Wall clock time and date at job start Wed Apr 1 2020 03:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.29408 * 2 1 4 4 C 1.54002 * 110.32420 * 122.13643 * 2 1 3 5 5 N 1.47490 * 107.08235 * 120.30091 * 4 2 1 6 6 C 1.34776 * 127.03477 * 154.28823 * 5 4 2 7 7 O 1.21551 * 120.00225 * 175.34957 * 6 5 4 8 8 C 1.47849 * 119.99891 * 355.35774 * 6 5 4 9 9 C 1.39467 * 120.01462 * 40.60083 * 8 6 5 10 10 C 1.37931 * 119.69490 * 179.97438 * 9 8 6 11 11 C 1.38208 * 120.06408 * 0.11340 * 10 9 8 12 12 C 1.38757 * 120.60914 * 0.02562 * 11 10 9 13 13 C 1.37674 * 119.85989 * 359.49752 * 12 11 10 14 14 C 1.50714 * 121.42091 * 180.82302 * 13 12 11 15 15 C 1.52973 * 109.76627 * 342.97153 * 14 13 12 16 16 O 1.43206 * 108.45348 * 49.22659 * 15 14 13 17 17 C 1.43011 * 112.85540 * 289.13511 * 16 15 14 18 18 C 1.48115 * 105.93296 * 334.55368 * 5 4 2 19 19 C 1.54624 * 110.41456 * 237.80930 * 2 1 3 20 20 H 1.08998 * 110.73938 * 144.57790 * 19 2 1 21 21 C 1.53003 * 110.74016 * 21.42988 * 19 2 1 22 22 N 1.46493 * 109.47200 * 175.00042 * 21 19 2 23 23 C 1.36932 * 120.00050 * 180.02562 * 22 21 19 24 24 H 1.07998 * 120.00162 * 359.97438 * 23 22 21 25 25 C 1.38813 * 119.99974 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00338 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99847 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47500 * 89.99957 * 27 25 23 29 29 H 1.48501 * 109.47073 * 209.99830 * 27 25 23 30 30 H 1.48500 * 109.47187 * 329.99608 * 27 25 23 31 31 H 1.08996 * 109.47471 * 299.32106 * 1 2 3 32 32 H 1.09005 * 109.47033 * 59.31963 * 1 2 3 33 33 H 1.08994 * 109.47110 * 179.31280 * 1 2 3 34 34 H 1.08998 * 109.91564 * 0.93989 * 4 2 1 35 35 H 1.08998 * 110.07535 * 239.74790 * 4 2 1 36 36 H 1.08001 * 120.15008 * 359.93067 * 9 8 6 37 37 H 1.08007 * 119.96689 * 180.08814 * 10 9 8 38 38 H 1.07998 * 119.69512 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.42265 * 103.06509 * 14 13 12 40 40 H 1.09000 * 109.42172 * 222.87770 * 14 13 12 41 41 H 1.09002 * 109.63598 * 168.91168 * 15 14 13 42 42 H 1.08997 * 109.63731 * 289.32526 * 15 14 13 43 43 H 1.09006 * 109.91876 * 291.70505 * 17 16 15 44 44 H 1.09000 * 108.85189 * 172.15209 * 17 16 15 45 45 H 1.08996 * 110.66240 * 157.73572 * 18 5 4 46 46 H 1.09004 * 110.66132 * 280.85187 * 18 5 4 47 47 H 1.08994 * 109.47029 * 295.00381 * 21 19 2 48 48 H 1.09005 * 109.46814 * 55.00164 * 21 19 2 49 49 H 0.97001 * 120.00159 * 0.02562 * 22 21 19 50 50 H 0.96999 * 120.00237 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8824 -1.8836 0.7102 6 6 3.8974 -2.5042 1.3436 7 8 4.4324 -3.4694 0.8339 8 6 4.3600 -2.0111 2.6584 9 6 3.4327 -1.5887 3.6107 10 6 3.8716 -1.1304 4.8354 11 6 5.2245 -1.0885 5.1148 12 6 6.1538 -1.5042 4.1719 13 6 5.7275 -1.9729 2.9496 14 6 6.7052 -2.4504 1.9067 15 6 8.1083 -1.9412 2.2414 16 8 8.3810 -2.2345 3.6163 17 6 7.6182 -1.4282 4.5182 18 6 2.3641 -2.1779 -0.6457 19 6 2.0694 -0.7720 -1.2264 20 1 2.9825 -0.3104 -1.6020 21 6 1.0101 -0.8476 -2.3278 22 7 1.5871 -1.4776 -3.5179 23 6 0.8209 -1.6534 -4.6391 24 1 -0.2088 -1.3280 -4.6460 25 6 1.3676 -2.2508 -5.7666 26 7 2.6224 -2.6478 -5.7581 27 14 0.3222 -2.4912 -7.2959 28 1 0.4457 -1.2989 -8.1725 29 1 0.7880 -3.6954 -8.0295 30 1 -1.0982 -2.6706 -6.9014 31 1 -0.3634 0.5032 0.8960 32 1 -0.3633 0.5244 -0.8839 33 1 -0.3633 -1.0275 -0.0123 34 1 1.2330 -1.1569 1.8101 35 1 2.6785 -0.1107 1.8387 36 1 2.3760 -1.6196 3.3899 37 1 3.1572 -0.8035 5.5766 38 1 5.5615 -0.7290 6.0758 39 1 6.7102 -3.5402 1.8866 40 1 6.4059 -2.0722 0.9292 41 1 8.8405 -2.4419 1.6078 42 1 8.1564 -0.8649 2.0766 43 1 7.9495 -0.3913 4.4601 44 1 7.7688 -1.7962 5.5330 45 1 3.1183 -2.6903 -1.2429 46 1 1.4504 -2.7695 -0.5881 47 1 0.1638 -1.4387 -1.9780 48 1 0.6724 0.1585 -2.5768 49 1 2.5119 -1.7702 -3.5116 50 1 3.0045 -3.0649 -6.5461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501125101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:56 Heat of formation + Delta-G solvation = -61.798948 kcal Electronic energy + Delta-G solvation = -30508.486509 eV Core-core repulsion = 26499.697315 eV Total energy + Delta-G solvation = -4008.789194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.94789 -40.76098 -39.24263 -38.35658 -36.48402 -34.46551 -34.00734 -32.92947 -32.81671 -30.99721 -30.23838 -27.75604 -27.06464 -26.52163 -25.41998 -24.81057 -24.08584 -23.09968 -21.18589 -20.63503 -20.33912 -19.11677 -18.38067 -17.64124 -17.54947 -17.00778 -16.94843 -16.70532 -16.41454 -16.31247 -15.92555 -15.37345 -15.35279 -15.12625 -14.95059 -14.69184 -14.40774 -14.31417 -13.87019 -13.84050 -13.62801 -13.49622 -13.31081 -13.12352 -12.95842 -12.84011 -12.76138 -12.71990 -12.59937 -12.37370 -12.16541 -11.86908 -11.75434 -11.64117 -11.54345 -11.38589 -11.10409 -10.91319 -10.67794 -9.94937 -9.75264 -9.65731 -9.00518 -7.95544 -5.25017 -0.12377 0.25614 1.45776 1.48104 1.56481 1.57530 1.83755 2.55096 2.64181 2.87233 3.26353 3.38328 3.52311 3.56797 3.61136 3.69331 3.81199 3.85202 4.01229 4.09599 4.13478 4.19993 4.26863 4.33967 4.36791 4.42837 4.46429 4.53376 4.54716 4.62020 4.64792 4.71816 4.77546 4.78622 4.80843 4.86808 4.88740 4.98771 5.03632 5.13433 5.20963 5.22933 5.30438 5.36522 5.37704 5.44429 5.49569 5.53333 5.87208 6.04870 6.25995 6.42630 6.96232 7.31668 8.08307 8.29702 9.28280 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015744 B = 0.002548 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.975105 B =10986.788023 C =12329.510688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.101 0.899 4 C 0.102 3.898 5 N -0.613 5.613 6 C 0.566 3.434 7 O -0.582 6.582 8 C -0.145 4.145 9 C -0.088 4.088 10 C -0.118 4.118 11 C -0.081 4.081 12 C -0.135 4.135 13 C -0.047 4.047 14 C -0.112 4.112 15 C 0.063 3.937 16 O -0.392 6.392 17 C 0.096 3.904 18 C 0.121 3.879 19 C -0.095 4.095 20 H 0.064 0.936 21 C 0.167 3.833 22 N -0.750 5.750 23 C -0.242 4.242 24 H 0.081 0.919 25 C -0.080 4.080 26 N -0.973 5.973 27 Si 0.975 3.025 28 H -0.286 1.286 29 H -0.299 1.299 30 H -0.266 1.266 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.129 0.871 45 H 0.044 0.956 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.033 0.967 49 H 0.370 0.630 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 10.186 29.605 31.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.120 0.880 4 C -0.019 4.019 5 N -0.345 5.345 6 C 0.357 3.643 7 O -0.463 6.463 8 C -0.148 4.148 9 C -0.106 4.106 10 C -0.136 4.136 11 C -0.099 4.099 12 C -0.135 4.135 13 C -0.048 4.048 14 C -0.150 4.150 15 C -0.013 4.013 16 O -0.311 6.311 17 C 0.020 3.980 18 C -0.002 4.002 19 C -0.115 4.115 20 H 0.082 0.918 21 C 0.041 3.959 22 N -0.392 5.392 23 C -0.373 4.373 24 H 0.099 0.901 25 C -0.272 4.272 26 N -0.624 5.624 27 Si 0.804 3.196 28 H -0.213 1.213 29 H -0.226 1.226 30 H -0.191 1.191 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.164 0.836 37 H 0.186 0.814 38 H 0.185 0.815 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.146 0.854 45 H 0.063 0.937 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.201 0.799 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.439 9.509 29.364 31.056 hybrid contribution -0.160 -0.785 -1.995 2.150 sum 3.279 8.723 27.368 28.911 Atomic orbital electron populations 1.21895 0.92592 1.02271 1.03258 1.22058 0.97644 0.99621 0.91393 0.88028 1.22675 0.94862 0.87494 0.96881 1.48828 1.32672 1.35556 1.17453 1.18541 0.78199 0.82141 0.85457 1.90779 1.58036 1.28719 1.68770 1.19722 0.94615 1.06253 0.94211 1.21648 0.99671 0.95831 0.93440 1.21464 0.96574 0.99125 0.96400 1.21608 0.92573 0.96220 0.99454 1.20468 0.98513 1.01179 0.93379 1.19570 0.92459 0.97240 0.95514 1.21052 0.95431 1.01490 0.96987 1.22682 0.94775 1.00843 0.83042 1.88138 1.64062 1.62653 1.16206 1.21783 0.84650 0.96829 0.94725 1.22320 0.98141 0.97580 0.82162 1.22348 0.98920 0.94588 0.95663 0.91765 1.20864 0.94171 0.95785 0.85065 1.42690 1.12536 1.72528 1.11483 1.19659 0.95032 1.31206 0.91447 0.90145 1.25628 0.97557 1.02332 1.01697 1.69843 1.14445 1.48112 1.29995 0.85115 0.78350 0.76703 0.79457 1.21256 1.22571 1.19095 0.89580 0.92181 0.93005 0.88676 0.88614 0.83620 0.81416 0.81549 0.91290 0.91811 0.87400 0.91124 0.89301 0.85374 0.93678 0.90911 0.94929 0.94907 0.79927 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.79 71.98 0.56 -2.00 16 2 C -0.09 -1.82 3.52 -9.90 -0.03 -1.85 16 3 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.10 1.95 4.95 86.53 0.43 2.38 16 5 N -0.61 -17.96 3.29 -812.79 -2.67 -20.63 16 6 C 0.57 18.76 6.85 86.79 0.59 19.35 16 7 O -0.58 -24.76 15.24 -3.88 -0.06 -24.82 16 8 C -0.15 -3.70 5.45 -20.04 -0.11 -3.81 16 9 C -0.09 -1.48 7.97 22.49 0.18 -1.30 16 10 C -0.12 -1.30 10.03 22.19 0.22 -1.08 16 11 C -0.08 -0.90 9.66 22.39 0.22 -0.69 16 12 C -0.14 -2.36 5.80 -19.88 -0.12 -2.48 16 13 C -0.05 -1.16 5.80 -19.60 -0.11 -1.28 16 14 C -0.11 -3.09 4.55 29.84 0.14 -2.96 16 15 C 0.06 1.32 6.84 71.97 0.49 1.81 16 16 O -0.39 -8.25 10.83 -148.98 -1.61 -9.86 16 17 C 0.10 1.35 6.66 71.23 0.47 1.82 16 18 C 0.12 4.23 6.44 86.73 0.56 4.79 16 19 C -0.10 -3.03 3.00 -9.58 -0.03 -3.06 16 20 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 21 C 0.17 6.40 4.45 86.38 0.38 6.79 16 22 N -0.75 -38.74 5.52 -343.47 -1.90 -40.64 16 23 C -0.24 -13.63 9.99 84.03 0.84 -12.80 16 24 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 25 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 26 N -0.97 -61.82 13.06 21.65 0.28 -61.53 16 27 Si 0.97 47.01 29.55 68.60 2.03 49.03 16 28 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 29 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 30 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.20 6.77 -2.38 -0.02 1.19 16 33 H 0.05 1.03 7.52 -2.39 -0.02 1.01 16 34 H 0.10 1.37 6.99 -2.39 -0.02 1.35 16 35 H 0.10 1.47 6.71 -2.39 -0.02 1.46 16 36 H 0.15 1.95 6.02 -2.91 -0.02 1.93 16 37 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 39 H 0.07 2.23 7.85 -2.39 -0.02 2.21 16 40 H 0.06 2.00 7.20 -2.39 -0.02 1.98 16 41 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 42 H 0.07 1.24 8.07 -2.39 -0.02 1.22 16 43 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.04 1.95 7.89 -2.39 -0.02 1.93 16 46 H 0.07 2.54 7.95 -2.39 -0.02 2.53 16 47 H 0.03 1.22 6.82 -2.39 -0.02 1.21 16 48 H 0.03 1.22 7.38 -2.38 -0.02 1.21 16 49 H 0.37 20.90 7.67 -92.71 -0.71 20.19 16 50 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -79.99 390.01 1.46 -78.53 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.24 Total: 30.54 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.15 Total: -0.62 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -4.29 Total: -122.80 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.67 Total: -34.68 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -79.99 1.46 -78.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501125101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.727 kcal (2) G-P(sol) polarization free energy of solvation -79.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds