Wall clock time and date at job start Wed Apr 1 2020 02:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.45995 * 2 1 4 4 C 1.53033 * 109.46231 * 240.03113 * 2 1 3 5 5 C 1.53186 * 109.31569 * 178.61373 * 4 2 1 6 6 N 1.46924 * 108.77670 * 54.63355 * 5 4 2 7 7 C 1.34778 * 120.63292 * 126.37035 * 6 5 4 8 8 O 1.21281 * 119.99599 * 175.96233 * 7 6 5 9 9 C 1.50696 * 119.99922 * 355.69383 * 7 6 5 10 10 H 1.09002 * 110.82927 * 297.72911 * 9 7 6 11 11 C 1.54708 * 110.94469 * 61.45257 * 9 7 6 12 12 O 1.43763 * 102.79395 * 92.79014 * 11 9 7 13 13 C 1.36134 * 109.29126 * 27.54660 * 12 11 9 14 14 C 1.39283 * 129.88352 * 161.46539 * 13 12 11 15 15 C 1.37925 * 120.24744 * 179.58499 * 14 13 12 16 16 C 1.38292 * 120.35327 * 0.02562 * 15 14 13 17 17 C 1.38350 * 119.75913 * 0.17980 * 16 15 14 18 18 C 1.37743 * 119.97991 * 359.97438 * 17 16 15 19 19 C 1.46934 * 118.73831 * 306.64068 * 6 5 4 20 20 H 1.08997 * 109.58402 * 293.57599 * 19 6 5 21 21 C 1.52995 * 109.58703 * 173.14544 * 19 6 5 22 22 N 1.46496 * 109.46949 * 181.15764 * 21 19 6 23 23 C 1.36936 * 120.00041 * 184.96443 * 22 21 19 24 24 H 1.07998 * 119.99961 * 359.97438 * 23 22 21 25 25 C 1.38816 * 119.99880 * 180.02562 * 23 22 21 26 26 N 1.31613 * 120.00541 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99809 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47360 * 89.99704 * 27 25 23 29 29 H 1.48498 * 109.47039 * 209.99747 * 27 25 23 30 30 H 1.48497 * 109.47352 * 329.99754 * 27 25 23 31 31 C 1.52766 * 109.00275 * 53.30940 * 19 6 5 32 32 H 1.08999 * 109.46942 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47158 * 299.97148 * 1 2 3 34 34 H 1.08996 * 109.47217 * 59.97202 * 1 2 3 35 35 H 1.08999 * 109.50294 * 58.65859 * 4 2 1 36 36 H 1.09005 * 109.51991 * 298.58249 * 4 2 1 37 37 H 1.09003 * 109.58980 * 294.84521 * 5 4 2 38 38 H 1.08998 * 109.70820 * 174.49120 * 5 4 2 39 39 H 1.09001 * 110.74494 * 211.11596 * 11 9 7 40 40 H 1.08993 * 110.74746 * 334.46004 * 11 9 7 41 41 H 1.08004 * 119.87667 * 359.55317 * 14 13 12 42 42 H 1.07998 * 119.82987 * 180.02562 * 15 14 13 43 43 H 1.07993 * 120.12108 * 180.19501 * 16 15 14 44 44 H 1.08001 * 120.01076 * 180.02562 * 17 16 15 45 45 H 1.09001 * 109.47148 * 301.15397 * 21 19 6 46 46 H 1.08994 * 109.47375 * 61.15860 * 21 19 6 47 47 H 0.97000 * 120.00338 * 4.96635 * 22 21 19 48 48 H 0.96992 * 120.00798 * 180.02562 * 26 25 23 49 49 H 1.08998 * 109.56132 * 185.55409 * 31 19 6 50 50 H 1.09003 * 109.38196 * 65.51920 * 31 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0679 -1.2487 0.0001 7 6 4.9615 -2.2577 0.0002 8 8 5.4190 -2.6623 1.0480 9 6 5.3875 -2.8870 -1.3011 10 1 4.5383 -3.3496 -1.8042 11 6 6.0753 -1.8485 -2.2186 12 8 7.4664 -2.0071 -1.8921 13 6 7.6855 -3.2807 -1.4641 14 6 8.8750 -3.9993 -1.3704 15 6 8.8691 -5.2938 -0.8944 16 6 7.6833 -5.8903 -0.5064 17 6 6.4968 -5.1848 -0.6004 18 6 6.5001 -3.8930 -1.0785 19 6 3.5672 -0.6920 1.2644 20 1 3.9097 0.3372 1.3715 21 6 4.0831 -1.5319 2.4345 22 7 3.5601 -0.9912 3.6916 23 6 3.9693 -1.5193 4.8869 24 1 4.6773 -2.3346 4.9029 25 6 3.4732 -1.0073 6.0781 26 7 2.6100 -0.0140 6.0586 27 14 4.0309 -1.7281 7.7086 28 1 5.2346 -1.0008 8.1857 29 1 2.9415 -1.5918 8.7085 30 1 4.3600 -3.1649 7.5280 31 6 2.0399 -0.7205 1.2502 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5134 0.8902 34 1 -0.3633 0.5142 -0.8897 35 1 1.6573 -0.2209 -2.1398 36 1 1.6978 -1.7557 -1.2387 37 1 3.9143 0.3409 -1.3674 38 1 3.9438 -1.2831 -2.0984 39 1 5.8960 -2.0818 -3.2681 40 1 5.7359 -0.8400 -1.9827 41 1 9.8054 -3.5412 -1.6721 42 1 9.7954 -5.8446 -0.8242 43 1 7.6834 -6.9030 -0.1313 44 1 5.5684 -5.6466 -0.2981 45 1 3.7503 -2.5631 2.3162 46 1 5.1725 -1.5013 2.4513 47 1 2.9238 -0.2591 3.6773 48 1 2.2636 0.3441 6.8909 49 1 1.6573 -0.2204 2.1398 50 1 1.6974 -1.7553 1.2388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691862155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:00 Heat of formation + Delta-G solvation = -5.591924 kcal Electronic energy + Delta-G solvation = -31419.071151 eV Core-core repulsion = 27412.719276 eV Total energy + Delta-G solvation = -4006.351875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.74350 -40.01498 -37.54587 -37.50206 -34.88913 -34.02339 -32.97957 -31.80544 -30.17137 -29.85669 -29.44505 -28.08060 -25.58298 -24.60105 -23.48906 -23.10904 -22.37147 -22.11785 -20.84581 -20.24525 -19.16695 -17.67109 -17.07420 -16.95891 -16.59816 -16.14962 -15.68390 -15.48457 -15.10648 -14.60518 -14.40602 -14.15521 -14.11721 -13.70911 -13.56085 -13.51098 -13.21637 -13.13481 -13.00585 -12.80299 -12.70559 -12.27352 -11.96195 -11.92268 -11.81395 -11.72782 -11.44108 -11.23996 -11.01935 -10.93144 -10.87637 -10.75850 -10.68208 -10.41263 -10.24048 -9.95285 -9.61476 -9.06967 -8.87428 -8.70584 -8.38318 -8.23298 -6.74515 -5.64649 -2.90768 1.16999 1.31520 2.64220 2.96071 3.11308 3.52327 3.56969 3.59634 3.64686 4.01372 4.30808 4.42379 4.56705 4.67615 4.72686 4.75650 4.82341 4.94263 4.96121 5.03881 5.10704 5.13670 5.21588 5.27752 5.32838 5.41759 5.51903 5.57069 5.58822 5.67614 5.70285 5.75666 5.83329 5.89131 5.90290 6.03995 6.15840 6.20187 6.24951 6.27980 6.30681 6.31173 6.40161 6.47069 6.56915 6.75492 7.04550 7.11182 7.29997 7.53130 7.86568 8.34814 8.57004 9.66136 10.24923 10.60081 11.59038 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008591 B = 0.003950 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.615963 B = 7086.284569 C = 9709.990466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.129 4.129 5 C 0.101 3.899 6 N -0.606 5.606 7 C 0.517 3.483 8 O -0.496 6.496 9 C -0.102 4.102 10 H 0.120 0.880 11 C 0.057 3.943 12 O -0.300 6.300 13 C 0.110 3.890 14 C -0.142 4.142 15 C -0.083 4.083 16 C -0.149 4.149 17 C -0.049 4.049 18 C -0.147 4.147 19 C 0.141 3.859 20 H 0.071 0.929 21 C 0.161 3.839 22 N -0.737 5.737 23 C -0.224 4.224 24 H 0.070 0.930 25 C -0.019 4.019 26 N -0.939 5.939 27 Si 0.905 3.095 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 C -0.121 4.121 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.023 0.977 46 H 0.056 0.944 47 H 0.378 0.622 48 H 0.253 0.747 49 H 0.087 0.913 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 -5.041 -24.853 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.022 4.022 6 N -0.341 5.341 7 C 0.303 3.697 8 O -0.369 6.369 9 C -0.124 4.124 10 H 0.138 0.862 11 C -0.019 4.019 12 O -0.214 6.214 13 C 0.065 3.935 14 C -0.160 4.160 15 C -0.101 4.101 16 C -0.167 4.167 17 C -0.067 4.067 18 C -0.148 4.148 19 C 0.039 3.961 20 H 0.089 0.911 21 C 0.035 3.965 22 N -0.383 5.383 23 C -0.355 4.355 24 H 0.088 0.912 25 C -0.213 4.213 26 N -0.589 5.589 27 Si 0.737 3.263 28 H -0.219 1.219 29 H -0.219 1.219 30 H -0.208 1.208 31 C -0.159 4.159 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.131 0.869 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.041 0.959 46 H 0.073 0.927 47 H 0.212 0.788 48 H 0.062 0.938 49 H 0.105 0.895 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.631 -5.188 -24.187 25.002 hybrid contribution -0.323 -0.048 0.922 0.978 sum 3.309 -5.236 -23.265 24.075 Atomic orbital electron populations 1.21800 0.95038 1.01765 1.01619 1.21154 0.95801 0.99559 0.94726 0.91101 1.21987 0.94501 1.01625 0.98575 1.21900 0.95052 0.99279 0.85991 1.48134 1.43210 1.35533 1.07250 1.20079 0.79366 0.80139 0.90112 1.90863 1.53665 1.60965 1.31368 1.21621 0.99091 0.95458 0.96204 0.86235 1.24089 0.78769 1.00436 0.98580 1.86848 1.27569 1.25950 1.81024 1.19548 0.94821 0.83943 0.95154 1.20207 0.95760 0.94220 1.05834 1.20866 0.98403 0.93798 0.97013 1.21024 0.92094 1.00633 1.02982 1.20299 0.98794 0.92226 0.95399 1.20134 0.93309 0.95605 1.05795 1.21516 0.93628 0.98031 0.82963 0.91078 1.21275 0.97961 0.93832 0.83477 1.42572 1.53288 1.41909 1.00553 1.19242 1.19707 1.12611 0.83985 0.91245 1.24683 1.00120 0.99048 0.97495 1.69647 1.34961 1.28465 1.25841 0.86199 0.77516 0.78507 0.84122 1.21853 1.21906 1.20840 1.21938 0.94669 1.01379 0.97897 0.92824 0.92221 0.93068 0.90886 0.91439 0.91018 0.90098 0.89419 0.86941 0.85518 0.85199 0.85420 0.85785 0.95945 0.92655 0.78772 0.93759 0.89487 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.09 -1.06 2.68 -90.58 -0.24 -1.31 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.14 5.36 -26.62 -0.14 -1.28 16 5 C 0.10 0.92 4.83 -3.72 -0.02 0.90 16 6 N -0.61 -8.43 2.97 -165.47 -0.49 -8.93 16 7 C 0.52 8.07 6.98 -10.99 -0.08 7.99 16 8 O -0.50 -10.20 11.67 5.56 0.06 -10.13 16 9 C -0.10 -1.18 2.59 -91.56 -0.24 -1.41 16 10 H 0.12 1.03 7.98 -51.93 -0.41 0.62 16 11 C 0.06 0.54 6.17 38.06 0.23 0.77 16 12 O -0.30 -3.96 11.10 -20.17 -0.22 -4.18 16 13 C 0.11 1.49 7.04 -38.96 -0.27 1.21 16 14 C -0.14 -1.67 10.06 -39.31 -0.40 -2.06 16 15 C -0.08 -0.86 10.02 -39.68 -0.40 -1.26 16 16 C -0.15 -1.64 10.07 -39.52 -0.40 -2.04 16 17 C -0.05 -0.61 10.03 -39.72 -0.40 -1.01 16 18 C -0.15 -1.95 4.94 -104.10 -0.51 -2.47 16 19 C 0.14 2.45 3.08 -67.82 -0.21 2.24 16 20 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 21 C 0.16 3.69 4.13 -4.05 -0.02 3.68 16 22 N -0.74 -19.86 5.38 -59.92 -0.32 -20.19 16 23 C -0.22 -6.72 9.99 -15.06 -0.15 -6.87 16 24 H 0.07 2.09 7.83 -52.49 -0.41 1.68 16 25 C -0.02 -0.56 5.50 -17.43 -0.10 -0.65 16 26 N -0.94 -29.25 13.06 55.49 0.72 -28.53 16 27 Si 0.90 23.62 29.55 -169.99 -5.02 18.60 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 30 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 31 C -0.12 -1.88 4.36 -26.83 -0.12 -2.00 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 38 H 0.08 0.52 4.83 -51.93 -0.25 0.27 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.11 0.96 5.87 -51.93 -0.30 0.65 16 41 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.02 0.56 7.25 -51.93 -0.38 0.18 16 46 H 0.06 1.42 6.22 -51.93 -0.32 1.09 16 47 H 0.38 10.34 6.38 -40.82 -0.26 10.08 16 48 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.09 1.57 6.90 -51.93 -0.36 1.21 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -36.20 387.28 -10.30 -46.50 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.75 Total: 7.77 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -3.11 Total: -6.74 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.09 Total: -57.64 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.16 Total: -14.32 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.02 Total: 18.60 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.20 -10.30 -46.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691862155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.909 kcal (2) G-P(sol) polarization free energy of solvation -36.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds