Wall clock time and date at job start Wed Apr 1 2020 02:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.19604 * 2 1 4 4 C 1.52791 * 109.19988 * 119.34105 * 2 1 3 5 5 N 1.47230 * 107.90262 * 167.84764 * 4 2 1 6 6 C 1.34780 * 121.33795 * 115.77072 * 5 4 2 7 7 O 1.21346 * 119.99811 * 359.09704 * 6 5 4 8 8 C 1.49447 * 119.99755 * 179.10786 * 6 5 4 9 9 O 1.21349 * 120.00631 * 354.51634 * 8 6 5 10 10 N 1.34779 * 120.00157 * 174.51844 * 8 6 5 11 11 C 1.46493 * 120.00572 * 179.72013 * 10 8 6 12 12 C 1.52996 * 109.47423 * 180.27145 * 11 10 8 13 13 C 1.52998 * 109.47486 * 300.00632 * 12 11 10 14 14 C 1.53007 * 109.47090 * 60.00470 * 12 11 10 15 15 C 1.50704 * 109.47554 * 180.02562 * 12 11 10 16 16 H 1.08004 * 119.99427 * 359.69279 * 15 12 11 17 17 C 1.37867 * 120.00253 * 179.68728 * 15 12 11 18 18 N 1.31516 * 119.99920 * 197.31962 * 17 15 12 19 19 Si 1.86803 * 120.00168 * 17.31947 * 17 15 12 20 20 H 1.48504 * 109.46979 * 82.76575 * 19 17 15 21 21 H 1.48501 * 109.46888 * 202.76431 * 19 17 15 22 22 H 1.48498 * 109.46944 * 322.76666 * 19 17 15 23 23 C 1.46684 * 117.32342 * 296.03225 * 5 4 2 24 24 C 1.50400 * 109.90401 * 44.04074 * 23 5 4 25 25 C 1.38836 * 117.83006 * 169.31558 * 24 23 5 26 26 C 1.37960 * 120.50754 * 179.04839 * 25 24 23 27 27 C 1.38267 * 119.71651 * 0.03340 * 26 25 24 28 28 C 1.37913 * 119.82707 * 0.23305 * 27 26 25 29 29 C 1.37676 * 122.32327 * 348.81609 * 24 23 5 30 30 H 1.09002 * 109.47271 * 300.65912 * 1 2 3 31 31 H 1.09004 * 109.47194 * 60.65936 * 1 2 3 32 32 H 1.09001 * 109.47664 * 180.66061 * 1 2 3 33 33 H 1.09002 * 109.77315 * 48.24231 * 4 2 1 34 34 H 1.09004 * 109.81901 * 287.47458 * 4 2 1 35 35 H 0.97010 * 119.99600 * 359.97438 * 10 8 6 36 36 H 1.08995 * 109.47216 * 300.27790 * 11 10 8 37 37 H 1.09003 * 109.46872 * 60.27840 * 11 10 8 38 38 H 1.08995 * 109.47203 * 68.15790 * 13 12 11 39 39 H 1.09000 * 109.47073 * 188.15883 * 13 12 11 40 40 H 1.09004 * 109.46747 * 308.15242 * 13 12 11 41 41 H 1.09002 * 109.47003 * 59.99331 * 14 12 11 42 42 H 1.08998 * 109.47302 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.46528 * 299.99903 * 14 12 11 44 44 H 0.97001 * 119.99800 * 180.02562 * 18 17 15 45 45 H 1.09011 * 109.43487 * 164.18920 * 23 5 4 46 46 H 1.09001 * 109.43939 * 284.05985 * 23 5 4 47 47 H 1.08003 * 119.74275 * 359.04447 * 25 24 23 48 48 H 1.08001 * 120.14269 * 180.02562 * 26 25 24 49 49 H 1.07999 * 120.08614 * 180.20704 * 27 26 25 50 50 H 1.07995 * 119.70491 * 179.90192 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8884 1.0294 0.0000 4 6 2.0324 -0.7070 1.2578 5 7 3.4747 -0.9529 1.0932 6 6 4.3821 -0.3677 1.9000 7 8 4.0171 0.3918 2.7732 8 6 5.8376 -0.6540 1.7189 9 8 6.1965 -1.4874 0.9132 10 7 6.7519 0.0134 2.4505 11 6 8.1784 -0.2715 2.2774 12 6 8.9934 0.6113 3.2245 13 6 8.7252 2.0837 2.9068 14 6 8.5869 0.3193 4.6704 15 6 10.4610 0.3186 3.0460 16 1 10.7800 -0.4265 2.3322 17 6 11.3962 1.0021 3.7937 18 7 12.6572 1.0112 3.4206 19 14 10.8721 1.9152 5.3368 20 1 10.7982 0.9632 6.4742 21 1 11.8633 2.9775 5.6440 22 1 9.5383 2.5305 5.1189 23 6 3.8848 -1.8556 0.0123 24 6 3.1139 -1.5387 -1.2397 25 6 3.5260 -2.1360 -2.4233 26 6 2.8468 -1.8995 -3.6006 27 6 1.7479 -1.0605 -3.6012 28 6 1.3410 -0.4621 -2.4271 29 6 2.0253 -0.6959 -1.2403 30 1 -0.3634 0.5240 0.8840 31 1 -0.3634 0.5036 -0.8959 32 1 -0.3634 -1.0276 0.0118 33 1 1.5086 -1.6548 1.3823 34 1 1.8632 -0.0750 2.1296 35 1 6.4651 0.6799 3.0943 36 1 8.3694 -1.3205 2.5037 37 1 8.4681 -0.0634 1.2474 38 1 7.6979 2.3316 3.1733 39 1 9.4101 2.7095 3.4791 40 1 8.8768 2.2590 1.8417 41 1 8.7779 -0.7297 4.8967 42 1 9.1679 0.9479 5.3452 43 1 7.5255 0.5314 4.7992 44 1 13.3153 1.4918 3.9468 45 1 4.9511 -1.7325 -0.1782 46 1 3.6861 -2.8865 0.3055 47 1 4.3849 -2.7909 -2.4222 48 1 3.1723 -2.3677 -4.5179 49 1 1.2098 -0.8737 -4.5188 50 1 0.4833 0.1941 -2.4302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330328626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:15 Heat of formation + Delta-G solvation = -35.350857 kcal Electronic energy + Delta-G solvation = -30535.026602 eV Core-core repulsion = 26527.384283 eV Total energy + Delta-G solvation = -4007.642319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.22442 -40.85449 -39.68395 -38.53742 -37.40608 -35.55713 -34.88918 -33.45713 -32.42796 -30.79585 -28.80576 -28.05604 -27.85589 -27.22258 -26.81403 -24.51475 -23.91238 -22.48576 -21.71276 -21.09290 -20.38152 -18.89256 -18.24360 -18.08485 -17.55929 -17.37020 -17.03429 -16.59531 -16.51621 -16.31573 -15.68700 -15.53429 -15.27961 -14.90546 -14.85311 -14.71897 -14.58653 -14.40698 -14.28034 -14.05951 -13.79294 -13.74621 -13.38776 -13.30623 -13.00011 -12.87316 -12.64822 -12.41135 -12.37952 -12.26532 -12.19298 -12.01035 -11.86105 -11.79073 -11.55027 -11.12847 -10.59931 -10.52464 -10.40365 -10.23717 -10.02926 -9.61094 -9.44452 -8.31866 -6.30916 0.25560 0.41802 0.46258 1.19494 1.36383 1.38522 1.49569 2.04275 2.34033 2.38087 2.81461 3.03824 3.23458 3.58968 3.70245 3.76313 4.01023 4.06397 4.14795 4.25484 4.28862 4.34215 4.37559 4.42106 4.51067 4.56607 4.64967 4.65706 4.69671 4.76272 4.79819 4.82591 4.89898 4.94397 5.02827 5.03818 5.06659 5.10080 5.17365 5.19332 5.36114 5.36597 5.47365 5.57360 5.59280 5.63907 5.67353 5.75541 5.92583 6.10673 6.17125 6.29544 6.61133 6.72694 6.88957 7.33274 8.84771 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020121 B = 0.002468 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.268136 B =11343.919430 C =12148.152921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 H 0.076 0.924 4 C 0.109 3.891 5 N -0.578 5.578 6 C 0.515 3.485 7 O -0.539 6.539 8 C 0.501 3.499 9 O -0.533 6.533 10 N -0.679 5.679 11 C 0.153 3.847 12 C 0.028 3.972 13 C -0.143 4.143 14 C -0.152 4.152 15 C -0.517 4.517 16 H 0.037 0.963 17 C 0.024 3.976 18 N -0.939 5.939 19 Si 0.937 3.063 20 H -0.281 1.281 21 H -0.315 1.315 22 H -0.212 1.212 23 C 0.110 3.890 24 C -0.107 4.107 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.123 4.123 29 C -0.085 4.085 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.415 0.585 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.036 0.964 43 H 0.065 0.935 44 H 0.265 0.735 45 H 0.138 0.862 46 H 0.091 0.909 47 H 0.130 0.870 48 H 0.142 0.858 49 H 0.145 0.855 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.972 -3.420 -9.732 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 H 0.094 0.906 4 C -0.012 4.012 5 N -0.310 5.310 6 C 0.298 3.702 7 O -0.416 6.416 8 C 0.283 3.717 9 O -0.413 6.413 10 N -0.331 5.331 11 C 0.030 3.970 12 C 0.027 3.973 13 C -0.201 4.201 14 C -0.208 4.208 15 C -0.555 4.555 16 H 0.055 0.945 17 C -0.174 4.174 18 N -0.578 5.578 19 Si 0.766 3.234 20 H -0.208 1.208 21 H -0.244 1.244 22 H -0.136 1.136 23 C -0.011 4.011 24 C -0.108 4.108 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.141 4.141 29 C -0.086 4.086 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.254 0.746 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.154 0.846 46 H 0.109 0.891 47 H 0.148 0.852 48 H 0.159 0.841 49 H 0.162 0.838 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -28.721 -3.547 -9.783 30.548 hybrid contribution 0.828 0.413 0.876 1.274 sum -27.894 -3.134 -8.907 29.448 Atomic orbital electron populations 1.21840 0.91122 1.03114 1.03456 1.20337 0.98146 0.98751 0.91047 0.90630 1.22034 0.77782 1.02366 0.99007 1.47940 1.07190 1.44918 1.30916 1.19941 0.86844 0.81045 0.82403 1.90733 1.81006 1.35940 1.33939 1.20248 0.87407 0.82259 0.81835 1.90465 1.81179 1.34308 1.35360 1.46009 1.06834 1.40189 1.40072 1.21336 0.76669 0.99395 0.99616 1.18662 0.93372 0.92970 0.92332 1.22233 0.99942 0.96977 1.00923 1.22351 1.00026 1.01224 0.97242 1.20935 0.89978 1.22044 1.22539 0.94493 1.25734 0.94546 0.96552 1.00590 1.70118 1.03785 1.44287 1.39611 0.86444 0.78804 0.78153 0.79952 1.20786 1.24398 1.13639 1.21588 1.03224 0.93206 0.83119 1.19872 0.96534 0.99069 0.95344 1.21228 1.00587 1.00407 0.92164 1.21376 0.95937 0.98771 0.98234 1.21429 0.97086 0.96977 0.98831 1.21483 1.00421 1.00382 0.91781 1.19666 0.95182 0.97743 0.95966 0.90978 0.90676 0.91651 0.88574 0.88378 0.74631 0.92007 0.92313 0.92400 0.93552 0.93630 0.92845 0.94550 0.91626 0.92611 0.84575 0.89129 0.85241 0.84065 0.83764 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.65 71.98 0.62 -0.73 16 2 C -0.06 -1.01 2.98 -11.64 -0.03 -1.05 16 3 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 4 C 0.11 1.96 5.73 86.17 0.49 2.46 16 5 N -0.58 -13.67 2.94 -826.33 -2.43 -16.10 16 6 C 0.52 14.71 7.79 87.27 0.68 15.39 16 7 O -0.54 -16.74 15.98 -3.24 -0.05 -16.80 16 8 C 0.50 15.83 7.80 87.27 0.68 16.51 16 9 O -0.53 -18.22 13.11 -3.24 -0.04 -18.26 16 10 N -0.68 -21.91 4.99 -464.43 -2.32 -24.23 16 11 C 0.15 5.82 4.50 86.38 0.39 6.21 16 12 C 0.03 1.17 0.50 -52.93 -0.03 1.14 16 13 C -0.14 -5.59 7.58 71.98 0.55 -5.04 16 14 C -0.15 -5.80 7.53 71.98 0.54 -5.25 16 15 C -0.52 -27.81 8.61 25.60 0.22 -27.59 16 16 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 17 C 0.02 1.35 5.28 84.65 0.45 1.80 16 18 N -0.94 -57.37 13.96 21.44 0.30 -57.07 16 19 Si 0.94 42.86 22.88 68.60 1.57 44.43 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 22 H -0.21 -8.44 4.71 99.48 0.47 -7.97 16 23 C 0.11 2.48 5.74 85.50 0.49 2.97 16 24 C -0.11 -2.23 5.81 -19.95 -0.12 -2.35 16 25 C -0.13 -2.37 9.62 22.35 0.21 -2.16 16 26 C -0.13 -1.96 10.05 22.21 0.22 -1.74 16 27 C -0.13 -1.77 10.04 22.20 0.22 -1.54 16 28 C -0.12 -1.84 9.03 22.37 0.20 -1.64 16 29 C -0.09 -1.56 5.48 -19.85 -0.11 -1.67 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.59 6.26 -2.38 -0.01 0.57 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 1.40 8.10 -2.39 -0.02 1.38 16 34 H 0.10 1.84 7.08 -2.38 -0.02 1.83 16 35 H 0.42 12.44 5.72 -92.70 -0.53 11.91 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.06 1.86 7.10 -2.39 -0.02 1.85 16 39 H 0.05 1.90 4.33 -2.39 -0.01 1.89 16 40 H 0.04 1.78 8.13 -2.38 -0.02 1.76 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.04 1.45 2.26 -2.39 -0.01 1.45 16 43 H 0.06 2.07 6.86 -2.39 -0.02 2.05 16 44 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.14 3.71 4.38 -46.70 -0.20 3.50 16 46 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.13 2.23 8.05 -2.91 -0.02 2.21 16 48 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 49 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 50 H 0.14 1.48 6.17 -2.91 -0.02 1.46 16 Total: -1.00 -66.47 379.34 2.72 -63.75 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.01 Total: 28.54 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 5.69 Total: -4.26 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -4.45 Total: -97.40 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.09 Total: -35.06 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.57 Total: 44.43 kcal Total: -66.47 2.72 -63.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330328626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.399 kcal (2) G-P(sol) polarization free energy of solvation -66.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds