Wall clock time and date at job start Wed Apr 1 2020 03:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.64481 * 2 1 4 4 C 1.54323 * 110.71839 * 236.85575 * 2 1 3 5 5 N 1.47018 * 107.27252 * 219.44811 * 4 2 1 6 6 C 1.34784 * 125.64722 * 178.90573 * 5 4 2 7 7 O 1.21346 * 119.99779 * 359.97438 * 6 5 4 8 8 C 1.49449 * 119.99546 * 180.02562 * 6 5 4 9 9 O 1.21341 * 120.00649 * 0.26924 * 8 6 5 10 10 N 1.34784 * 119.99546 * 179.97438 * 8 6 5 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 6 12 12 H 1.09007 * 109.47230 * 34.99566 * 11 10 8 13 13 C 1.52990 * 109.47333 * 154.99849 * 11 10 8 14 14 C 1.50700 * 109.47298 * 295.00384 * 13 11 10 15 15 H 1.08005 * 119.99908 * 359.97438 * 14 13 11 16 16 C 1.37876 * 120.00214 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00022 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00089 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47029 * 60.00005 * 18 16 14 20 20 H 1.48501 * 109.47040 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47039 * 299.99988 * 18 16 14 22 22 C 1.50698 * 109.47310 * 275.00428 * 11 10 8 23 23 C 1.38239 * 119.99557 * 319.72041 * 22 11 10 24 24 C 1.38237 * 119.99856 * 179.76901 * 23 22 11 25 25 C 1.38234 * 120.00113 * 0.48733 * 24 23 22 26 26 C 1.38239 * 119.99777 * 359.79086 * 25 24 23 27 27 C 1.38227 * 120.00500 * 140.00096 * 22 11 10 28 28 C 1.47421 * 108.70378 * 359.17048 * 5 4 2 29 29 C 1.54688 * 104.94176 * 23.80900 * 28 5 4 30 30 H 1.08999 * 110.85196 * 81.33793 * 29 28 5 31 31 C 1.53004 * 111.10445 * 205.11004 * 29 28 5 32 32 H 1.08998 * 109.47672 * 181.69085 * 1 2 3 33 33 H 1.09004 * 109.46883 * 301.68991 * 1 2 3 34 34 H 1.09004 * 109.46805 * 61.68136 * 1 2 3 35 35 H 1.08995 * 109.88243 * 100.02980 * 4 2 1 36 36 H 1.09001 * 110.01124 * 338.93966 * 4 2 1 37 37 H 0.96999 * 120.00044 * 359.97438 * 10 8 6 38 38 H 1.09003 * 109.47330 * 55.00229 * 13 11 10 39 39 H 1.08999 * 109.47417 * 174.99813 * 13 11 10 40 40 H 0.97005 * 120.00061 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.00100 * 0.02562 * 23 22 11 42 42 H 1.07998 * 119.99801 * 180.26044 * 24 23 22 43 43 H 1.07999 * 120.00138 * 179.76825 * 25 24 23 44 44 H 1.08000 * 119.99602 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.00501 * 359.97438 * 27 22 11 46 46 H 1.09000 * 110.36679 * 142.74140 * 28 5 4 47 47 H 1.09006 * 110.36437 * 265.06096 * 28 5 4 48 48 H 1.08992 * 109.47265 * 172.36961 * 31 29 28 49 49 H 1.09001 * 109.46957 * 292.37360 * 31 29 28 50 50 H 1.08999 * 109.47071 * 52.36601 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2444 -1.5496 -0.7416 6 6 3.9913 -2.3823 -1.4935 7 8 3.7171 -2.5543 -2.6630 8 6 5.1564 -3.0947 -0.8864 9 8 5.4271 -2.9272 0.2845 10 7 5.9031 -3.9278 -1.6382 11 6 7.0455 -4.6257 -1.0433 12 1 6.8178 -4.8786 -0.0077 13 6 7.3271 -5.9067 -1.8310 14 6 6.1626 -6.8521 -1.6856 15 1 5.3073 -6.5679 -1.0905 16 6 6.1890 -8.0799 -2.3123 17 7 7.2303 -8.4259 -3.0375 18 14 4.7458 -9.2521 -2.1315 19 1 3.5157 -8.6075 -2.6571 20 1 5.0191 -10.4954 -2.8962 21 1 4.5557 -9.5856 -0.6970 22 6 8.2583 -3.7322 -1.0870 23 6 8.5051 -2.9563 -2.2041 24 6 9.6150 -2.1330 -2.2423 25 6 10.4834 -2.0933 -1.1675 26 6 10.2396 -2.8736 -0.0528 27 6 9.1269 -3.6929 -0.0125 28 6 3.4598 -1.2554 0.6868 29 6 2.0789 -0.7976 1.2124 30 1 1.4446 -1.6557 1.4351 31 6 2.2277 0.1037 2.4398 32 1 -0.3634 -1.0272 0.0303 33 1 -0.3633 0.5399 0.8745 34 1 -0.3633 0.4875 -0.9047 35 1 2.3741 -0.0991 -1.9978 36 1 1.3139 -1.4730 -1.5826 37 1 5.6839 -4.0653 -2.5730 38 1 7.4674 -5.6623 -2.8840 39 1 8.2298 -6.3799 -1.4446 40 1 7.2490 -9.2899 -3.4781 41 1 7.8287 -2.9901 -3.0454 42 1 9.8056 -1.5237 -3.1133 43 1 11.3525 -1.4530 -1.1989 44 1 10.9183 -2.8428 0.7868 45 1 8.9363 -4.3021 0.8587 46 1 3.7887 -2.1514 1.2132 47 1 4.1916 -0.4559 0.8032 48 1 1.2557 0.5188 2.7058 49 1 2.6142 -0.4805 3.2749 50 1 2.9195 0.9150 2.2130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329720621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:01 Heat of formation + Delta-G solvation = -71.925811 kcal Electronic energy + Delta-G solvation = -30518.161047 eV Core-core repulsion = 26508.932720 eV Total energy + Delta-G solvation = -4009.228328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.97835 -40.65624 -39.63759 -38.94231 -36.98954 -34.86914 -34.32868 -32.62145 -32.25887 -31.71933 -30.60349 -28.43106 -27.34585 -26.92720 -24.91890 -23.84104 -23.36423 -22.68130 -21.40532 -21.14165 -20.90102 -18.98201 -18.57578 -18.14790 -17.65493 -17.41432 -16.81827 -16.64895 -16.37728 -16.07813 -15.62450 -15.22066 -15.02685 -14.97552 -14.73928 -14.52651 -14.27565 -14.21454 -14.10971 -13.78882 -13.72884 -13.65275 -13.49433 -13.13174 -12.96800 -12.83645 -12.67770 -12.59440 -12.48046 -12.43197 -12.19370 -11.90711 -11.76751 -11.67655 -11.65078 -11.40301 -11.29494 -10.66969 -10.53765 -10.22294 -9.88614 -9.77943 -9.56552 -8.23343 -6.33807 0.31607 0.46681 0.53740 1.24571 1.37589 1.39009 1.46919 2.10673 2.37378 2.46823 2.93654 3.10463 3.29769 3.48350 3.55896 3.79378 3.91649 3.99657 4.18672 4.19124 4.30513 4.30633 4.36176 4.50762 4.54682 4.59063 4.61987 4.68532 4.71180 4.75439 4.76241 4.84711 4.98607 5.01232 5.08266 5.11208 5.15139 5.18377 5.20036 5.23229 5.37137 5.43340 5.48796 5.50812 5.58982 5.62444 5.73476 5.77894 6.01081 6.11544 6.16623 6.24928 6.63418 6.77808 6.93940 7.35016 8.87236 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007775 B = 0.003813 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3600.400203 B = 7341.252749 C = 9847.309793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.103 0.897 4 C 0.100 3.900 5 N -0.589 5.589 6 C 0.517 3.483 7 O -0.548 6.548 8 C 0.505 3.495 9 O -0.537 6.537 10 N -0.668 5.668 11 C 0.199 3.801 12 H 0.075 0.925 13 C 0.037 3.963 14 C -0.535 4.535 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.954 3.046 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.269 1.269 22 C -0.100 4.100 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.125 4.125 28 C 0.097 3.903 29 C -0.098 4.098 30 H 0.083 0.917 31 C -0.134 4.134 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.411 0.589 38 H 0.008 0.992 39 H 0.014 0.986 40 H 0.265 0.735 41 H 0.110 0.890 42 H 0.143 0.857 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.121 0.879 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 20.967 8.589 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 H 0.121 0.879 4 C -0.021 4.021 5 N -0.322 5.322 6 C 0.300 3.700 7 O -0.427 6.427 8 C 0.286 3.714 9 O -0.416 6.416 10 N -0.318 5.318 11 C 0.095 3.905 12 H 0.093 0.907 13 C 0.000 4.000 14 C -0.573 4.573 15 H 0.071 0.929 16 C -0.186 4.186 17 N -0.564 5.564 18 Si 0.779 3.221 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.194 1.194 22 C -0.101 4.101 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.025 4.025 29 C -0.117 4.117 30 H 0.101 0.899 31 C -0.192 4.192 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.247 0.753 38 H 0.026 0.974 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.161 0.839 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.139 0.861 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.077 0.923 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.369 20.785 8.639 23.393 hybrid contribution -0.585 -1.453 -0.829 1.772 sum -6.954 19.332 7.810 21.979 Atomic orbital electron populations 1.21745 0.92110 1.02348 1.03327 1.22322 0.97522 0.99306 0.91560 0.87879 1.22424 0.86345 0.94643 0.98710 1.48355 1.29190 1.41805 1.12815 1.19862 0.83906 0.80424 0.85817 1.90735 1.71018 1.64069 1.16870 1.20099 0.83801 0.80929 0.86581 1.90643 1.70614 1.64277 1.16019 1.45791 1.28861 1.42230 1.14900 1.19963 0.81842 0.90574 0.98076 0.90724 1.19142 0.96346 0.90036 0.94475 1.21372 1.03632 1.01352 1.30937 0.92947 1.25762 0.98458 0.99714 0.94713 1.70055 1.30942 1.22433 1.32926 0.85664 0.79653 0.78233 0.78507 1.19823 1.20506 1.19446 1.20337 0.96852 0.97552 0.95374 1.21054 0.98680 0.97365 0.97311 1.21406 0.94255 0.98827 0.99841 1.21489 1.00000 0.99632 0.93169 1.21425 0.96864 0.96038 0.99471 1.21183 0.95534 0.99765 0.97867 1.22834 0.98828 1.02109 0.78693 1.22475 0.94088 0.99224 0.95917 0.89897 1.21659 1.03160 0.98845 0.95502 0.92951 0.90281 0.91498 0.90815 0.91351 0.75332 0.97360 0.96772 0.92611 0.87186 0.83942 0.82930 0.83342 0.86099 0.90064 0.90480 0.90309 0.92265 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.13 71.98 0.66 -0.77 16 2 C -0.09 -1.22 3.02 -9.60 -0.03 -1.25 16 3 H 0.10 1.15 8.04 -2.39 -0.02 1.13 16 4 C 0.10 2.14 6.46 86.73 0.56 2.70 16 5 N -0.59 -16.66 3.33 -813.82 -2.71 -19.37 16 6 C 0.52 18.61 7.91 87.27 0.69 19.30 16 7 O -0.55 -22.07 16.80 -3.23 -0.05 -22.12 16 8 C 0.51 19.69 7.81 87.27 0.68 20.37 16 9 O -0.54 -21.49 13.44 -3.22 -0.04 -21.54 16 10 N -0.67 -27.46 4.03 -447.45 -1.81 -29.27 16 11 C 0.20 8.63 2.12 44.24 0.09 8.72 16 12 H 0.07 3.42 7.43 -2.38 -0.02 3.40 16 13 C 0.04 1.92 4.49 29.84 0.13 2.05 16 14 C -0.54 -29.90 8.84 25.60 0.23 -29.67 16 15 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 16 C 0.01 0.71 5.46 84.65 0.46 1.18 16 17 N -0.92 -55.04 13.29 21.45 0.28 -54.76 16 18 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 C -0.10 -3.83 4.91 -19.87 -0.10 -3.93 16 23 C -0.13 -4.41 9.32 22.27 0.21 -4.20 16 24 C -0.13 -3.55 10.05 22.27 0.22 -3.32 16 25 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 26 C -0.12 -3.27 10.05 22.27 0.22 -3.04 16 27 C -0.12 -4.25 9.67 22.27 0.22 -4.04 16 28 C 0.10 2.30 5.53 86.78 0.48 2.78 16 29 C -0.10 -1.56 3.07 -9.48 -0.03 -1.58 16 30 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 31 C -0.13 -1.51 9.31 71.98 0.67 -0.84 16 32 H 0.05 0.63 8.13 -2.39 -0.02 0.62 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.54 7.83 -2.39 -0.02 1.52 16 37 H 0.41 17.16 8.07 -92.71 -0.75 16.41 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 41 H 0.11 3.89 7.73 -2.91 -0.02 3.87 16 42 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 43 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 45 H 0.12 3.97 8.04 -2.91 -0.02 3.95 16 46 H 0.08 2.32 6.16 -2.39 -0.01 2.31 16 47 H 0.08 1.74 7.98 -2.38 -0.02 1.73 16 48 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.06 0.67 8.07 -2.39 -0.02 0.65 16 Total: -1.00 -69.65 411.69 3.47 -66.18 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.18 Total: 32.62 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.59 Total: 1.55 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -4.23 Total: -103.39 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -0.10 Total: -43.66 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.65 3.47 -66.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329720621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.747 kcal (2) G-P(sol) polarization free energy of solvation -69.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds