Wall clock time and date at job start Wed Apr 1 2020 03:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47161 * 2 1 4 4 O 1.42903 * 109.47110 * 119.99583 * 2 1 3 5 5 C 1.42896 * 114.00333 * 150.00147 * 4 2 1 6 6 C 1.53000 * 109.47525 * 180.02562 * 5 4 2 7 7 N 1.46896 * 109.47041 * 64.99524 * 6 5 4 8 8 C 1.46907 * 111.00140 * 180.02562 * 7 6 5 9 9 H 1.09005 * 109.45566 * 325.03102 * 8 7 6 10 10 C 1.53035 * 109.45982 * 85.00080 * 8 7 6 11 11 C 1.53191 * 109.31327 * 181.39007 * 10 8 7 12 12 N 1.46926 * 108.89109 * 305.29292 * 11 10 8 13 13 C 1.34778 * 120.63336 * 233.68039 * 12 11 10 14 14 O 1.21273 * 120.00022 * 180.02562 * 13 12 11 15 15 C 1.50706 * 119.99581 * 0.02562 * 13 12 11 16 16 S 1.81003 * 109.46546 * 179.97438 * 15 13 12 17 17 C 1.76209 * 99.99529 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99795 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99642 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00342 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99858 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47097 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47034 * 120.00093 * 21 19 17 24 24 H 1.48494 * 109.47287 * 240.00354 * 21 19 17 25 25 C 1.47207 * 118.55531 * 53.54119 * 12 11 10 26 26 C 1.53038 * 109.46064 * 205.07373 * 8 7 6 27 27 H 1.08996 * 109.50003 * 58.66123 * 26 8 7 28 28 C 1.52995 * 109.49696 * 298.56241 * 26 8 7 29 29 H 1.09001 * 109.47507 * 300.00618 * 1 2 3 30 30 H 1.09008 * 109.46846 * 60.00342 * 1 2 3 31 31 H 1.09002 * 109.47418 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47634 * 239.99932 * 2 1 3 33 33 H 1.09001 * 109.46956 * 59.99596 * 3 2 1 34 34 H 1.09002 * 109.46903 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46650 * 299.99588 * 3 2 1 36 36 H 1.08996 * 109.47123 * 60.00050 * 5 4 2 37 37 H 1.09006 * 109.47162 * 300.00604 * 5 4 2 38 38 H 1.09000 * 109.46948 * 304.99953 * 6 5 4 39 39 H 1.08991 * 109.47570 * 185.00049 * 6 5 4 40 40 H 1.00903 * 111.00653 * 303.95703 * 7 6 5 41 41 H 1.09003 * 109.49576 * 61.43676 * 10 8 7 42 42 H 1.09004 * 109.49734 * 301.34044 * 10 8 7 43 43 H 1.09002 * 109.58786 * 65.15336 * 11 10 8 44 44 H 1.08996 * 109.58870 * 185.43616 * 11 10 8 45 45 H 1.09001 * 109.46865 * 299.99350 * 15 13 12 46 46 H 1.08994 * 109.47133 * 59.99884 * 15 13 12 47 47 H 0.97002 * 119.99975 * 179.97438 * 20 19 17 48 48 H 1.08996 * 109.53610 * 186.67231 * 25 12 11 49 49 H 1.09002 * 109.68003 * 66.36699 * 25 12 11 50 50 H 1.09002 * 109.47511 * 59.99929 * 28 26 8 51 51 H 1.09001 * 109.47383 * 180.02562 * 28 26 8 52 52 H 1.09005 * 109.47056 * 300.00193 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2659 -1.3244 0.9888 6 6 3.6754 -2.0090 2.2944 7 7 2.7228 -3.0837 2.6035 8 6 3.0848 -3.7646 3.8538 9 1 4.1703 -3.8037 3.9449 10 6 2.5010 -2.9951 5.0409 11 6 2.9095 -3.6885 6.3444 12 7 2.4996 -5.0980 6.2822 13 6 1.7420 -5.6366 7.2582 14 8 1.4107 -6.8015 7.1955 15 6 1.3068 -4.7912 8.4274 16 16 0.3089 -5.7928 9.5576 17 6 -0.0524 -4.5903 10.7939 18 1 0.3263 -3.5837 10.6952 19 6 -0.8247 -4.9366 11.8940 20 7 -1.2866 -6.1633 12.0140 21 14 -1.2084 -3.6617 13.2043 22 1 -0.5771 -2.3687 12.8368 23 1 -2.6792 -3.4830 13.3053 24 1 -0.6744 -4.1197 14.5120 25 6 2.9317 -5.9063 5.1303 26 6 2.5230 -5.1881 3.8403 27 1 2.9211 -5.7282 2.9814 28 6 0.9968 -5.1338 3.7477 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 4.0199 -0.5873 0.7127 37 1 3.1809 -2.0706 0.1988 38 1 3.6741 -1.2786 3.1035 39 1 4.6750 -2.4295 2.1863 40 1 1.7789 -2.7295 2.6452 41 1 1.4138 -2.9771 4.9635 42 1 2.8835 -1.9744 5.0364 43 1 3.9908 -3.6274 6.4675 44 1 2.4179 -3.2018 7.1867 45 1 2.1858 -4.4172 8.9524 46 1 0.7137 -3.9507 8.0672 47 1 -1.8260 -6.4053 12.7830 48 1 2.4528 -6.8846 5.1713 49 1 4.0146 -6.0284 5.1531 50 1 0.7064 -4.6202 2.8312 51 1 0.5970 -6.1479 3.7385 52 1 0.5995 -4.5948 4.6078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568350306.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:54 Heat of formation + Delta-G solvation = -116.295773 kcal Electronic energy + Delta-G solvation = -28450.336359 eV Core-core repulsion = 24574.627957 eV Total energy + Delta-G solvation = -3875.708402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.41340 -39.62449 -39.00398 -36.37990 -34.59767 -34.39362 -33.39046 -31.92184 -30.91257 -29.03157 -28.05711 -27.81987 -27.36154 -24.97392 -23.93904 -22.80819 -22.19711 -21.33590 -19.85743 -19.39376 -18.22103 -17.75450 -17.01009 -16.92005 -16.85125 -16.64890 -16.40617 -15.83783 -15.76341 -15.56492 -15.41326 -15.07579 -14.57272 -14.46709 -14.36411 -14.09990 -13.82196 -13.59979 -13.44051 -13.39691 -13.17549 -13.08179 -13.05893 -12.92530 -12.71326 -12.69149 -12.64468 -12.46840 -12.22192 -12.15500 -11.93146 -11.70406 -11.62872 -11.52094 -11.28644 -11.16855 -10.83471 -10.45398 -10.27212 -9.66573 -9.25807 -8.68224 -8.35601 -6.13958 1.25040 1.40554 1.45178 1.56553 1.59163 2.11753 2.26357 2.79346 2.98398 3.17270 3.24777 3.61525 3.74993 3.92745 3.97458 4.04303 4.07826 4.14353 4.22779 4.23135 4.27438 4.33206 4.38092 4.42612 4.44043 4.49711 4.57388 4.66651 4.73853 4.75125 4.76289 4.81591 4.85957 4.90426 4.92341 4.94284 4.99960 5.05064 5.15169 5.17913 5.21300 5.31109 5.33853 5.40725 5.42786 5.63242 6.13243 6.18928 6.30673 6.38845 6.47213 7.05500 7.16478 8.73896 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013254 B = 0.002151 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.099483 B =13015.745622 C =14279.942940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.172 4.172 4 O -0.404 6.404 5 C 0.062 3.938 6 C 0.062 3.938 7 N -0.682 5.682 8 C 0.102 3.898 9 H 0.094 0.906 10 C -0.158 4.158 11 C 0.105 3.895 12 N -0.602 5.602 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.123 4.123 16 S -0.152 6.152 17 C -0.544 4.544 18 H 0.082 0.918 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.273 1.273 25 C 0.113 3.887 26 C -0.081 4.081 27 H 0.099 0.901 28 C -0.139 4.139 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.036 0.964 39 H 0.098 0.902 40 H 0.345 0.655 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.271 0.729 48 H 0.068 0.932 49 H 0.089 0.911 50 H 0.069 0.931 51 H 0.037 0.963 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.989 15.836 -27.007 33.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.229 4.229 4 O -0.324 6.324 5 C -0.014 4.014 6 C -0.067 4.067 7 N -0.312 5.312 8 C -0.008 4.008 9 H 0.112 0.888 10 C -0.198 4.198 11 C -0.018 4.018 12 N -0.336 5.336 13 C 0.321 3.679 14 O -0.446 6.446 15 C -0.274 4.274 16 S 0.076 5.924 17 C -0.692 4.692 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.198 1.198 25 C -0.009 4.009 26 C -0.100 4.100 27 H 0.117 0.883 28 C -0.197 4.197 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.116 0.884 40 H 0.163 0.837 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.107 0.893 50 H 0.088 0.912 51 H 0.056 0.944 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.644 13.559 -27.281 32.985 hybrid contribution -0.411 2.214 1.541 2.729 sum 12.233 15.773 -25.740 32.573 Atomic orbital electron populations 1.21878 0.93606 1.02478 1.02788 1.22174 0.95125 0.92689 0.87949 1.22278 1.01518 0.96390 1.02758 1.87883 1.37514 1.70334 1.36667 1.22653 0.85505 0.95231 0.98036 1.22061 0.96903 0.92094 0.95629 1.60624 1.06765 1.30234 1.33602 1.21473 0.99998 0.92422 0.86920 0.88798 1.22624 1.01734 1.00225 0.95197 1.21907 1.01554 0.79230 0.99066 1.48106 1.51282 1.12627 1.21594 1.20061 0.77462 0.87061 0.83308 1.90667 1.56684 1.18911 1.78298 1.23362 1.03941 1.02347 0.97758 1.85588 1.65303 1.19167 1.22366 1.23211 1.38649 0.98565 1.08787 0.90022 1.26145 0.94506 0.98371 1.00223 1.70192 1.34041 1.20014 1.30493 0.84896 0.78169 0.77864 0.76950 1.18023 1.19914 1.19828 1.21834 1.00261 0.94795 0.84051 1.21391 0.95859 0.96227 0.96570 0.88279 1.21736 0.95897 1.00800 1.01221 0.92758 0.89803 0.92577 0.91493 0.92784 0.92347 0.90428 0.91906 0.92523 0.94586 0.88364 0.83658 0.92207 0.89288 0.88813 0.89826 0.87573 0.87977 0.91982 0.91374 0.89323 0.91243 0.94418 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.56 71.98 0.69 -1.04 16 2 C 0.08 0.91 3.34 30.59 0.10 1.01 16 3 C -0.17 -1.67 9.53 71.98 0.69 -0.99 16 4 O -0.40 -6.15 9.51 -148.98 -1.42 -7.57 16 5 C 0.06 0.70 6.09 71.98 0.44 1.14 16 6 C 0.06 0.69 5.90 86.30 0.51 1.20 16 7 N -0.68 -9.67 5.81 -491.44 -2.85 -12.53 16 8 C 0.10 1.50 2.13 44.94 0.10 1.59 16 9 H 0.09 1.14 7.80 -2.38 -0.02 1.12 16 10 C -0.16 -2.59 4.99 30.67 0.15 -2.44 16 11 C 0.11 2.07 6.33 86.36 0.55 2.62 16 12 N -0.60 -16.54 2.42 -818.19 -1.98 -18.52 16 13 C 0.53 20.83 7.72 87.66 0.68 21.51 16 14 O -0.57 -27.38 15.29 -3.01 -0.05 -27.43 16 15 C -0.12 -5.10 4.50 71.24 0.32 -4.78 16 16 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 17 C -0.54 -31.54 9.50 67.95 0.65 -30.89 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.91 -56.60 13.22 21.65 0.29 -56.31 16 21 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C 0.11 2.64 5.84 86.31 0.50 3.15 16 26 C -0.08 -1.50 2.91 -10.72 -0.03 -1.53 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 C -0.14 -3.19 8.46 71.98 0.61 -2.58 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.66 7.79 -2.39 -0.02 0.64 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.52 7.87 -2.39 -0.02 0.51 16 35 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.54 7.87 -2.39 -0.02 0.53 16 37 H 0.06 0.65 8.09 -2.38 -0.02 0.63 16 38 H 0.04 0.43 7.41 -2.39 -0.02 0.42 16 39 H 0.10 0.83 8.05 -2.39 -0.02 0.81 16 40 H 0.34 5.81 7.32 -89.69 -0.66 5.16 16 41 H 0.06 1.21 6.34 -2.39 -0.02 1.20 16 42 H 0.09 1.20 7.43 -2.39 -0.02 1.18 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.76 5.93 -2.39 -0.01 1.75 16 45 H 0.11 3.98 7.94 -2.39 -0.02 3.96 16 46 H 0.10 3.91 7.70 -2.40 -0.02 3.89 16 47 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 48 H 0.07 2.00 7.02 -2.39 -0.02 1.99 16 49 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.07 1.41 7.25 -2.39 -0.02 1.39 16 51 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.04 0.97 5.97 -2.38 -0.01 0.95 16 Total: -1.00 -76.10 417.15 1.49 -74.61 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.23 Total: 22.31 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 6.41 Total: -10.86 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -4.55 Total: -87.36 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -1.46 Total: -35.00 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -76.10 1.49 -74.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568350306.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.686 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds