Wall clock time and date at job start Wed Apr 1 2020 03:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00300 * 2 1 4 4 C 1.53009 * 109.46968 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46952 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46756 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.46893 * 180.02562 * 6 5 4 8 8 C 1.46899 * 110.99959 * 180.02562 * 7 6 5 9 9 H 1.09007 * 109.45634 * 324.96604 * 8 7 6 10 10 C 1.53070 * 109.44608 * 84.79445 * 8 7 6 11 11 C 1.53195 * 109.29524 * 181.23659 * 10 8 7 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 8 13 13 C 1.34784 * 120.63188 * 233.51696 * 12 11 10 14 14 O 1.21280 * 119.99866 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99526 * 359.97438 * 13 12 11 16 16 S 1.81003 * 109.46503 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99581 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99586 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99506 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00488 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47395 * 89.99773 * 21 19 17 23 23 H 1.48497 * 109.47463 * 210.00286 * 21 19 17 24 24 H 1.48503 * 109.46875 * 330.00166 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 C 1.53039 * 109.45920 * 205.00065 * 8 7 6 27 27 H 1.09002 * 109.49876 * 58.67240 * 26 8 7 28 28 C 1.52998 * 109.49648 * 298.57730 * 26 8 7 29 29 H 1.08999 * 109.46960 * 59.99212 * 1 2 3 30 30 H 1.08997 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46439 * 299.99997 * 1 2 3 32 32 H 1.08994 * 109.47471 * 60.00593 * 3 2 1 33 33 H 1.08998 * 109.47470 * 299.99955 * 3 2 1 34 34 H 1.08994 * 109.46758 * 59.99890 * 4 3 2 35 35 H 1.08998 * 109.46771 * 300.00117 * 4 3 2 36 36 H 1.09000 * 109.46822 * 60.00104 * 5 4 3 37 37 H 1.09001 * 109.47060 * 299.99920 * 5 4 3 38 38 H 1.09000 * 109.47160 * 60.00568 * 6 5 4 39 39 H 1.08994 * 109.47789 * 300.00170 * 6 5 4 40 40 H 1.00902 * 110.99856 * 303.95735 * 7 6 5 41 41 H 1.08997 * 109.38860 * 61.35846 * 10 8 7 42 42 H 1.09003 * 109.62046 * 301.25189 * 10 8 7 43 43 H 1.09002 * 109.58720 * 185.71834 * 11 10 8 44 44 H 1.08996 * 109.58651 * 65.43731 * 11 10 8 45 45 H 1.08996 * 109.47104 * 299.99859 * 15 13 12 46 46 H 1.08994 * 109.47167 * 60.00297 * 15 13 12 47 47 H 0.96998 * 119.99921 * 179.97438 * 20 19 17 48 48 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 49 49 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 50 50 H 1.08997 * 109.47256 * 300.15605 * 28 26 8 51 51 H 1.09000 * 109.47485 * 60.15968 * 28 26 8 52 52 H 1.09005 * 109.47116 * 180.16184 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1844 -0.0006 5 6 4.1580 2.5821 -0.0013 6 6 5.6832 2.4611 -0.0013 7 7 6.2808 3.8031 -0.0013 8 6 7.7477 3.7261 -0.0019 9 1 8.0665 2.8666 0.5878 10 6 8.2492 3.5689 -1.4396 11 6 9.7771 3.4579 -1.4335 12 7 10.3352 4.6146 -0.7200 13 6 11.2712 5.3926 -1.2992 14 8 11.7244 6.3444 -0.6995 15 6 11.7552 5.0791 -2.6915 16 16 13.0013 6.2955 -3.1851 17 6 13.3802 5.7063 -4.8019 18 1 12.8782 4.8322 -5.1896 19 6 14.3246 6.3652 -5.5769 20 7 14.6079 5.9248 -6.7846 21 14 15.1933 7.8767 -4.9063 22 1 16.4296 7.4624 -4.1953 23 1 15.5476 8.7827 -6.0282 24 1 14.2935 8.5865 -3.9620 25 6 9.8541 4.9069 0.6372 26 6 8.3257 5.0053 0.6079 27 1 7.9494 5.1263 1.6238 28 6 7.9075 6.2089 -0.2389 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.6888 1.8463 0.8900 33 1 1.6888 1.8463 -0.8899 34 1 3.8567 0.6437 -0.8908 35 1 3.8575 0.6433 0.8891 36 1 3.8368 3.1232 0.8887 37 1 3.8360 3.1228 -0.8913 38 1 6.0047 1.9199 -0.8911 39 1 6.0049 1.9206 0.8888 40 1 5.9472 4.3475 -0.7826 41 1 7.9499 4.4387 -2.0243 42 1 7.8208 2.6687 -1.8802 43 1 10.1469 3.4479 -2.4588 44 1 10.0747 2.5389 -0.9288 45 1 12.1950 4.0819 -2.7073 46 1 10.9153 5.1168 -3.3852 47 1 15.2676 6.3854 -7.3264 48 1 10.1560 4.1062 1.3123 49 1 10.2767 5.8518 0.9791 50 1 8.2829 6.0865 -1.2548 51 1 6.8199 6.2785 -0.2595 52 1 8.3217 7.1194 0.1942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667157278.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:43 Heat of formation + Delta-G solvation = -97.484117 kcal Electronic energy + Delta-G solvation = -27750.477726 eV Core-core repulsion = 23875.585058 eV Total energy + Delta-G solvation = -3874.892668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40413 -38.59299 -38.20557 -36.20926 -34.21338 -32.83658 -32.44493 -30.99569 -29.54869 -28.39305 -26.73351 -26.33130 -25.60040 -24.21678 -23.18810 -22.58349 -21.64759 -20.20177 -18.67976 -17.76674 -16.94717 -16.80849 -16.74752 -16.08393 -15.67525 -15.60144 -15.48960 -15.15575 -15.01223 -14.94963 -14.42866 -14.30035 -13.80892 -13.52016 -13.28014 -13.21136 -12.90954 -12.81386 -12.79211 -12.45006 -12.13507 -12.03943 -11.98079 -11.85177 -11.72935 -11.57851 -11.40323 -11.25768 -11.14897 -11.13292 -11.01127 -10.77395 -10.60936 -10.49974 -10.16191 -9.86023 -9.45463 -9.00881 -8.73700 -8.54700 -8.48882 -6.92363 -6.29611 -4.01275 2.71908 2.94420 3.18510 3.21245 3.33002 3.50332 3.58918 3.83914 4.32540 4.39600 4.43582 4.46238 4.53093 4.69335 4.74423 4.77111 4.81724 4.85794 4.86846 4.91605 4.97985 5.03449 5.09460 5.09981 5.10965 5.18192 5.21529 5.26339 5.33810 5.39172 5.45236 5.49366 5.58101 5.63307 5.69218 5.74144 5.74656 5.78756 5.82933 5.91197 5.97834 5.98255 6.04143 6.28527 6.60188 6.65818 6.71153 7.03544 7.48340 7.93369 8.40411 8.45873 9.16730 10.79603 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020562 B = 0.001723 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.426350 B =16243.426908 C =17122.425864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.061 3.939 4 C -0.118 4.118 5 C -0.115 4.115 6 C 0.059 3.941 7 N -0.684 5.684 8 C 0.095 3.905 9 H 0.078 0.922 10 C -0.168 4.168 11 C 0.112 3.888 12 N -0.615 5.615 13 C 0.534 3.466 14 O -0.519 6.519 15 C -0.122 4.122 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.087 0.913 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.116 3.884 26 C -0.091 4.091 27 H 0.086 0.914 28 C -0.144 4.144 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.342 0.658 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.271 0.729 48 H 0.063 0.937 49 H 0.095 0.905 50 H 0.055 0.945 51 H 0.057 0.943 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.909 -10.167 15.563 31.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.016 4.016 4 C -0.156 4.156 5 C -0.153 4.153 6 C -0.070 4.070 7 N -0.314 5.314 8 C -0.015 4.015 9 H 0.096 0.904 10 C -0.207 4.207 11 C -0.012 4.012 12 N -0.351 5.351 13 C 0.322 3.678 14 O -0.393 6.393 15 C -0.272 4.272 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.105 0.895 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.008 4.008 26 C -0.110 4.110 27 H 0.104 0.896 28 C -0.202 4.202 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.160 0.840 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.114 0.886 50 H 0.074 0.926 51 H 0.076 0.924 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.069 -8.823 16.969 31.532 hybrid contribution -0.168 -0.725 -1.745 1.897 sum -25.237 -9.548 15.224 30.982 Atomic orbital electron populations 1.22746 0.80926 1.02827 1.00017 1.87871 1.19817 1.28242 1.95440 1.22563 0.94222 0.84562 1.00244 1.21469 0.92932 0.97666 1.03499 1.21462 0.94779 0.96149 1.02898 1.21963 0.93846 0.90437 1.00788 1.60609 1.06110 1.14513 1.50123 1.21556 0.86890 0.98236 0.94851 0.90393 1.22707 0.96526 1.02861 0.98650 1.21625 0.92812 0.88476 0.98331 1.48029 1.41222 1.29509 1.16377 1.20263 0.78198 0.81734 0.87622 1.90685 1.56017 1.28131 1.64479 1.23309 1.03490 1.05010 0.95408 1.84800 1.48927 1.37802 1.20068 1.22310 1.28384 1.17717 0.98474 0.89458 1.24705 0.95335 0.97191 0.94017 1.69938 1.32617 1.40194 1.08947 0.86736 0.81776 0.83356 0.79998 1.19200 1.19940 1.15925 1.21628 0.93181 1.02738 0.83227 1.21457 0.94245 0.94806 1.00530 0.89593 1.21793 1.00930 0.97215 1.00214 0.94043 0.89584 0.94044 0.93235 0.93317 0.91111 0.90952 0.90848 0.91887 0.95001 0.90920 0.83977 0.90586 0.90969 0.89165 0.91420 0.88655 0.88673 0.91951 0.91894 0.88649 0.92564 0.92372 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.19 10.70 -35.23 -0.38 -3.56 16 3 C 0.06 0.38 5.94 37.16 0.22 0.60 16 4 C -0.12 -0.69 5.58 -26.73 -0.15 -0.84 16 5 C -0.11 -0.62 5.47 -26.73 -0.15 -0.77 16 6 C 0.06 0.36 5.48 -3.82 -0.02 0.34 16 7 N -0.68 -4.85 5.81 -106.67 -0.62 -5.47 16 8 C 0.09 0.75 2.12 -67.66 -0.14 0.60 16 9 H 0.08 0.61 7.80 -51.93 -0.40 0.21 16 10 C -0.17 -1.40 5.00 -26.59 -0.13 -1.53 16 11 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16 12 N -0.62 -8.12 2.41 -172.77 -0.42 -8.54 16 13 C 0.53 9.60 7.72 -10.98 -0.08 9.51 16 14 O -0.52 -11.20 15.27 5.56 0.08 -11.12 16 15 C -0.12 -2.37 4.50 36.01 0.16 -2.21 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 18 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.51 13.97 55.49 0.78 -25.73 16 21 Si 0.86 21.81 27.74 -169.99 -4.71 17.09 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 25 C 0.12 1.31 5.83 -3.71 -0.02 1.29 16 26 C -0.09 -0.84 2.91 -90.50 -0.26 -1.10 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 C -0.14 -1.49 8.46 37.16 0.31 -1.18 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.17 8.14 -51.92 -0.42 -0.25 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.03 0.20 7.41 -51.93 -0.38 -0.18 16 39 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 40 H 0.34 2.38 7.76 -39.29 -0.30 2.07 16 41 H 0.08 0.71 6.35 -51.93 -0.33 0.38 16 42 H 0.07 0.52 7.42 -51.93 -0.39 0.14 16 43 H 0.09 0.97 5.93 -51.93 -0.31 0.67 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 1.74 7.94 -51.92 -0.41 1.33 16 46 H 0.10 1.73 7.69 -51.92 -0.40 1.33 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.10 1.28 7.00 -51.92 -0.36 0.92 16 50 H 0.06 0.67 5.98 -51.93 -0.31 0.36 16 51 H 0.06 0.53 7.25 -51.93 -0.38 0.15 16 52 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 416.09 15.07 6.27 6.27 Total: -1.00 -33.51 416.09 -9.43 -42.93 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -9.47 Total: -1.40 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 1.04 Total: -4.85 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: -0.26 Total: -39.74 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.29 Total: -14.68 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.51 -9.43 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667157278.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.552 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds