Wall clock time and date at job start Wed Apr 1 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.29408 * 2 1 4 4 C 1.54002 * 110.32420 * 122.13643 * 2 1 3 5 5 N 1.47490 * 107.08235 * 120.30091 * 4 2 1 6 6 C 1.34776 * 127.03477 * 154.28823 * 5 4 2 7 7 O 1.21551 * 120.00225 * 175.34957 * 6 5 4 8 8 C 1.47849 * 119.99891 * 355.35774 * 6 5 4 9 9 C 1.39467 * 120.01462 * 40.60083 * 8 6 5 10 10 C 1.37931 * 119.69490 * 179.97438 * 9 8 6 11 11 C 1.38208 * 120.06408 * 0.11340 * 10 9 8 12 12 C 1.38757 * 120.60914 * 0.02562 * 11 10 9 13 13 C 1.37674 * 119.85989 * 359.49752 * 12 11 10 14 14 C 1.50714 * 121.42091 * 180.82302 * 13 12 11 15 15 C 1.52973 * 109.76627 * 342.97153 * 14 13 12 16 16 O 1.43206 * 108.45348 * 49.22659 * 15 14 13 17 17 C 1.43011 * 112.85540 * 289.13511 * 16 15 14 18 18 C 1.48115 * 105.93296 * 334.55368 * 5 4 2 19 19 C 1.54624 * 110.41456 * 237.80930 * 2 1 3 20 20 H 1.08998 * 110.73938 * 144.57790 * 19 2 1 21 21 C 1.53003 * 110.74016 * 21.42988 * 19 2 1 22 22 N 1.46493 * 109.47200 * 175.00042 * 21 19 2 23 23 C 1.36932 * 120.00050 * 180.02562 * 22 21 19 24 24 H 1.07998 * 120.00162 * 359.97438 * 23 22 21 25 25 C 1.38813 * 119.99974 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00338 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99847 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47500 * 89.99957 * 27 25 23 29 29 H 1.48501 * 109.47073 * 209.99830 * 27 25 23 30 30 H 1.48500 * 109.47187 * 329.99608 * 27 25 23 31 31 H 1.08996 * 109.47471 * 299.32106 * 1 2 3 32 32 H 1.09005 * 109.47033 * 59.31963 * 1 2 3 33 33 H 1.08994 * 109.47110 * 179.31280 * 1 2 3 34 34 H 1.08998 * 109.91564 * 0.93989 * 4 2 1 35 35 H 1.08998 * 110.07535 * 239.74790 * 4 2 1 36 36 H 1.08001 * 120.15008 * 359.93067 * 9 8 6 37 37 H 1.08007 * 119.96689 * 180.08814 * 10 9 8 38 38 H 1.07998 * 119.69512 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.42265 * 103.06509 * 14 13 12 40 40 H 1.09000 * 109.42172 * 222.87770 * 14 13 12 41 41 H 1.09002 * 109.63598 * 168.91168 * 15 14 13 42 42 H 1.08997 * 109.63731 * 289.32526 * 15 14 13 43 43 H 1.09006 * 109.91876 * 291.70505 * 17 16 15 44 44 H 1.09000 * 108.85189 * 172.15209 * 17 16 15 45 45 H 1.08996 * 110.66240 * 157.73572 * 18 5 4 46 46 H 1.09004 * 110.66132 * 280.85187 * 18 5 4 47 47 H 1.08994 * 109.47029 * 295.00381 * 21 19 2 48 48 H 1.09005 * 109.46814 * 55.00164 * 21 19 2 49 49 H 0.97001 * 120.00159 * 0.02562 * 22 21 19 50 50 H 0.96999 * 120.00237 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8824 -1.8836 0.7102 6 6 3.8974 -2.5042 1.3436 7 8 4.4324 -3.4694 0.8339 8 6 4.3600 -2.0111 2.6584 9 6 3.4327 -1.5887 3.6107 10 6 3.8716 -1.1304 4.8354 11 6 5.2245 -1.0885 5.1148 12 6 6.1538 -1.5042 4.1719 13 6 5.7275 -1.9729 2.9496 14 6 6.7052 -2.4504 1.9067 15 6 8.1083 -1.9412 2.2414 16 8 8.3810 -2.2345 3.6163 17 6 7.6182 -1.4282 4.5182 18 6 2.3641 -2.1779 -0.6457 19 6 2.0694 -0.7720 -1.2264 20 1 2.9825 -0.3104 -1.6020 21 6 1.0101 -0.8476 -2.3278 22 7 1.5871 -1.4776 -3.5179 23 6 0.8209 -1.6534 -4.6391 24 1 -0.2088 -1.3280 -4.6460 25 6 1.3676 -2.2508 -5.7666 26 7 2.6224 -2.6478 -5.7581 27 14 0.3222 -2.4912 -7.2959 28 1 0.4457 -1.2989 -8.1725 29 1 0.7880 -3.6954 -8.0295 30 1 -1.0982 -2.6706 -6.9014 31 1 -0.3634 0.5032 0.8960 32 1 -0.3633 0.5244 -0.8839 33 1 -0.3633 -1.0275 -0.0123 34 1 1.2330 -1.1569 1.8101 35 1 2.6785 -0.1107 1.8387 36 1 2.3760 -1.6196 3.3899 37 1 3.1572 -0.8035 5.5766 38 1 5.5615 -0.7290 6.0758 39 1 6.7102 -3.5402 1.8866 40 1 6.4059 -2.0722 0.9292 41 1 8.8405 -2.4419 1.6078 42 1 8.1564 -0.8649 2.0766 43 1 7.9495 -0.3913 4.4601 44 1 7.7688 -1.7962 5.5330 45 1 3.1183 -2.6903 -1.2429 46 1 1.4504 -2.7695 -0.5881 47 1 0.1638 -1.4387 -1.9780 48 1 0.6724 0.1585 -2.5768 49 1 2.5119 -1.7702 -3.5116 50 1 3.0045 -3.0649 -6.5461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501125101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:57 Heat of formation + Delta-G solvation = -39.783099 kcal Electronic energy + Delta-G solvation = -30507.531831 eV Core-core repulsion = 26499.697315 eV Total energy + Delta-G solvation = -4007.834515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.01272 -39.76547 -38.12072 -37.48887 -34.72591 -33.18250 -33.06882 -32.04449 -31.18027 -30.06791 -28.86706 -26.70126 -25.93376 -25.49726 -24.10736 -23.88130 -22.69973 -21.86164 -20.40608 -19.57989 -19.05255 -17.64345 -16.90982 -16.75856 -16.63138 -16.09576 -15.83004 -15.61258 -15.54460 -14.89060 -14.66355 -14.37074 -14.15598 -13.86239 -13.67695 -13.48136 -13.36503 -13.12476 -12.87819 -12.65843 -12.46914 -12.42748 -12.32160 -11.99289 -11.88333 -11.76965 -11.67889 -11.55484 -11.00620 -10.93868 -10.84549 -10.52685 -10.42305 -10.27937 -10.13608 -9.98119 -9.72538 -9.66644 -9.09230 -8.94912 -8.87129 -8.62943 -6.92094 -5.75393 -3.04775 0.66997 0.98028 2.66269 2.92226 3.42512 3.44086 3.48952 3.51119 3.60114 4.25682 4.28103 4.38547 4.53829 4.56852 4.62776 4.65360 4.81659 4.85170 4.91540 4.95730 4.99479 5.14857 5.19222 5.27758 5.39772 5.40637 5.42426 5.47731 5.53005 5.55338 5.59731 5.63608 5.76983 5.81744 5.91986 5.96732 6.00033 6.03609 6.06872 6.10959 6.17344 6.22357 6.27989 6.38698 6.46239 6.55397 6.69988 6.76931 6.83114 7.55136 7.69978 8.13609 8.42832 9.53983 10.11357 10.45382 11.47259 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015744 B = 0.002548 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.975105 B =10986.788023 C =12329.510688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.082 0.918 4 C 0.102 3.898 5 N -0.615 5.615 6 C 0.573 3.427 7 O -0.528 6.528 8 C -0.121 4.121 9 C -0.087 4.087 10 C -0.128 4.128 11 C -0.092 4.092 12 C -0.130 4.130 13 C -0.018 4.018 14 C -0.116 4.116 15 C 0.057 3.943 16 O -0.374 6.374 17 C 0.103 3.897 18 C 0.117 3.883 19 C -0.103 4.103 20 H 0.082 0.918 21 C 0.165 3.835 22 N -0.734 5.734 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.901 7.481 25.772 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 H 0.100 0.900 4 C -0.021 4.021 5 N -0.348 5.348 6 C 0.362 3.638 7 O -0.405 6.405 8 C -0.124 4.124 9 C -0.106 4.106 10 C -0.146 4.146 11 C -0.110 4.110 12 C -0.130 4.130 13 C -0.019 4.019 14 C -0.153 4.153 15 C -0.020 4.020 16 O -0.292 6.292 17 C 0.026 3.974 18 C -0.005 4.005 19 C -0.123 4.123 20 H 0.100 0.900 21 C 0.037 3.963 22 N -0.378 5.378 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.122 0.878 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.043 0.957 48 H 0.041 0.959 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.258 6.744 25.481 26.877 hybrid contribution -0.682 0.020 -0.930 1.153 sum 4.576 6.764 24.550 25.873 Atomic orbital electron populations 1.21901 0.93913 1.02480 1.01949 1.22047 0.96691 0.99328 0.93806 0.89956 1.22409 0.94313 0.88443 0.96955 1.48778 1.32604 1.34862 1.18527 1.17871 0.78738 0.82802 0.84414 1.90820 1.56381 1.26196 1.67086 1.19852 0.93670 1.03768 0.95126 1.21433 0.99541 0.96312 0.93275 1.21009 0.95726 1.01009 0.96888 1.21129 0.92912 0.98266 0.98724 1.20194 0.97059 1.01660 0.94116 1.19467 0.92722 0.95361 0.94373 1.21206 0.93212 1.03409 0.97482 1.22723 0.96345 1.00116 0.82777 1.88169 1.63512 1.61577 1.15976 1.21457 0.85845 0.95773 0.94326 1.22584 0.99683 0.97298 0.80894 1.22524 1.00398 0.94532 0.94811 0.89970 1.20703 0.93284 0.96129 0.86136 1.42404 1.13146 1.72130 1.10139 1.19193 0.94503 1.32790 0.90729 0.91197 1.24750 0.96305 1.01546 0.98320 1.69659 1.12492 1.46379 1.29446 0.86201 0.79353 0.77278 0.83405 1.21749 1.21771 1.20780 0.92995 0.91283 0.92108 0.91323 0.90803 0.85069 0.85228 0.85460 0.88224 0.89216 0.87917 0.92580 0.91464 0.87767 0.89253 0.90617 0.95708 0.95851 0.78283 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 7.79 37.16 0.29 -1.23 16 2 C -0.10 -1.14 3.52 -89.24 -0.31 -1.45 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.10 1.09 4.95 -2.98 -0.01 1.08 16 5 N -0.61 -8.74 3.29 -170.87 -0.56 -9.30 16 6 C 0.57 8.90 6.85 -12.33 -0.08 8.82 16 7 O -0.53 -10.06 15.24 5.32 0.08 -9.98 16 8 C -0.12 -1.54 5.45 -104.90 -0.57 -2.12 16 9 C -0.09 -0.86 7.97 -39.24 -0.31 -1.18 16 10 C -0.13 -1.02 10.03 -39.70 -0.40 -1.42 16 11 C -0.09 -0.73 9.66 -39.40 -0.38 -1.11 16 12 C -0.13 -1.28 5.80 -104.65 -0.61 -1.89 16 13 C -0.02 -0.22 5.80 -104.21 -0.60 -0.83 16 14 C -0.12 -1.44 4.55 -27.89 -0.13 -1.57 16 15 C 0.06 0.57 6.84 37.14 0.25 0.82 16 16 O -0.37 -4.06 10.83 -35.23 -0.38 -4.44 16 17 C 0.10 0.85 6.66 35.99 0.24 1.09 16 18 C 0.12 1.91 6.44 -2.13 -0.01 1.90 16 19 C -0.10 -1.60 3.00 -88.74 -0.27 -1.86 16 20 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 21 C 0.17 3.13 4.45 -4.04 -0.02 3.12 16 22 N -0.73 -18.30 5.52 -59.91 -0.33 -18.63 16 23 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 27 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 30 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.78 6.77 -51.93 -0.35 0.43 16 33 H 0.06 0.68 7.52 -51.93 -0.39 0.29 16 34 H 0.07 0.63 6.99 -51.93 -0.36 0.27 16 35 H 0.07 0.70 6.71 -51.93 -0.35 0.35 16 36 H 0.13 1.12 6.02 -52.49 -0.32 0.80 16 37 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.10 1.39 7.85 -51.93 -0.41 0.98 16 40 H 0.09 1.21 7.20 -51.93 -0.37 0.84 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.49 8.07 -51.93 -0.42 0.08 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.72 7.89 -51.93 -0.41 1.31 16 46 H 0.08 1.25 7.95 -51.93 -0.41 0.84 16 47 H 0.03 0.47 6.82 -51.93 -0.35 0.12 16 48 H 0.02 0.45 7.38 -51.93 -0.38 0.07 16 49 H 0.38 10.20 7.67 -40.82 -0.31 9.88 16 50 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -33.79 390.01 -10.56 -44.35 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.77 Total: 7.51 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -3.18 Total: -5.15 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.17 Total: -55.61 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.30 Total: -14.42 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.79 -10.56 -44.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501125101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.569 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds