073 5.0259 12 6 6.1146 -0.1619 5.6852 13 6 7.4312 -0.2535 5.2602 14 6 8.4055 0.5179 5.8511 15 6 8.0634 1.3933 6.8985 16 6 9.0574 2.1858 7.5175 17 1 8.7727 2.9741 8.1987 18 6 10.4100 1.9487 7.2478 19 7 10.8382 0.7243 7.0778 20 14 11.6039 3.3806 7.1303 21 1 12.2665 3.5815 8.4441 22 1 12.6301 3.0860 6.0983 23 1 10.8642 4.6125 6.7555 24 6 6.7251 1.4738 7.3253 25 6 5.7660 0.6978 6.7153 26 6 2.0400 -0.7213 -1.2493 27 6 1.6607 -2.1993 -1.3590 28 6 3.4026 -0.2987 -1.8021 29 6 2.1216 0.0854 -2.5468 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.1440 -2.0474 2.5353 34 1 0.7359 -2.3076 0.8224 35 1 2.3500 -2.7484 1.4297 36 1 4.7966 0.6170 3.6834 37 1 4.2714 -1.2350 5.7480 38 1 5.5013 -1.9357 4.6688 39 1 7.6922 -0.9299 4.4597 40 1 9.4297 0.4483 5.5156 41 1 11.7756 0.5600 6.8905 42 1 6.4515 2.1419 8.1284 43 1 4.7382 0.7576 7.0415 44 1 0.5873 -2.3113 -1.2057 45 1 1.9270 -2.5704 -2.3487 46 1 2.1973 -2.7695 -0.6007 47 1 3.9356 0.4934 -1.2761 48 1 4.0287 -1.0737 -2.2443 49 1 1.9054 -0.4371 -3.4787 50 1 1.8116 1.1298 -2.5106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326166912.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:43 Heat of formation + Delta-G solvation = -40.196588 kcal Electronic energy + Delta-G solvation = -29592.888129 eV Core-core repulsion = 25585.035684 eV Total energy + Delta-G solvation = -4007.852445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.99233 -40.30292 -39.44243 -38.93953 -36.88552 -36.13583 -35.12157 -32.20538 -31.91913 -31.17432 -29.77868 -28.98655 -27.68182 -26.54709 -25.09162 -23.37843 -23.24097 -22.92134 -21.85217 -21.20189 -19.69795 -19.31840 -18.93406 -18.15901 -17.37745 -17.19830 -16.84947 -16.51900 -16.25678 -15.85894 -15.69845 -15.43863 -15.35586 -15.10264 -14.76930 -14.50161 -14.33580 -13.96685 -13.86150 -13.62786 -13.54922 -13.35670 -13.29945 -13.19016 -12.96515 -12.80248 -12.78028 -12.75806 -12.47129 -12.41913 -12.38272 -12.18935 -11.78675 -11.54761 -11.35509 -11.31123 -10.85325 -10.71671 -10.45077 -10.23027 -9.78217 -9.50980 -9.37530 -8.89413 -6.33576 0.34275 0.79276 1.13876 1.28134 1.36399 1.47377 1.58630 2.11535 2.14103 2.39203 2.63191 2.88818 3.35365 3.56612 3.72394 3.77801 3.99447 3.99922 4.15229 4.18673 4.29117 4.29366 4.38904 4.50704 4.62522 4.65860 4.69619 4.72195 4.75259 4.84915 4.87690 4.94372 4.98966 5.01531 5.04397 5.08643 5.09529 5.19614 5.22979 5.23835 5.33550 5.38864 5.42244 5.45397 5.63734 5.87535 5.95266 6.05270 6.20184 6.27956 6.30606 6.62482 6.66822 6.85991 6.93966 7.00008 8.08010 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.002062 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.197875 B =13577.594902 C =14272.878201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.165 3.835 3 H 0.080 0.920 4 N -0.570 5.570 5 C 0.084 3.916 6 C 0.503 3.497 7 O -0.551 6.551 8 C 0.499 3.501 9 O -0.537 6.537 10 N -0.686 5.686 11 C 0.196 3.804 12 C -0.254 4.254 13 C -0.071 4.071 14 C -0.223 4.223 15 C 0.087 3.913 16 C -0.496 4.496 17 H 0.080 0.920 18 C 0.052 3.948 19 N -0.783 5.783 20 Si 0.972 3.028 21 H -0.256 1.256 22 H -0.262 1.262 23 H -0.260 1.260 24 C -0.261 4.261 25 C -0.057 4.057 26 C -0.143 4.143 27 C -0.118 4.118 28 C -0.191 4.191 29 C -0.145 4.145 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.410 0.590 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.297 0.703 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.115 0.885 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.101 -4.737 -17.405 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.063 3.937 3 H 0.099 0.901 4 N -0.302 5.302 5 C -0.057 4.057 6 C 0.286 3.714 7 O -0.429 6.429 8 C 0.280 3.720 9 O -0.415 6.415 10 N -0.337 5.337 11 C 0.074 3.926 12 C -0.255 4.255 13 C -0.090 4.090 14 C -0.243 4.243 15 C 0.084 3.916 16 C -0.523 4.523 17 H 0.098 0.902 18 C -0.170 4.170 19 N -0.405 5.405 20 Si 0.792 3.208 21 H -0.180 1.180 22 H -0.186 1.186 23 H -0.183 1.183 24 C -0.280 4.280 25 C -0.076 4.076 26 C -0.144 4.144 27 C -0.175 4.175 28 C -0.229 4.229 29 C -0.182 4.182 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.132 0.868 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.116 0.884 49 H 0.133 0.867 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.026 -5.149 -17.328 24.833 hybrid contribution 1.302 0.994 0.335 1.672 sum -15.724 -4.154 -16.993 23.522 Atomic orbital electron populations 1.22098 0.91662 1.03980 1.03254 1.20841 0.95955 0.95676 0.81252 0.90140 1.47819 1.40179 1.18647 1.23601 1.22227 1.00465 0.80889 1.02121 1.20286 0.80725 0.86465 0.83918 1.90734 1.61537 1.17886 1.72748 1.20221 0.81266 0.86511 0.83979 1.90707 1.61043 1.19218 1.70538 1.46353 1.36391 1.20845 1.30147 1.19902 0.93702 0.92944 0.86040 1.19070 0.93479 1.07902 1.05087 1.20713 0.92905 0.97519 0.97847 1.21201 0.98656 1.03438 1.00982 1.17940 0.92808 0.90152 0.90669 1.19886 0.91394 1.15778 1.25210 0.90219 1.26878 1.00950 0.98623 0.90566 1.69953 1.18630 1.23301 1.28644 0.85357 0.77042 0.78743 0.79691 1.18042 1.18629 1.18332 1.20998 0.93893 1.07564 1.05557 1.20669 0.97738 0.94435 0.94755 1.21834 1.00786 0.97445 0.94316 1.21546 1.02379 0.91147 1.02421 1.23031 0.91332 1.03560 1.04931 1.23107 0.99551 1.00775 0.94802 0.90096 0.92665 0.89272 0.91565 0.87745 0.91994 0.75365 0.90987 0.91461 0.87869 0.88258 0.89229 0.88567 0.86764 0.90099 0.91552 0.92387 0.90977 0.88408 0.86671 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.85 71.98 0.64 -1.21 16 2 C 0.16 2.99 2.61 44.99 0.12 3.11 16 3 H 0.08 1.85 6.89 -2.38 -0.02 1.84 16 4 N -0.57 -12.68 2.76 -824.16 -2.28 -14.95 16 5 C 0.08 1.52 6.79 127.77 0.87 2.39 16 6 C 0.50 14.81 7.73 87.27 0.67 15.48 16 7 O -0.55 -18.85 15.84 -3.25 -0.05 -18.91 16 8 C 0.50 15.68 7.81 87.27 0.68 16.36 16 9 O -0.54 -17.36 13.26 -3.22 -0.04 -17.40 16 10 N -0.69 -22.61 5.54 -468.15 -2.59 -25.20 16 11 C 0.20 6.76 5.79 85.63 0.50 7.25 16 12 C -0.25 -10.49 5.27 -19.67 -0.10 -10.59 16 13 C -0.07 -3.23 9.67 22.22 0.21 -3.02 16 14 C -0.22 -11.62 8.89 22.73 0.20 -11.41 16 15 C 0.09 4.66 5.68 -21.29 -0.12 4.54 16 16 C -0.50 -26.35 8.96 23.46 0.21 -26.14 16 17 H 0.08 4.11 8.05 -2.91 -0.02 4.09 16 18 C 0.05 2.52 4.82 85.26 0.41 2.93 16 19 N -0.78 -39.28 11.35 21.83 0.25 -39.04 16 20 Si 0.97 36.58 29.68 68.60 2.04 38.61 16 21 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 C -0.26 -12.72 9.80 22.73 0.22 -12.50 16 25 C -0.06 -2.46 9.67 22.22 0.21 -2.25 16 26 C -0.14 -2.15 1.82 -52.18 -0.09 -2.25 16 27 C -0.12 -1.34 7.94 71.98 0.57 -0.77 16 28 C -0.19 -3.45 9.95 30.62 0.30 -3.14 16 29 C -0.14 -1.84 9.92 30.62 0.30 -1.53 16 30 H 0.08 0.72 5.33 -2.39 -0.01 0.70 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.07 1.35 7.03 -2.39 -0.02 1.33 16 34 H 0.10 1.18 4.50 -2.39 -0.01 1.17 16 35 H 0.06 1.24 6.88 -2.39 -0.02 1.23 16 36 H 0.41 13.98 7.95 -92.71 -0.74 13.25 16 37 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 38 H 0.07 2.29 8.08 -2.38 -0.02 2.27 16 39 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 40 H 0.10 5.35 5.94 -2.91 -0.02 5.34 16 41 H 0.30 13.15 8.30 -92.71 -0.77 12.38 16 42 H 0.10 4.47 8.06 -2.91 -0.02 4.44 16 43 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 44 H 0.08 0.63 6.21 -2.39 -0.01 0.61 16 45 H 0.07 0.65 8.06 -2.38 -0.02 0.63 16 46 H 0.06 0.78 6.06 -2.39 -0.01 0.76 16 47 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 48 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -61.29 402.08 3.36 -57.93 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: 0.23 Total: 41.70 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 5.81 Total: -22.75 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -4.62 Total: -79.19 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.09 Total: -36.31 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.04 Total: 38.61 kcal Total: -61.29 3.36 -57.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326166912.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.734 kcal (2) G-P(sol) polarization free energy of solvation -61.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds