Wall clock time and date at job start Wed Apr 1 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47254 * 2 1 4 4 C 1.53008 * 109.47313 * 119.99917 * 2 1 3 5 5 O 1.42894 * 109.46577 * 65.00146 * 4 2 1 6 6 C 1.42904 * 113.99616 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47219 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47395 * 64.99431 * 7 6 5 9 9 C 1.48538 * 111.00123 * 307.40108 * 8 7 6 10 10 C 1.54933 * 103.22579 * 200.28130 * 9 8 7 11 11 C 1.54593 * 102.92591 * 37.41127 * 10 9 8 12 12 H 1.09004 * 110.30922 * 219.12663 * 11 10 9 13 13 N 1.46497 * 110.31135 * 96.96077 * 11 10 9 14 14 C 1.34778 * 120.00215 * 89.27981 * 13 11 10 15 15 O 1.21284 * 119.99713 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99988 * 180.02562 * 14 13 11 17 17 S 1.81006 * 109.46793 * 180.02562 * 16 14 13 18 18 C 1.76205 * 99.99619 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00338 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99619 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00187 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99666 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47335 * 59.99922 * 22 20 18 24 24 H 1.48499 * 109.47116 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47271 * 299.99831 * 22 20 18 26 26 C 1.47899 * 111.00068 * 190.00265 * 8 7 6 27 27 H 1.09000 * 110.08580 * 26.40119 * 26 8 7 28 28 C 1.53001 * 109.92079 * 265.19639 * 26 8 7 29 29 H 1.08998 * 109.47235 * 59.99596 * 1 2 3 30 30 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47332 * 299.99726 * 1 2 3 32 32 H 1.08994 * 109.47462 * 240.00037 * 2 1 3 33 33 H 1.08996 * 109.47600 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47329 * 300.00346 * 3 2 1 35 35 H 1.09003 * 109.46728 * 59.99904 * 3 2 1 36 36 H 1.08997 * 109.46957 * 305.00359 * 4 2 1 37 37 H 1.08999 * 109.46812 * 185.00209 * 4 2 1 38 38 H 1.08997 * 109.47492 * 59.99922 * 6 5 4 39 39 H 1.09006 * 109.47103 * 299.99258 * 6 5 4 40 40 H 1.09002 * 109.46752 * 304.99873 * 7 6 5 41 41 H 1.09000 * 109.47068 * 184.99876 * 7 6 5 42 42 H 1.09007 * 110.66246 * 318.71191 * 9 8 7 43 43 H 1.08993 * 110.66671 * 81.67342 * 9 8 7 44 44 H 1.09007 * 110.72333 * 279.05054 * 10 9 8 45 45 H 1.09004 * 110.72411 * 155.77248 * 10 9 8 46 46 H 0.97006 * 120.00292 * 269.28845 * 13 11 10 47 47 H 1.08996 * 109.47330 * 300.00320 * 16 14 13 48 48 H 1.09002 * 109.47145 * 60.00811 * 16 14 13 49 49 H 0.97003 * 120.00440 * 179.97438 * 21 20 18 50 50 H 1.09000 * 109.47210 * 302.41472 * 28 26 8 51 51 H 1.09007 * 109.46611 * 62.40887 * 28 26 8 52 52 H 1.08990 * 109.47328 * 182.40893 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.6620 -2.0981 1.1920 6 6 2.0914 -2.8660 2.3180 7 6 1.6345 -4.3166 2.1503 8 7 2.3128 -4.9128 0.9917 9 6 2.1413 -4.0684 -0.2182 10 6 2.4266 -5.0524 -1.3805 11 6 1.7966 -6.3720 -0.8790 12 1 2.4267 -7.2191 -1.1503 13 7 0.4522 -6.5379 -1.4366 14 6 0.2851 -7.1650 -2.6178 15 8 1.2479 -7.5925 -3.2189 16 6 -1.0979 -7.3351 -3.1917 17 16 -0.9916 -8.2095 -4.7729 18 6 -2.6988 -8.2680 -5.2055 19 1 -3.4374 -7.8322 -4.5491 20 6 -3.0941 -8.8732 -6.3904 21 7 -2.1938 -9.4039 -7.1906 22 14 -4.9038 -8.9345 -6.8494 23 1 -5.4339 -7.5517 -6.9586 24 1 -5.0608 -9.6297 -8.1522 25 1 -5.6554 -9.6716 -5.8019 26 6 1.7260 -6.2274 0.6526 27 1 0.6879 -6.2701 0.9820 28 6 2.5305 -7.3450 1.3193 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6053 -0.2618 2.1370 37 1 3.1263 -0.6443 1.2951 38 1 1.6575 -2.4510 3.2277 39 1 3.1788 -2.8337 2.3865 40 1 0.5563 -4.3419 1.9926 41 1 1.8839 -4.8822 3.0481 42 1 1.1222 -3.6862 -0.2792 43 1 2.8592 -3.2483 -0.2200 44 1 3.4997 -5.1702 -1.5316 45 1 1.9415 -4.7174 -2.2974 46 1 -0.3180 -6.1962 -0.9558 47 1 -1.7106 -7.9115 -2.4986 48 1 -1.5496 -6.3554 -3.3476 49 1 -2.4700 -9.8272 -8.0186 50 1 3.5710 -7.2838 1.0003 51 1 2.4756 -7.2357 2.4025 52 1 2.1181 -8.3116 1.0303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692141731.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:57 Heat of formation + Delta-G solvation = -115.384746 kcal Electronic energy + Delta-G solvation = -28440.374955 eV Core-core repulsion = 24564.706058 eV Total energy + Delta-G solvation = -3875.668897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29648 -39.94990 -38.88643 -36.24135 -35.20240 -34.58847 -32.88531 -32.26825 -30.72381 -28.64335 -28.01350 -27.67367 -26.67230 -26.02784 -23.54672 -22.45907 -21.52374 -21.26755 -20.82615 -19.78049 -17.88039 -17.79573 -17.69135 -17.34576 -16.88268 -16.54931 -16.19461 -16.09963 -15.70146 -15.46347 -15.28662 -15.04094 -14.66471 -14.45580 -14.22683 -13.93356 -13.87414 -13.81154 -13.64356 -13.17811 -13.14086 -13.06063 -12.92172 -12.87388 -12.69063 -12.58002 -12.44706 -12.37887 -12.16061 -11.95795 -11.78649 -11.74742 -11.68699 -11.64981 -11.39923 -11.13393 -10.95394 -10.43413 -10.29025 -10.09473 -9.40358 -8.67361 -8.34805 -6.13159 1.25626 1.43479 1.45799 1.55706 1.58945 2.21591 2.27611 2.75831 2.98460 2.99059 3.31706 3.47085 3.68476 3.93815 3.95046 3.99104 4.04598 4.17931 4.21875 4.26404 4.28341 4.35270 4.42689 4.47899 4.50960 4.51717 4.56827 4.65095 4.74085 4.75303 4.79712 4.82712 4.87246 4.91804 5.00315 5.00552 5.06286 5.07141 5.13517 5.17712 5.25235 5.36119 5.40906 5.41006 5.43117 5.46142 5.91388 6.09658 6.19145 6.33584 6.45715 7.06111 7.21882 8.74161 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.002259 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.620645 B =12391.204062 C =13974.120210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.143 4.143 4 C 0.066 3.934 5 O -0.397 6.397 6 C 0.062 3.938 7 C 0.048 3.952 8 N -0.512 5.512 9 C 0.070 3.930 10 C -0.139 4.139 11 C 0.137 3.863 12 H 0.078 0.922 13 N -0.707 5.707 14 C 0.537 3.463 15 O -0.562 6.562 16 C -0.129 4.129 17 S -0.149 6.149 18 C -0.548 4.548 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.262 1.262 26 C 0.066 3.934 27 H 0.069 0.931 28 C -0.129 4.129 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.106 0.894 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.411 0.589 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.271 0.729 50 H 0.059 0.941 51 H 0.073 0.927 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 19.398 25.515 32.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.200 4.200 4 C -0.010 4.010 5 O -0.317 6.317 6 C -0.014 4.014 7 C -0.080 4.080 8 N -0.238 5.238 9 C -0.058 4.058 10 C -0.178 4.178 11 C 0.031 3.969 12 H 0.096 0.904 13 N -0.361 5.361 14 C 0.323 3.677 15 O -0.440 6.440 16 C -0.280 4.280 17 S 0.078 5.922 18 C -0.695 4.695 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.043 4.043 27 H 0.087 0.913 28 C -0.187 4.187 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.124 0.876 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.248 0.752 47 H 0.128 0.872 48 H 0.125 0.875 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.092 0.908 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.630 18.485 24.396 32.087 hybrid contribution -2.920 0.526 0.074 2.968 sum 6.710 19.011 24.470 31.705 Atomic orbital electron populations 1.21741 0.94913 1.01471 1.01690 1.21101 0.96439 0.96391 0.97554 1.21759 1.01326 0.94349 1.02597 1.22592 0.98669 0.81679 0.98066 1.88014 1.79305 1.20726 1.43697 1.22548 0.99384 0.90488 0.89001 1.22455 0.96749 0.93741 0.95028 1.64886 1.52592 1.01774 1.04533 1.23049 1.00768 0.94545 0.87389 1.22968 1.01262 0.95109 0.98461 1.21878 0.83259 0.98584 0.93150 0.90407 1.45901 1.09864 1.59082 1.21221 1.20051 0.89941 0.76691 0.81055 1.90691 1.42819 1.49906 1.60542 1.23369 0.97435 1.05516 1.01717 1.85573 1.12315 1.74155 1.20123 1.23168 0.92293 1.44148 1.09924 0.89973 1.26136 1.04199 0.93837 0.95003 1.70173 1.36185 1.36226 1.12132 0.85005 0.76256 0.79030 0.77706 1.18687 1.20345 1.18625 1.22593 0.98320 0.91636 0.91761 0.91310 1.21688 1.00153 0.95850 1.01045 0.92832 0.93424 0.92331 0.91728 0.92075 0.92000 0.91833 0.92724 0.92994 0.91332 0.92359 0.94018 0.87566 0.93374 0.89568 0.90460 0.92445 0.75184 0.87244 0.87476 0.91968 0.92225 0.90776 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.09 71.98 0.65 -1.31 16 2 C -0.10 -1.25 3.16 -10.79 -0.03 -1.28 16 3 C -0.14 -1.40 9.19 71.98 0.66 -0.74 16 4 C 0.07 0.80 5.32 71.98 0.38 1.18 16 5 O -0.40 -5.97 6.16 -148.98 -0.92 -6.89 16 6 C 0.06 0.72 5.99 71.98 0.43 1.15 16 7 C 0.05 0.61 5.60 86.30 0.48 1.09 16 8 N -0.51 -8.70 5.03 -858.08 -4.31 -13.02 16 9 C 0.07 1.38 4.69 86.65 0.41 1.78 16 10 C -0.14 -3.39 6.78 31.80 0.22 -3.18 16 11 C 0.14 3.40 2.98 45.87 0.14 3.54 16 12 H 0.08 2.33 7.10 -2.39 -0.02 2.31 16 13 N -0.71 -19.00 5.06 -438.37 -2.22 -21.22 16 14 C 0.54 20.34 7.85 87.66 0.69 21.03 16 15 O -0.56 -26.58 15.51 -3.04 -0.05 -26.62 16 16 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 17 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 18 C -0.55 -31.56 9.50 67.95 0.65 -30.92 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 22 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 26 C 0.07 1.20 2.86 45.06 0.13 1.33 16 27 H 0.07 1.13 7.07 -2.39 -0.02 1.11 16 28 C -0.13 -2.15 9.32 71.98 0.67 -1.48 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.80 7.82 -2.39 -0.02 0.78 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.04 0.57 7.82 -2.39 -0.02 0.55 16 41 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 1.02 7.19 -2.38 -0.02 1.01 16 43 H 0.09 1.73 7.05 -2.39 -0.02 1.71 16 44 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.06 1.63 8.05 -2.38 -0.02 1.61 16 46 H 0.41 8.49 8.34 -92.70 -0.77 7.72 16 47 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 48 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 49 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 50 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 52 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -74.59 425.36 0.13 -74.46 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.10 Total: 24.42 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 6.38 Total: -11.36 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -6.25 Total: -90.36 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.96 Total: -33.51 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -74.59 0.13 -74.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692141731.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.928 kcal (2) G-P(sol) polarization free energy of solvation -74.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds