Wall clock time and date at job start Wed Apr 1 2020 03:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.08997 * 109.86447 * 358.98795 * 3 2 1 5 5 O 1.43742 * 109.87639 * 237.83232 * 3 2 1 6 6 C 1.44377 * 106.97474 * 214.06136 * 5 3 2 7 7 C 1.54993 * 103.49369 * 40.05642 * 6 5 3 8 8 C 1.54099 * 109.88270 * 119.99934 * 3 2 1 9 9 H 1.09003 * 110.48657 * 2.77553 * 8 3 2 10 10 C 1.50697 * 110.48594 * 240.13055 * 8 3 2 11 11 O 1.21287 * 120.00016 * 0.02562 * 10 8 3 12 12 N 1.34773 * 120.00021 * 179.97438 * 10 8 3 13 13 C 1.46502 * 120.00056 * 180.02562 * 12 10 8 14 14 C 1.50702 * 109.47245 * 179.97438 * 13 12 10 15 15 C 1.38234 * 119.99903 * 269.72853 * 14 13 12 16 16 C 1.38238 * 120.00063 * 179.76628 * 15 14 13 17 17 C 1.38242 * 119.99448 * 0.48006 * 16 15 14 18 18 C 1.50703 * 119.99540 * 179.77204 * 17 16 15 19 19 H 1.08996 * 109.46990 * 160.02192 * 18 17 16 20 20 C 1.53003 * 109.46987 * 280.02257 * 18 17 16 21 21 N 1.46500 * 109.47393 * 40.02001 * 18 17 16 22 22 C 1.36937 * 120.00003 * 154.99881 * 21 18 17 23 23 H 1.08001 * 119.99728 * 0.02562 * 22 21 18 24 24 C 1.38810 * 120.00221 * 180.02562 * 22 21 18 25 25 N 1.31625 * 119.99661 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00365 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47353 * 59.99486 * 26 24 22 28 28 H 1.48498 * 109.47372 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.46965 * 299.99837 * 26 24 22 30 30 C 1.38231 * 119.99996 * 359.79178 * 17 16 15 31 31 C 1.38228 * 120.00547 * 359.95962 * 30 17 16 32 32 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 33 33 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 34 34 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 35 35 H 1.09004 * 110.61548 * 281.55804 * 6 5 3 36 36 H 1.08996 * 110.75545 * 158.63051 * 6 5 3 37 37 H 1.08993 * 110.91042 * 204.78269 * 7 6 5 38 38 H 1.09005 * 110.90237 * 81.17437 * 7 6 5 39 39 H 0.96999 * 119.99927 * 359.97438 * 12 10 8 40 40 H 1.09005 * 109.46986 * 299.99558 * 13 12 10 41 41 H 1.09000 * 109.47342 * 59.99873 * 13 12 10 42 42 H 1.08001 * 120.00271 * 359.97438 * 15 14 13 43 43 H 1.07997 * 120.00281 * 180.25039 * 16 15 14 44 44 H 1.08999 * 109.46926 * 180.02562 * 20 18 17 45 45 H 1.09008 * 109.46765 * 299.99908 * 20 18 17 46 46 H 1.08996 * 109.47309 * 60.00131 * 20 18 17 47 47 H 0.97003 * 119.99676 * 335.00331 * 21 18 17 48 48 H 0.97003 * 119.99837 * 179.97438 * 25 24 22 49 49 H 1.08005 * 119.99560 * 179.97438 * 30 17 16 50 50 H 1.08000 * 119.99955 * 180.02562 * 31 30 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3611 2.1384 -0.0181 5 8 2.9312 1.3685 -1.1443 6 6 4.1112 2.0949 -0.7388 7 6 4.3853 1.5692 0.6932 8 6 2.9531 1.3967 1.2550 9 1 2.8810 0.4806 1.8414 10 6 2.5665 2.5904 2.0895 11 8 1.6627 3.3148 1.7297 12 7 3.2244 2.8526 3.2362 13 6 2.8482 4.0128 4.0478 14 6 3.7303 4.0797 5.2678 15 6 3.3492 3.4394 6.4321 16 6 4.1606 3.4967 7.5499 17 6 5.3484 4.2027 7.5061 18 6 6.2305 4.2694 8.7262 19 1 7.2431 4.5408 8.4279 20 6 5.6843 5.3217 9.6934 21 7 6.2499 2.9621 9.3870 22 6 7.3159 2.6061 10.1693 23 1 8.1422 3.2893 10.2995 24 6 7.3345 1.3672 10.7951 25 7 6.3273 0.5348 10.6368 26 14 8.7883 0.8818 11.8628 27 1 8.9271 1.8501 12.9801 28 1 8.5659 -0.4795 12.4130 29 1 10.0277 0.8891 11.0447 30 6 5.7266 4.8476 6.3435 31 6 4.9178 4.7860 5.2243 32 1 -0.5401 -0.9353 0.0004 33 1 -0.5400 0.9354 0.0044 34 1 1.8500 -0.9353 0.0004 35 1 3.9153 3.1671 -0.7231 36 1 4.9494 1.8687 -1.3978 37 1 4.9459 2.3004 1.2754 38 1 4.9090 0.6136 0.6631 39 1 3.9464 2.2726 3.5245 40 1 2.9709 4.9225 3.4599 41 1 1.8074 3.9177 4.3572 42 1 2.4192 2.8915 6.4676 43 1 3.8649 2.9931 8.4583 44 1 6.3226 5.3703 10.5756 45 1 5.6700 6.2945 9.2017 46 1 4.6717 5.0503 9.9917 47 1 5.5076 2.3487 9.2703 48 1 6.3404 -0.3312 11.0737 49 1 6.6544 5.3995 6.3095 50 1 5.2136 5.2896 4.3159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484559870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:14 Heat of formation + Delta-G solvation = -29.222852 kcal Electronic energy + Delta-G solvation = -29082.245294 eV Core-core repulsion = 25074.868706 eV Total energy + Delta-G solvation = -4007.376588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.90725 -39.51933 -38.60224 -36.04408 -34.67054 -34.17718 -32.88935 -32.21798 -30.78059 -30.28396 -28.85080 -28.34875 -26.19690 -24.06750 -23.49101 -22.86475 -22.59282 -21.65861 -20.56801 -20.24533 -19.75566 -17.87521 -17.45192 -16.87875 -16.48527 -15.99190 -15.80663 -15.45714 -15.27216 -14.82250 -14.75513 -14.38095 -14.19819 -13.94374 -13.55443 -13.50071 -13.40917 -13.19169 -12.96656 -12.76265 -12.62333 -12.29693 -12.03589 -11.99757 -11.75626 -11.66702 -11.51820 -11.38235 -11.21046 -10.96846 -10.86673 -10.66809 -10.36882 -10.26581 -10.06040 -10.02526 -9.74514 -9.70756 -9.33310 -9.02332 -8.70864 -8.38522 -7.05255 -5.83635 -3.12584 1.39543 1.62127 1.83509 2.31069 2.95793 3.39418 3.44132 3.44889 3.66571 4.00214 4.04913 4.25703 4.39876 4.53510 4.57388 4.65335 4.79401 4.87666 4.90902 4.92454 5.08754 5.14574 5.24454 5.31871 5.33421 5.37587 5.46884 5.49735 5.50827 5.55698 5.66257 5.68427 5.72463 5.90199 5.96716 6.13728 6.19048 6.24447 6.25872 6.29751 6.37602 6.44959 6.53506 6.56566 6.65718 6.71177 6.90126 7.10351 7.19905 7.23932 7.63230 7.91001 8.34684 9.46033 10.01189 10.36471 11.38895 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.002015 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.566001 B =13895.702963 C =14719.281902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.159 4.159 3 C 0.113 3.887 4 H 0.098 0.902 5 O -0.367 6.367 6 C 0.046 3.954 7 C -0.146 4.146 8 C -0.141 4.141 9 H 0.116 0.884 10 C 0.522 3.478 11 O -0.539 6.539 12 N -0.720 5.720 13 C 0.167 3.833 14 C -0.132 4.132 15 C -0.099 4.099 16 C -0.105 4.105 17 C -0.052 4.052 18 C 0.203 3.797 19 H 0.056 0.944 20 C -0.160 4.160 21 N -0.721 5.721 22 C -0.241 4.241 23 H 0.071 0.929 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.121 4.121 31 C -0.102 4.102 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.405 0.595 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.057 0.943 45 H 0.038 0.962 46 H 0.048 0.952 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.121 0.879 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 4.043 -20.466 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.056 3.944 4 H 0.116 0.884 5 O -0.286 6.286 6 C -0.031 4.031 7 C -0.184 4.184 8 C -0.163 4.163 9 H 0.134 0.866 10 C 0.308 3.692 11 O -0.416 6.416 12 N -0.371 5.371 13 C 0.044 3.956 14 C -0.132 4.132 15 C -0.117 4.117 16 C -0.124 4.124 17 C -0.053 4.053 18 C 0.094 3.906 19 H 0.074 0.926 20 C -0.220 4.220 21 N -0.363 5.363 22 C -0.372 4.372 23 H 0.089 0.911 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.739 3.261 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 C -0.140 4.140 31 C -0.121 4.121 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.240 0.760 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.220 0.780 48 H 0.066 0.934 49 H 0.139 0.861 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.862 4.453 -20.815 22.691 hybrid contribution 1.006 -0.822 1.159 1.741 sum -6.856 3.631 -19.656 21.132 Atomic orbital electron populations 1.23963 0.95779 1.02412 0.98212 1.22849 0.95901 0.97442 1.01561 1.21873 0.92056 0.97173 0.83335 0.88423 1.88921 1.30284 1.76246 1.33146 1.23570 0.88464 0.96374 0.94671 1.23191 0.94596 1.03541 0.97038 1.22696 0.97077 0.98592 0.97919 0.86641 1.20282 0.81883 0.85970 0.81115 1.90689 1.30230 1.49880 1.70836 1.46141 1.37989 1.30055 1.22945 1.20163 0.97790 0.88477 0.89146 1.19634 0.96667 1.02100 0.94846 1.21020 0.99555 0.98585 0.92563 1.21096 0.94102 0.98455 0.98705 1.20545 0.94790 0.94191 0.95811 1.19257 0.95162 0.88153 0.88064 0.92609 1.22425 1.01413 0.97729 1.00434 1.42511 1.23492 1.13678 1.56667 1.19194 0.97673 0.99223 1.21088 0.91119 1.24741 0.98129 0.96840 1.01107 1.69648 1.31271 1.09204 1.47942 0.86259 0.82039 0.77465 0.80361 1.21226 1.21673 1.21242 1.21018 0.99851 1.00518 0.92601 1.20913 0.93976 0.99025 0.98163 0.87775 0.88105 0.86751 0.91924 0.88415 0.89421 0.89013 0.76016 0.90833 0.90760 0.86338 0.85351 0.92358 0.94309 0.93305 0.78008 0.93393 0.86103 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 14.32 29.02 0.42 -0.94 16 2 C -0.16 -1.41 8.94 -36.02 -0.32 -1.73 16 3 C 0.11 1.14 3.41 -27.31 -0.09 1.04 16 4 H 0.10 1.16 6.10 -51.93 -0.32 0.85 16 5 O -0.37 -3.93 11.17 -35.23 -0.39 -4.32 16 6 C 0.05 0.36 7.72 38.21 0.29 0.66 16 7 C -0.15 -1.01 6.70 -24.73 -0.17 -1.17 16 8 C -0.14 -1.21 3.06 -90.25 -0.28 -1.48 16 9 H 0.12 0.84 7.69 -51.93 -0.40 0.44 16 10 C 0.52 5.58 7.05 -10.99 -0.08 5.50 16 11 O -0.54 -7.59 15.25 5.55 0.08 -7.50 16 12 N -0.72 -6.89 5.40 -61.47 -0.33 -7.22 16 13 C 0.17 1.75 5.80 -5.19 -0.03 1.72 16 14 C -0.13 -1.55 5.25 -104.62 -0.55 -2.10 16 15 C -0.10 -1.31 9.70 -39.58 -0.38 -1.70 16 16 C -0.11 -1.68 9.06 -39.58 -0.36 -2.04 16 17 C -0.05 -0.86 4.95 -104.62 -0.52 -1.38 16 18 C 0.20 3.89 3.09 -69.08 -0.21 3.68 16 19 H 0.06 1.08 7.94 -51.93 -0.41 0.66 16 20 C -0.16 -2.80 9.47 37.16 0.35 -2.45 16 21 N -0.72 -17.35 5.07 -54.55 -0.28 -17.63 16 22 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 26 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 C -0.12 -1.68 9.67 -39.59 -0.38 -2.06 16 31 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 32 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.10 0.84 7.85 -52.48 -0.41 0.43 16 34 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.55 7.74 -51.93 -0.40 0.15 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.40 3.39 8.46 -40.82 -0.35 3.04 16 40 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 41 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.13 2.23 6.92 -52.49 -0.36 1.87 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.38 9.74 6.07 -40.82 -0.25 9.50 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.12 1.49 8.04 -52.48 -0.42 1.07 16 50 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 414.34 15.07 6.24 6.24 Total: -1.00 -31.77 414.34 -9.84 -41.61 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -7.93 Total: 11.73 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -2.94 Total: -13.10 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.12 Total: -51.49 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.31 Total: -11.82 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.77 -9.84 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484559870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.389 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds