Wall clock time and date at job start Wed Apr 1 2020 03:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.08997 * 109.86447 * 358.98795 * 3 2 1 5 5 O 1.43742 * 109.87639 * 237.83232 * 3 2 1 6 6 C 1.44377 * 106.97474 * 214.06136 * 5 3 2 7 7 C 1.54993 * 103.49369 * 40.05642 * 6 5 3 8 8 C 1.54099 * 109.88270 * 119.99934 * 3 2 1 9 9 H 1.09003 * 110.48657 * 2.77553 * 8 3 2 10 10 C 1.50697 * 110.48594 * 240.13055 * 8 3 2 11 11 O 1.21287 * 120.00016 * 0.02562 * 10 8 3 12 12 N 1.34773 * 120.00021 * 179.97438 * 10 8 3 13 13 C 1.46502 * 120.00056 * 180.02562 * 12 10 8 14 14 C 1.50702 * 109.47245 * 179.97438 * 13 12 10 15 15 C 1.38234 * 119.99903 * 269.72853 * 14 13 12 16 16 C 1.38238 * 120.00063 * 179.76628 * 15 14 13 17 17 C 1.38242 * 119.99448 * 0.48006 * 16 15 14 18 18 C 1.50703 * 119.99540 * 179.77204 * 17 16 15 19 19 H 1.08996 * 109.46990 * 160.02192 * 18 17 16 20 20 C 1.53003 * 109.46987 * 280.02257 * 18 17 16 21 21 N 1.46500 * 109.47393 * 40.02001 * 18 17 16 22 22 C 1.36937 * 120.00003 * 154.99881 * 21 18 17 23 23 H 1.08001 * 119.99728 * 0.02562 * 22 21 18 24 24 C 1.38810 * 120.00221 * 180.02562 * 22 21 18 25 25 N 1.31625 * 119.99661 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00365 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47353 * 59.99486 * 26 24 22 28 28 H 1.48498 * 109.47372 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.46965 * 299.99837 * 26 24 22 30 30 C 1.38231 * 119.99996 * 359.79178 * 17 16 15 31 31 C 1.38228 * 120.00547 * 359.95962 * 30 17 16 32 32 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 33 33 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 34 34 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 35 35 H 1.09004 * 110.61548 * 281.55804 * 6 5 3 36 36 H 1.08996 * 110.75545 * 158.63051 * 6 5 3 37 37 H 1.08993 * 110.91042 * 204.78269 * 7 6 5 38 38 H 1.09005 * 110.90237 * 81.17437 * 7 6 5 39 39 H 0.96999 * 119.99927 * 359.97438 * 12 10 8 40 40 H 1.09005 * 109.46986 * 299.99558 * 13 12 10 41 41 H 1.09000 * 109.47342 * 59.99873 * 13 12 10 42 42 H 1.08001 * 120.00271 * 359.97438 * 15 14 13 43 43 H 1.07997 * 120.00281 * 180.25039 * 16 15 14 44 44 H 1.08999 * 109.46926 * 180.02562 * 20 18 17 45 45 H 1.09008 * 109.46765 * 299.99908 * 20 18 17 46 46 H 1.08996 * 109.47309 * 60.00131 * 20 18 17 47 47 H 0.97003 * 119.99676 * 335.00331 * 21 18 17 48 48 H 0.97003 * 119.99837 * 179.97438 * 25 24 22 49 49 H 1.08005 * 119.99560 * 179.97438 * 30 17 16 50 50 H 1.08000 * 119.99955 * 180.02562 * 31 30 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3611 2.1384 -0.0181 5 8 2.9312 1.3685 -1.1443 6 6 4.1112 2.0949 -0.7388 7 6 4.3853 1.5692 0.6932 8 6 2.9531 1.3967 1.2550 9 1 2.8810 0.4806 1.8414 10 6 2.5665 2.5904 2.0895 11 8 1.6627 3.3148 1.7297 12 7 3.2244 2.8526 3.2362 13 6 2.8482 4.0128 4.0478 14 6 3.7303 4.0797 5.2678 15 6 3.3492 3.4394 6.4321 16 6 4.1606 3.4967 7.5499 17 6 5.3484 4.2027 7.5061 18 6 6.2305 4.2694 8.7262 19 1 7.2431 4.5408 8.4279 20 6 5.6843 5.3217 9.6934 21 7 6.2499 2.9621 9.3870 22 6 7.3159 2.6061 10.1693 23 1 8.1422 3.2893 10.2995 24 6 7.3345 1.3672 10.7951 25 7 6.3273 0.5348 10.6368 26 14 8.7883 0.8818 11.8628 27 1 8.9271 1.8501 12.9801 28 1 8.5659 -0.4795 12.4130 29 1 10.0277 0.8891 11.0447 30 6 5.7266 4.8476 6.3435 31 6 4.9178 4.7860 5.2243 32 1 -0.5401 -0.9353 0.0004 33 1 -0.5400 0.9354 0.0044 34 1 1.8500 -0.9353 0.0004 35 1 3.9153 3.1671 -0.7231 36 1 4.9494 1.8687 -1.3978 37 1 4.9459 2.3004 1.2754 38 1 4.9090 0.6136 0.6631 39 1 3.9464 2.2726 3.5245 40 1 2.9709 4.9225 3.4599 41 1 1.8074 3.9177 4.3572 42 1 2.4192 2.8915 6.4676 43 1 3.8649 2.9931 8.4583 44 1 6.3226 5.3703 10.5756 45 1 5.6700 6.2945 9.2017 46 1 4.6717 5.0503 9.9917 47 1 5.5076 2.3487 9.2703 48 1 6.3404 -0.3312 11.0737 49 1 6.6544 5.3995 6.3095 50 1 5.2136 5.2896 4.3159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484559870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:13 Heat of formation + Delta-G solvation = -48.533489 kcal Electronic energy + Delta-G solvation = -29083.082666 eV Core-core repulsion = 25074.868706 eV Total energy + Delta-G solvation = -4008.213961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.69075 -40.59191 -39.46281 -37.42980 -35.83049 -34.84964 -34.20175 -33.38349 -31.90495 -31.56487 -30.04753 -29.44501 -27.24869 -25.86329 -24.41134 -23.74943 -23.46428 -22.86398 -21.35395 -21.08741 -20.91346 -19.38758 -18.62188 -17.56437 -17.37687 -17.16386 -16.84297 -16.41736 -16.34343 -16.07134 -15.73470 -15.67683 -15.08537 -15.03444 -14.82972 -14.70615 -14.43576 -14.26414 -14.11656 -13.77137 -13.62515 -13.43459 -13.39476 -13.04527 -12.82107 -12.71028 -12.68338 -12.42689 -12.32746 -12.18628 -12.14899 -12.03172 -12.00712 -11.59879 -11.53985 -11.09824 -10.98473 -10.74021 -10.41939 -10.18801 -9.78826 -9.54127 -9.01943 -7.93564 -5.21820 0.30758 0.53658 1.18735 1.48028 1.49000 1.50370 1.56325 2.12027 2.56663 2.90584 3.03632 3.40358 3.40717 3.59928 3.63470 3.73067 3.87658 3.98891 4.01736 4.04405 4.09670 4.15760 4.24899 4.30627 4.35555 4.46408 4.54237 4.59802 4.68690 4.77194 4.77639 4.78441 4.79985 4.83850 5.00260 5.00888 5.02151 5.06778 5.12207 5.22451 5.31795 5.41945 5.50975 5.55888 5.59193 5.63345 5.74130 5.84588 5.85803 6.10103 6.28678 6.43776 7.10636 7.34998 8.09669 8.33802 9.29726 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.002015 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.566001 B =13895.702963 C =14719.281902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.170 4.170 3 C 0.111 3.889 4 H 0.072 0.928 5 O -0.386 6.386 6 C 0.038 3.962 7 C -0.138 4.138 8 C -0.137 4.137 9 H 0.132 0.868 10 C 0.523 3.477 11 O -0.576 6.576 12 N -0.711 5.711 13 C 0.171 3.829 14 C -0.115 4.115 15 C -0.099 4.099 16 C -0.124 4.124 17 C -0.073 4.073 18 C 0.199 3.801 19 H 0.055 0.945 20 C -0.150 4.150 21 N -0.734 5.734 22 C -0.239 4.239 23 H 0.077 0.923 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.971 3.029 27 H -0.279 1.279 28 H -0.297 1.297 29 H -0.277 1.277 30 C -0.121 4.121 31 C -0.091 4.091 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.054 0.946 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.413 0.587 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.042 0.958 45 H 0.069 0.931 46 H 0.039 0.961 47 H 0.374 0.626 48 H 0.250 0.750 49 H 0.138 0.862 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 4.587 -21.945 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.053 3.947 4 H 0.090 0.910 5 O -0.306 6.306 6 C -0.038 4.038 7 C -0.175 4.175 8 C -0.158 4.158 9 H 0.150 0.850 10 C 0.310 3.690 11 O -0.456 6.456 12 N -0.362 5.362 13 C 0.049 3.951 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.142 4.142 17 C -0.074 4.074 18 C 0.091 3.909 19 H 0.073 0.927 20 C -0.210 4.210 21 N -0.375 5.375 22 C -0.371 4.371 23 H 0.095 0.905 24 C -0.267 4.267 25 N -0.620 5.620 26 Si 0.800 3.200 27 H -0.206 1.206 28 H -0.224 1.224 29 H -0.204 1.204 30 C -0.139 4.139 31 C -0.110 4.110 32 H 0.141 0.859 33 H 0.110 0.890 34 H 0.146 0.854 35 H 0.073 0.927 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.250 0.750 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.148 0.852 43 H 0.121 0.879 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.208 0.792 48 H 0.059 0.941 49 H 0.156 0.844 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.736 5.044 -22.299 23.834 hybrid contribution 0.593 -0.871 1.503 1.835 sum -6.142 4.173 -20.796 22.082 Atomic orbital electron populations 1.24125 0.95794 1.02968 0.97482 1.22958 0.96187 0.97426 1.02257 1.21809 0.92039 0.96905 0.83956 0.91035 1.88900 1.31249 1.76562 1.33889 1.23762 0.88213 0.95839 0.95981 1.23217 0.93551 1.04708 0.96057 1.22696 0.97840 0.98115 0.97150 0.84996 1.20618 0.81175 0.86058 0.81143 1.90681 1.31914 1.51300 1.71739 1.46035 1.37929 1.29805 1.22447 1.20088 0.97258 0.89148 0.88650 1.19727 0.96580 1.00729 0.94534 1.21121 0.99608 0.98732 0.92249 1.20964 0.95006 0.99390 0.98859 1.20325 0.94921 0.96426 0.95774 1.19419 0.96010 0.86198 0.89300 0.92660 1.22270 1.00283 0.98774 0.99637 1.42708 1.22507 1.15361 1.56957 1.19591 0.98127 0.99036 1.20317 0.90541 1.25519 1.00776 0.97269 1.03184 1.69808 1.33264 1.09384 1.49562 0.85250 0.79286 0.76618 0.78843 1.20553 1.22381 1.20351 1.21195 1.00727 1.00038 0.91972 1.21213 0.93137 0.98074 0.98543 0.85867 0.88951 0.85359 0.92737 0.86443 0.88409 0.87249 0.75006 0.90099 0.91124 0.85161 0.87941 0.93905 0.91214 0.94177 0.79213 0.94099 0.84418 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 14.32 67.79 0.97 -1.61 16 2 C -0.17 -2.84 8.94 25.65 0.23 -2.61 16 3 C 0.11 2.16 3.41 30.22 0.10 2.26 16 4 H 0.07 1.76 6.10 -2.39 -0.01 1.75 16 5 O -0.39 -7.95 11.17 -148.98 -1.66 -9.62 16 6 C 0.04 0.55 7.72 72.66 0.56 1.11 16 7 C -0.14 -1.54 6.70 31.89 0.21 -1.33 16 8 C -0.14 -2.10 3.06 -10.55 -0.03 -2.13 16 9 H 0.13 1.60 7.69 -2.39 -0.02 1.58 16 10 C 0.52 10.40 7.05 87.66 0.62 11.02 16 11 O -0.58 -15.95 15.25 -3.05 -0.05 -16.00 16 12 N -0.71 -11.93 5.40 -466.77 -2.52 -14.45 16 13 C 0.17 3.17 5.80 85.63 0.50 3.67 16 14 C -0.12 -2.42 5.25 -19.86 -0.10 -2.52 16 15 C -0.10 -2.51 9.70 22.27 0.22 -2.29 16 16 C -0.12 -3.98 9.06 22.27 0.20 -3.78 16 17 C -0.07 -2.37 4.95 -19.86 -0.10 -2.47 16 18 C 0.20 7.59 3.09 44.25 0.14 7.72 16 19 H 0.06 2.09 7.94 -2.39 -0.02 2.07 16 20 C -0.15 -5.20 9.47 71.98 0.68 -4.51 16 21 N -0.73 -36.02 5.07 -326.50 -1.66 -37.68 16 22 C -0.24 -12.94 9.93 84.03 0.83 -12.10 16 23 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 24 C -0.08 -4.24 5.50 84.86 0.47 -3.78 16 25 N -0.97 -58.35 13.06 21.65 0.28 -58.06 16 26 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 29 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 30 C -0.12 -3.05 9.67 22.27 0.22 -2.83 16 31 C -0.09 -1.86 9.70 22.27 0.22 -1.65 16 32 H 0.12 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.09 1.56 7.85 -2.91 -0.02 1.54 16 34 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 0.91 7.74 -2.39 -0.02 0.89 16 38 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.41 5.71 8.46 -92.71 -0.78 4.93 16 40 H 0.08 1.45 8.09 -2.38 -0.02 1.43 16 41 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 42 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 43 H 0.10 3.78 6.92 -2.91 -0.02 3.76 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 46 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.37 19.70 6.07 -92.71 -0.56 19.14 16 48 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 49 H 0.14 2.97 8.04 -2.91 -0.02 2.94 16 50 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -70.06 414.34 1.94 -68.11 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -0.41 Total: 38.20 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 5.93 Total: -17.84 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -3.89 Total: -110.19 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -1.71 Total: -25.62 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -70.06 1.94 -68.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484559870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.577 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds