Wall clock time and date at job start Wed Apr 1 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.45995 * 2 1 4 4 C 1.53033 * 109.46231 * 240.03113 * 2 1 3 5 5 C 1.53186 * 109.31569 * 178.61373 * 4 2 1 6 6 N 1.46924 * 108.77670 * 54.63355 * 5 4 2 7 7 C 1.34778 * 120.63292 * 126.37035 * 6 5 4 8 8 O 1.21281 * 119.99599 * 175.96233 * 7 6 5 9 9 C 1.50696 * 119.99922 * 355.69383 * 7 6 5 10 10 H 1.09002 * 110.82927 * 297.72911 * 9 7 6 11 11 C 1.54708 * 110.94469 * 61.45257 * 9 7 6 12 12 O 1.43763 * 102.79395 * 92.79014 * 11 9 7 13 13 C 1.36134 * 109.29126 * 27.54660 * 12 11 9 14 14 C 1.39283 * 129.88352 * 161.46539 * 13 12 11 15 15 C 1.37925 * 120.24744 * 179.58499 * 14 13 12 16 16 C 1.38292 * 120.35327 * 0.02562 * 15 14 13 17 17 C 1.38350 * 119.75913 * 0.17980 * 16 15 14 18 18 C 1.37743 * 119.97991 * 359.97438 * 17 16 15 19 19 C 1.46934 * 118.73831 * 306.64068 * 6 5 4 20 20 H 1.08997 * 109.58402 * 293.57599 * 19 6 5 21 21 C 1.52995 * 109.58703 * 173.14544 * 19 6 5 22 22 N 1.46496 * 109.46949 * 181.15764 * 21 19 6 23 23 C 1.36936 * 120.00041 * 184.96443 * 22 21 19 24 24 H 1.07998 * 119.99961 * 359.97438 * 23 22 21 25 25 C 1.38816 * 119.99880 * 180.02562 * 23 22 21 26 26 N 1.31613 * 120.00541 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99809 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47360 * 89.99704 * 27 25 23 29 29 H 1.48498 * 109.47039 * 209.99747 * 27 25 23 30 30 H 1.48497 * 109.47352 * 329.99754 * 27 25 23 31 31 C 1.52766 * 109.00275 * 53.30940 * 19 6 5 32 32 H 1.08999 * 109.46942 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47158 * 299.97148 * 1 2 3 34 34 H 1.08996 * 109.47217 * 59.97202 * 1 2 3 35 35 H 1.08999 * 109.50294 * 58.65859 * 4 2 1 36 36 H 1.09005 * 109.51991 * 298.58249 * 4 2 1 37 37 H 1.09003 * 109.58980 * 294.84521 * 5 4 2 38 38 H 1.08998 * 109.70820 * 174.49120 * 5 4 2 39 39 H 1.09001 * 110.74494 * 211.11596 * 11 9 7 40 40 H 1.08993 * 110.74746 * 334.46004 * 11 9 7 41 41 H 1.08004 * 119.87667 * 359.55317 * 14 13 12 42 42 H 1.07998 * 119.82987 * 180.02562 * 15 14 13 43 43 H 1.07993 * 120.12108 * 180.19501 * 16 15 14 44 44 H 1.08001 * 120.01076 * 180.02562 * 17 16 15 45 45 H 1.09001 * 109.47148 * 301.15397 * 21 19 6 46 46 H 1.08994 * 109.47375 * 61.15860 * 21 19 6 47 47 H 0.97000 * 120.00338 * 4.96635 * 22 21 19 48 48 H 0.96992 * 120.00798 * 180.02562 * 26 25 23 49 49 H 1.08998 * 109.56132 * 185.55409 * 31 19 6 50 50 H 1.09003 * 109.38196 * 65.51920 * 31 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0679 -1.2487 0.0001 7 6 4.9615 -2.2577 0.0002 8 8 5.4190 -2.6623 1.0480 9 6 5.3875 -2.8870 -1.3011 10 1 4.5383 -3.3496 -1.8042 11 6 6.0753 -1.8485 -2.2186 12 8 7.4664 -2.0071 -1.8921 13 6 7.6855 -3.2807 -1.4641 14 6 8.8750 -3.9993 -1.3704 15 6 8.8691 -5.2938 -0.8944 16 6 7.6833 -5.8903 -0.5064 17 6 6.4968 -5.1848 -0.6004 18 6 6.5001 -3.8930 -1.0785 19 6 3.5672 -0.6920 1.2644 20 1 3.9097 0.3372 1.3715 21 6 4.0831 -1.5319 2.4345 22 7 3.5601 -0.9912 3.6916 23 6 3.9693 -1.5193 4.8869 24 1 4.6773 -2.3346 4.9029 25 6 3.4732 -1.0073 6.0781 26 7 2.6100 -0.0140 6.0586 27 14 4.0309 -1.7281 7.7086 28 1 5.2346 -1.0008 8.1857 29 1 2.9415 -1.5918 8.7085 30 1 4.3600 -3.1649 7.5280 31 6 2.0399 -0.7205 1.2502 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5134 0.8902 34 1 -0.3633 0.5142 -0.8897 35 1 1.6573 -0.2209 -2.1398 36 1 1.6978 -1.7557 -1.2387 37 1 3.9143 0.3409 -1.3674 38 1 3.9438 -1.2831 -2.0984 39 1 5.8960 -2.0818 -3.2681 40 1 5.7359 -0.8400 -1.9827 41 1 9.8054 -3.5412 -1.6721 42 1 9.7954 -5.8446 -0.8242 43 1 7.6834 -6.9030 -0.1313 44 1 5.5684 -5.6466 -0.2981 45 1 3.7503 -2.5631 2.3162 46 1 5.1725 -1.5013 2.4513 47 1 2.9238 -0.2591 3.6773 48 1 2.2636 0.3441 6.8909 49 1 1.6573 -0.2204 2.1398 50 1 1.6974 -1.7553 1.2388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691862155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:59 Heat of formation + Delta-G solvation = -29.348148 kcal Electronic energy + Delta-G solvation = -31420.101298 eV Core-core repulsion = 27412.719276 eV Total energy + Delta-G solvation = -4007.382022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.69878 -41.13694 -38.70145 -38.36487 -36.74639 -35.13117 -34.33956 -33.32283 -31.53814 -31.03749 -30.29395 -29.17884 -27.29119 -25.70236 -24.99640 -24.02351 -23.53110 -23.18197 -22.20891 -21.28062 -20.29461 -19.21530 -18.56341 -17.94894 -17.56762 -17.32346 -16.86819 -16.56030 -16.32488 -16.22021 -15.52427 -15.43947 -15.20315 -14.98697 -14.81941 -14.63070 -14.45035 -14.33507 -14.29615 -13.92721 -13.82065 -13.53339 -13.29161 -12.90573 -12.85623 -12.85081 -12.69199 -12.62501 -12.50067 -12.26332 -12.10775 -12.05225 -11.97746 -11.81366 -11.74683 -11.39279 -11.22802 -11.02699 -10.28355 -9.85754 -9.65295 -9.14581 -8.99315 -7.99449 -5.27614 0.28253 0.41725 1.40987 1.43819 1.51296 1.52829 1.85160 2.27558 2.52853 2.75289 3.12884 3.32983 3.47524 3.50472 3.74765 3.76218 3.84565 3.91233 4.05967 4.07786 4.16294 4.20117 4.21544 4.32186 4.38227 4.40555 4.49564 4.51786 4.56548 4.61933 4.67733 4.70086 4.80006 4.88748 4.90640 5.03997 5.06905 5.09674 5.17849 5.24418 5.27715 5.34346 5.40027 5.42752 5.43417 5.53199 5.54220 5.63688 5.64520 6.18010 6.23422 6.41358 7.16770 7.29607 8.03491 8.31720 9.24067 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008591 B = 0.003950 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.615963 B = 7086.284569 C = 9709.990466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.077 0.923 4 C -0.122 4.122 5 C 0.091 3.909 6 N -0.601 5.601 7 C 0.508 3.492 8 O -0.560 6.560 9 C -0.093 4.093 10 H 0.154 0.846 11 C 0.056 3.944 12 O -0.322 6.322 13 C 0.089 3.911 14 C -0.155 4.155 15 C -0.082 4.082 16 C -0.156 4.156 17 C -0.070 4.070 18 C -0.169 4.169 19 C 0.151 3.849 20 H 0.066 0.934 21 C 0.176 3.824 22 N -0.744 5.744 23 C -0.246 4.246 24 H 0.058 0.942 25 C -0.069 4.069 26 N -0.966 5.966 27 Si 0.973 3.027 28 H -0.285 1.285 29 H -0.285 1.285 30 H -0.276 1.276 31 C -0.110 4.110 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.149 0.851 44 H 0.124 0.876 45 H -0.001 1.001 46 H 0.026 0.974 47 H 0.374 0.626 48 H 0.254 0.746 49 H 0.053 0.947 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -5.061 -27.711 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.160 4.160 5 C -0.029 4.029 6 N -0.335 5.335 7 C 0.296 3.704 8 O -0.437 6.437 9 C -0.114 4.114 10 H 0.171 0.829 11 C -0.018 4.018 12 O -0.236 6.236 13 C 0.044 3.956 14 C -0.173 4.173 15 C -0.099 4.099 16 C -0.173 4.173 17 C -0.088 4.088 18 C -0.170 4.170 19 C 0.047 3.953 20 H 0.084 0.916 21 C 0.050 3.950 22 N -0.390 5.390 23 C -0.378 4.378 24 H 0.076 0.924 25 C -0.261 4.261 26 N -0.616 5.616 27 Si 0.801 3.199 28 H -0.212 1.212 29 H -0.211 1.211 30 H -0.202 1.202 31 C -0.149 4.149 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.131 0.869 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.159 0.841 42 H 0.179 0.821 43 H 0.167 0.833 44 H 0.142 0.858 45 H 0.017 0.983 46 H 0.044 0.956 47 H 0.207 0.793 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.542 -5.195 -27.114 27.833 hybrid contribution -0.270 -0.065 1.817 1.838 sum 3.272 -5.260 -25.297 26.044 Atomic orbital electron populations 1.21776 0.94166 1.01793 1.02207 1.21143 0.96492 0.99532 0.93591 0.90458 1.21987 0.93977 1.01613 0.98380 1.22375 0.95462 1.00809 0.84279 1.48210 1.42590 1.35030 1.07651 1.20948 0.78599 0.79768 0.91089 1.90832 1.55936 1.62924 1.34027 1.21653 1.00038 0.95593 0.94142 0.82882 1.24434 0.76829 1.00312 1.00241 1.86798 1.29576 1.25947 1.81287 1.19862 0.95506 0.84248 0.96022 1.20589 0.96068 0.94853 1.05813 1.21263 0.99460 0.93508 0.95696 1.21379 0.91872 1.01613 1.02482 1.20552 0.99617 0.92683 0.95974 1.20409 0.94125 0.96122 1.06388 1.21111 0.94755 0.96473 0.82924 0.91565 1.21076 0.96032 0.93516 0.84407 1.42718 1.53205 1.41701 1.01342 1.19474 1.19890 1.12769 0.85629 0.92352 1.25502 1.00273 0.99542 1.00830 1.69789 1.35730 1.29401 1.26710 0.85158 0.77205 0.77968 0.79546 1.21166 1.21139 1.20150 1.21795 0.93125 1.00656 0.99326 0.93102 0.93934 0.90175 0.86879 0.91632 0.89113 0.86481 0.85097 0.85857 0.84062 0.82131 0.83302 0.85772 0.98289 0.95570 0.79293 0.93751 0.92800 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.19 71.98 0.66 -2.06 16 2 C -0.09 -1.87 2.68 -10.77 -0.03 -1.90 16 3 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 4 C -0.12 -1.69 5.36 30.67 0.16 -1.52 16 5 C 0.09 1.34 4.83 86.36 0.42 1.75 16 6 N -0.60 -16.42 2.97 -795.83 -2.37 -18.78 16 7 C 0.51 16.03 6.98 87.66 0.61 16.64 16 8 O -0.56 -24.55 11.67 -3.03 -0.04 -24.59 16 9 C -0.09 -2.00 2.59 -11.40 -0.03 -2.03 16 10 H 0.15 2.17 7.98 -2.39 -0.02 2.15 16 11 C 0.06 0.90 6.17 72.56 0.45 1.35 16 12 O -0.32 -8.10 11.10 -95.07 -1.06 -9.15 16 13 C 0.09 2.35 7.04 22.68 0.16 2.51 16 14 C -0.15 -3.54 10.06 22.45 0.23 -3.31 16 15 C -0.08 -1.60 10.02 22.21 0.22 -1.38 16 16 C -0.16 -3.32 10.07 22.31 0.22 -3.10 16 17 C -0.07 -1.78 10.03 22.18 0.22 -1.55 16 18 C -0.17 -4.44 4.94 -19.53 -0.10 -4.54 16 19 C 0.15 5.46 3.08 44.83 0.14 5.60 16 20 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 21 C 0.18 8.66 4.13 86.38 0.36 9.02 16 22 N -0.74 -42.62 5.38 -343.47 -1.85 -44.47 16 23 C -0.25 -15.42 9.99 84.03 0.84 -14.58 16 24 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 25 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 26 N -0.97 -61.58 13.06 21.65 0.28 -61.30 16 27 Si 0.97 49.51 29.55 68.60 2.03 51.54 16 28 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 29 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 30 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 31 C -0.11 -3.57 4.36 30.53 0.13 -3.44 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.09 1.08 8.13 -2.39 -0.02 1.06 16 38 H 0.12 0.92 4.83 -2.39 -0.01 0.91 16 39 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.12 1.66 5.87 -2.39 -0.01 1.64 16 41 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 42 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 43 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.12 2.97 8.06 -2.91 -0.02 2.94 16 45 H 0.00 -0.04 7.25 -2.39 -0.02 -0.06 16 46 H 0.03 1.46 6.22 -2.39 -0.01 1.45 16 47 H 0.37 21.69 6.38 -92.71 -0.59 21.10 16 48 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 49 H 0.05 2.08 6.90 -2.39 -0.02 2.06 16 50 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -85.39 387.28 2.50 -82.89 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.35 Total: 30.21 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.14 Total: -6.34 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -3.93 Total: -124.55 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.09 Total: -33.74 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.03 Total: 51.54 kcal Total: -85.39 2.50 -82.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691862155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.542 kcal (2) G-P(sol) polarization free energy of solvation -85.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds