Wall clock time and date at job start Wed Apr 1 2020 03:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00300 * 2 1 4 4 C 1.53009 * 109.46968 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46952 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46756 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.46893 * 180.02562 * 6 5 4 8 8 C 1.46899 * 110.99959 * 180.02562 * 7 6 5 9 9 H 1.09007 * 109.45634 * 324.96604 * 8 7 6 10 10 C 1.53070 * 109.44608 * 84.79445 * 8 7 6 11 11 C 1.53195 * 109.29524 * 181.23659 * 10 8 7 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 8 13 13 C 1.34784 * 120.63188 * 233.51696 * 12 11 10 14 14 O 1.21280 * 119.99866 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99526 * 359.97438 * 13 12 11 16 16 S 1.81003 * 109.46503 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99581 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99586 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99506 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00488 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47395 * 89.99773 * 21 19 17 23 23 H 1.48497 * 109.47463 * 210.00286 * 21 19 17 24 24 H 1.48503 * 109.46875 * 330.00166 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 C 1.53039 * 109.45920 * 205.00065 * 8 7 6 27 27 H 1.09002 * 109.49876 * 58.67240 * 26 8 7 28 28 C 1.52998 * 109.49648 * 298.57730 * 26 8 7 29 29 H 1.08999 * 109.46960 * 59.99212 * 1 2 3 30 30 H 1.08997 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46439 * 299.99997 * 1 2 3 32 32 H 1.08994 * 109.47471 * 60.00593 * 3 2 1 33 33 H 1.08998 * 109.47470 * 299.99955 * 3 2 1 34 34 H 1.08994 * 109.46758 * 59.99890 * 4 3 2 35 35 H 1.08998 * 109.46771 * 300.00117 * 4 3 2 36 36 H 1.09000 * 109.46822 * 60.00104 * 5 4 3 37 37 H 1.09001 * 109.47060 * 299.99920 * 5 4 3 38 38 H 1.09000 * 109.47160 * 60.00568 * 6 5 4 39 39 H 1.08994 * 109.47789 * 300.00170 * 6 5 4 40 40 H 1.00902 * 110.99856 * 303.95735 * 7 6 5 41 41 H 1.08997 * 109.38860 * 61.35846 * 10 8 7 42 42 H 1.09003 * 109.62046 * 301.25189 * 10 8 7 43 43 H 1.09002 * 109.58720 * 185.71834 * 11 10 8 44 44 H 1.08996 * 109.58651 * 65.43731 * 11 10 8 45 45 H 1.08996 * 109.47104 * 299.99859 * 15 13 12 46 46 H 1.08994 * 109.47167 * 60.00297 * 15 13 12 47 47 H 0.96998 * 119.99921 * 179.97438 * 20 19 17 48 48 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 49 49 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 50 50 H 1.08997 * 109.47256 * 300.15605 * 28 26 8 51 51 H 1.09000 * 109.47485 * 60.15968 * 28 26 8 52 52 H 1.09005 * 109.47116 * 180.16184 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1844 -0.0006 5 6 4.1580 2.5821 -0.0013 6 6 5.6832 2.4611 -0.0013 7 7 6.2808 3.8031 -0.0013 8 6 7.7477 3.7261 -0.0019 9 1 8.0665 2.8666 0.5878 10 6 8.2492 3.5689 -1.4396 11 6 9.7771 3.4579 -1.4335 12 7 10.3352 4.6146 -0.7200 13 6 11.2712 5.3926 -1.2992 14 8 11.7244 6.3444 -0.6995 15 6 11.7552 5.0791 -2.6915 16 16 13.0013 6.2955 -3.1851 17 6 13.3802 5.7063 -4.8019 18 1 12.8782 4.8322 -5.1896 19 6 14.3246 6.3652 -5.5769 20 7 14.6079 5.9248 -6.7846 21 14 15.1933 7.8767 -4.9063 22 1 16.4296 7.4624 -4.1953 23 1 15.5476 8.7827 -6.0282 24 1 14.2935 8.5865 -3.9620 25 6 9.8541 4.9069 0.6372 26 6 8.3257 5.0053 0.6079 27 1 7.9494 5.1263 1.6238 28 6 7.9075 6.2089 -0.2389 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.6888 1.8463 0.8900 33 1 1.6888 1.8463 -0.8899 34 1 3.8567 0.6437 -0.8908 35 1 3.8575 0.6433 0.8891 36 1 3.8368 3.1232 0.8887 37 1 3.8360 3.1228 -0.8913 38 1 6.0047 1.9199 -0.8911 39 1 6.0049 1.9206 0.8888 40 1 5.9472 4.3475 -0.7826 41 1 7.9499 4.4387 -2.0243 42 1 7.8208 2.6687 -1.8802 43 1 10.1469 3.4479 -2.4588 44 1 10.0747 2.5389 -0.9288 45 1 12.1950 4.0819 -2.7073 46 1 10.9153 5.1168 -3.3852 47 1 15.2676 6.3854 -7.3264 48 1 10.1560 4.1062 1.3123 49 1 10.2767 5.8518 0.9791 50 1 8.2829 6.0865 -1.2548 51 1 6.8199 6.2785 -0.2595 52 1 8.3217 7.1194 0.1942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667157278.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:41 Heat of formation + Delta-G solvation = -119.432906 kcal Electronic energy + Delta-G solvation = -27751.429497 eV Core-core repulsion = 23875.585058 eV Total energy + Delta-G solvation = -3875.844439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.45881 -39.41636 -38.92700 -36.95908 -35.04024 -34.67946 -33.62540 -31.75835 -30.96397 -28.92207 -27.93209 -27.50649 -26.89048 -25.00741 -23.98053 -23.15964 -22.10054 -21.36603 -19.87994 -19.38512 -18.27465 -17.31720 -17.25602 -17.17309 -16.88873 -16.80906 -16.47444 -16.14614 -15.94427 -15.68876 -15.49348 -15.28929 -15.07229 -14.93176 -14.55197 -14.15454 -13.99503 -13.64979 -13.55937 -13.35904 -13.32196 -13.08786 -13.02731 -12.78141 -12.69866 -12.53813 -12.50569 -12.38791 -12.15555 -11.98375 -11.87383 -11.83873 -11.65071 -11.49760 -11.26260 -11.17950 -10.87988 -10.62401 -10.53172 -9.69442 -9.26342 -9.01157 -8.52458 -6.23489 0.96953 1.30576 1.45466 1.53109 1.54112 2.08182 2.24370 2.67479 2.75288 2.85912 3.26375 3.50572 3.71929 3.89389 3.98127 4.03363 4.05766 4.09740 4.16621 4.22978 4.34185 4.35678 4.37469 4.42236 4.46282 4.51999 4.52571 4.56785 4.68058 4.72775 4.74594 4.79013 4.83661 4.85657 4.86159 4.93045 4.96113 5.02747 5.13049 5.18120 5.21249 5.35255 5.40326 5.43313 5.61307 5.69758 6.09979 6.13678 6.23835 6.26433 6.49180 6.92836 7.10202 8.59879 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020562 B = 0.001723 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.426350 B =16243.426908 C =17122.425864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.057 3.943 4 C -0.113 4.113 5 C -0.106 4.106 6 C 0.061 3.939 7 N -0.685 5.685 8 C 0.102 3.898 9 H 0.088 0.912 10 C -0.160 4.160 11 C 0.103 3.897 12 N -0.600 5.600 13 C 0.534 3.466 14 O -0.563 6.563 15 C -0.106 4.106 16 S -0.176 6.176 17 C -0.529 4.529 18 H 0.062 0.938 19 C 0.048 3.952 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.258 1.258 24 H -0.238 1.238 25 C 0.112 3.888 26 C -0.082 4.082 27 H 0.097 0.903 28 C -0.140 4.140 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.344 0.656 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.277 0.723 48 H 0.086 0.914 49 H 0.071 0.929 50 H 0.038 0.962 51 H 0.072 0.928 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.493 -10.970 16.884 34.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.342 6.342 3 C -0.019 4.019 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.068 4.068 7 N -0.314 5.314 8 C -0.008 4.008 9 H 0.106 0.894 10 C -0.199 4.199 11 C -0.020 4.020 12 N -0.334 5.334 13 C 0.322 3.678 14 O -0.442 6.442 15 C -0.257 4.257 16 S 0.050 5.950 17 C -0.676 4.676 18 H 0.080 0.920 19 C -0.158 4.158 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.182 1.182 24 H -0.162 1.162 25 C -0.010 4.010 26 C -0.101 4.101 27 H 0.115 0.885 28 C -0.197 4.197 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.162 0.838 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.086 0.914 48 H 0.104 0.896 49 H 0.090 0.910 50 H 0.057 0.943 51 H 0.091 0.909 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -26.701 -9.668 18.293 33.780 hybrid contribution 0.160 -0.616 -2.106 2.200 sum -26.541 -10.285 16.187 32.745 Atomic orbital electron populations 1.22906 0.79677 1.03699 1.00798 1.87828 1.21373 1.29338 1.95614 1.22652 0.94328 0.84114 1.00816 1.21418 0.92868 0.97793 1.03024 1.21366 0.94294 0.95786 1.02970 1.21962 0.94102 0.89810 1.00902 1.60573 1.05436 1.15150 1.50283 1.21452 0.87428 0.97531 0.94388 0.89379 1.22655 0.94880 1.03336 0.99077 1.21922 0.94106 0.87946 0.97978 1.48020 1.39330 1.29060 1.16984 1.19960 0.79120 0.81900 0.86862 1.90669 1.58081 1.30217 1.65220 1.23276 1.01969 1.03473 0.96968 1.84727 1.51610 1.40599 1.18018 1.22443 1.28111 1.16932 1.00146 0.91989 1.25532 0.96059 0.99897 0.94285 1.70012 1.33552 1.41715 1.10086 0.85884 0.80599 0.80249 0.79749 1.18682 1.18242 1.16211 1.21807 0.94574 1.02438 0.82180 1.21392 0.92537 0.95123 1.01082 0.88454 1.21749 1.01705 0.97102 0.99180 0.93318 0.88788 0.93185 0.92593 0.92776 0.91628 0.91349 0.90999 0.91552 0.94757 0.90885 0.83770 0.91615 0.89103 0.89781 0.89013 0.87237 0.87392 0.91357 0.89615 0.90998 0.94309 0.90918 0.94344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.37 10.70 -148.98 -1.59 -7.97 16 3 C 0.06 0.63 5.94 71.99 0.43 1.05 16 4 C -0.11 -1.14 5.58 30.60 0.17 -0.96 16 5 C -0.11 -0.91 5.47 30.59 0.17 -0.74 16 6 C 0.06 0.58 5.48 86.30 0.47 1.05 16 7 N -0.68 -7.70 5.81 -491.38 -2.85 -10.55 16 8 C 0.10 1.30 2.12 44.95 0.10 1.39 16 9 H 0.09 1.02 7.80 -2.38 -0.02 1.01 16 10 C -0.16 -2.22 5.00 30.68 0.15 -2.06 16 11 C 0.10 1.85 6.34 86.36 0.55 2.39 16 12 N -0.60 -14.92 2.41 -818.90 -1.98 -16.90 16 13 C 0.53 18.95 7.72 87.66 0.68 19.63 16 14 O -0.56 -24.57 15.27 -3.03 -0.05 -24.61 16 15 C -0.11 -4.09 4.50 71.24 0.32 -3.77 16 16 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 17 C -0.53 -30.89 10.04 67.95 0.68 -30.21 16 18 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 19 C 0.05 2.81 5.50 84.86 0.47 3.28 16 20 N -0.92 -55.71 13.97 21.65 0.30 -55.41 16 21 Si 0.91 45.19 27.74 68.60 1.90 47.09 16 22 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 25 C 0.11 2.37 5.83 86.36 0.50 2.87 16 26 C -0.08 -1.33 2.91 -10.72 -0.03 -1.36 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 C -0.14 -2.74 8.46 71.98 0.61 -2.13 16 29 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.03 0.32 7.41 -2.39 -0.02 0.31 16 39 H 0.07 0.72 8.05 -2.39 -0.02 0.70 16 40 H 0.34 3.83 7.76 -89.69 -0.70 3.13 16 41 H 0.07 1.09 6.35 -2.39 -0.02 1.08 16 42 H 0.09 0.99 7.42 -2.39 -0.02 0.97 16 43 H 0.08 1.64 5.93 -2.39 -0.01 1.62 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.11 3.90 7.94 -2.40 -0.02 3.88 16 46 H 0.11 3.87 7.69 -2.40 -0.02 3.85 16 47 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 48 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.07 1.91 7.00 -2.38 -0.02 1.89 16 50 H 0.04 0.89 5.98 -2.39 -0.01 0.88 16 51 H 0.07 1.19 7.25 -2.39 -0.02 1.17 16 52 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -73.24 416.09 1.35 -71.89 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.15 Total: 14.61 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 6.51 Total: -8.09 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -4.53 Total: -82.86 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -1.64 Total: -32.58 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -73.24 1.35 -71.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667157278.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.539 kcal (2) G-P(sol) polarization free energy of solvation -73.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds