Wall clock time and date at job start Wed Apr 1 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21283 * 120.00280 * 359.97331 * 6 5 4 8 8 C 1.50706 * 120.00115 * 179.97438 * 6 5 4 9 9 O 1.42894 * 109.47209 * 180.02562 * 8 6 5 10 10 C 1.42903 * 114.00076 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.47223 * 179.97438 * 10 9 8 12 12 C 1.32564 * 120.00280 * 135.00315 * 11 10 9 13 13 C 1.47813 * 120.00342 * 179.97438 * 12 11 10 14 14 C 1.39534 * 120.13691 * 359.72229 * 13 12 11 15 15 C 1.37973 * 119.85313 * 179.72136 * 14 13 12 16 16 C 1.38345 * 120.14212 * 0.53125 * 15 14 13 17 17 C 1.38343 * 120.28589 * 359.76815 * 16 15 14 18 18 C 1.37975 * 120.14305 * 359.94941 * 17 16 15 19 19 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 20 20 C 1.54327 * 107.26790 * 358.93814 * 19 5 4 21 21 H 1.09004 * 110.71649 * 219.44279 * 20 19 5 22 22 N 1.46503 * 110.71839 * 96.17284 * 20 19 5 23 23 C 1.36931 * 120.00202 * 91.47458 * 22 20 19 24 24 H 1.08004 * 119.99589 * 0.02562 * 23 22 20 25 25 C 1.38809 * 120.00349 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99947 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00285 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47083 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.46956 * 120.00247 * 27 25 23 30 30 H 1.48497 * 109.47499 * 240.00407 * 27 25 23 31 31 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 32 32 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 33 33 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 34 34 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 35 35 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 36 36 H 1.09005 * 109.46757 * 300.00262 * 8 6 5 37 37 H 1.08998 * 109.46915 * 59.99877 * 8 6 5 38 38 H 1.09001 * 109.47071 * 299.99695 * 10 9 8 39 39 H 1.08997 * 109.47058 * 60.00015 * 10 9 8 40 40 H 1.08005 * 120.00087 * 314.99815 * 11 10 9 41 41 H 1.07997 * 119.99600 * 359.97438 * 12 11 10 42 42 H 1.07996 * 120.07667 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.93418 * 180.27188 * 15 14 13 44 44 H 1.08000 * 119.85678 * 179.74262 * 16 15 14 45 45 H 1.08002 * 119.93085 * 179.97438 * 17 16 15 46 46 H 1.07991 * 120.07606 * 180.02562 * 18 17 16 47 47 H 1.08993 * 109.88066 * 239.51797 * 19 5 4 48 48 H 1.09003 * 109.87770 * 118.35455 * 19 5 4 49 49 H 0.96996 * 119.99702 * 271.47318 * 22 20 19 50 50 H 0.96993 * 120.00128 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3032 -1.4969 -2.7952 8 6 5.7732 -1.9901 -1.0160 9 8 6.6875 -2.2688 -2.0782 10 6 7.9806 -2.6878 -1.6372 11 6 8.8577 -2.9536 -2.8335 12 6 10.1028 -2.4992 -2.8566 13 6 10.9633 -2.7604 -4.0297 14 6 10.4697 -3.4898 -5.1120 15 6 11.2761 -3.7252 -6.2066 16 6 12.5749 -3.2492 -6.2278 17 6 13.0722 -2.5306 -5.1553 18 6 12.2743 -2.2834 -4.0572 19 6 3.4678 -1.2731 0.6969 20 6 2.0861 -0.8075 1.2025 21 1 2.1915 -0.1693 2.0799 22 7 1.2272 -1.9574 1.4964 23 6 1.2060 -2.4917 2.7570 24 1 1.8222 -2.0651 3.5347 25 6 0.3919 -3.5809 3.0356 26 7 -0.3594 -4.1005 2.0879 27 14 0.3635 -4.3103 4.7551 28 1 1.2914 -3.5503 5.6305 29 1 -1.0136 -4.2284 5.3048 30 1 0.7896 -5.7316 4.6970 31 1 -0.3633 0.5029 0.8962 32 1 -0.3633 0.5248 -0.8836 33 1 -0.3633 -1.0275 -0.0125 34 1 1.4531 -1.6706 -1.4022 35 1 2.1567 -0.1721 -2.0834 36 1 6.1747 -1.1920 -0.3915 37 1 5.6319 -2.8871 -0.4130 38 1 8.4275 -1.9040 -1.0256 39 1 7.8855 -3.5994 -1.0472 40 1 8.4719 -3.5143 -3.6721 41 1 10.4885 -1.9382 -2.0182 42 1 9.4575 -3.8658 -5.0948 43 1 10.8941 -4.2859 -7.0468 44 1 13.2035 -3.4397 -7.0851 45 1 14.0872 -2.1620 -5.1777 46 1 12.6634 -1.7220 -3.2207 47 1 4.2425 -0.5984 1.0609 48 1 3.6658 -2.2883 1.0411 49 1 0.6736 -2.3402 0.7980 50 1 -0.9280 -4.8618 2.2825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724939982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:58 Heat of formation + Delta-G solvation = -20.784232 kcal Electronic energy + Delta-G solvation = -28404.515032 eV Core-core repulsion = 24397.504369 eV Total energy + Delta-G solvation = -4007.010662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.89290 -39.50860 -38.26450 -37.17360 -34.81897 -33.97996 -32.46391 -31.30558 -30.79692 -30.52233 -28.52546 -27.73892 -26.15215 -25.05248 -23.86525 -23.23927 -22.22884 -22.11386 -19.83466 -19.31945 -18.98063 -17.69487 -17.56007 -16.93657 -16.44473 -16.28834 -15.80844 -15.47730 -15.23676 -14.86098 -14.68307 -14.43634 -14.07888 -13.74752 -13.65445 -13.51360 -13.28294 -13.16199 -12.97149 -12.76682 -12.56594 -12.22437 -12.04277 -11.93628 -11.64823 -11.57809 -11.39278 -11.15491 -11.12257 -10.98260 -10.81062 -10.59934 -10.49090 -10.27298 -9.97561 -9.85118 -9.72220 -9.54664 -9.27436 -9.06394 -8.43116 -8.28970 -7.12148 -5.88729 -3.19155 0.57679 1.08868 2.11076 2.83850 2.92646 3.35607 3.41350 3.44026 3.60415 3.89257 4.44935 4.46857 4.48146 4.64369 4.68826 4.74471 4.86723 4.98304 5.04544 5.07272 5.11395 5.12646 5.13842 5.22866 5.25225 5.31557 5.35054 5.48527 5.59541 5.63418 5.70395 5.74842 5.89829 5.94285 5.95921 6.08852 6.14351 6.19301 6.22894 6.27725 6.30825 6.33870 6.46596 6.49295 6.56798 6.66518 6.70081 6.91638 6.95596 7.59331 7.82376 8.28782 8.42032 9.40940 9.95422 10.30155 11.33248 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.001679 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.465275 B =16676.738785 C =17664.755998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.115 4.115 3 H 0.078 0.922 4 C 0.117 3.883 5 N -0.607 5.607 6 C 0.527 3.473 7 O -0.535 6.535 8 C 0.050 3.950 9 O -0.360 6.360 10 C 0.088 3.912 11 C -0.129 4.129 12 C -0.116 4.116 13 C -0.052 4.052 14 C -0.114 4.114 15 C -0.118 4.118 16 C -0.123 4.123 17 C -0.121 4.121 18 C -0.111 4.111 19 C 0.067 3.933 20 C 0.173 3.827 21 H 0.074 0.926 22 N -0.711 5.711 23 C -0.248 4.248 24 H 0.073 0.927 25 C -0.008 4.008 26 N -0.928 5.928 27 Si 0.907 3.093 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.055 0.945 48 H 0.077 0.923 49 H 0.387 0.613 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.021 5.483 -9.943 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.136 4.136 3 H 0.096 0.904 4 C -0.005 4.005 5 N -0.342 5.342 6 C 0.315 3.685 7 O -0.412 6.412 8 C -0.030 4.030 9 O -0.278 6.278 10 C 0.012 3.988 11 C -0.147 4.147 12 C -0.135 4.135 13 C -0.052 4.052 14 C -0.132 4.132 15 C -0.136 4.136 16 C -0.141 4.141 17 C -0.139 4.139 18 C -0.129 4.129 19 C -0.059 4.059 20 C 0.060 3.940 21 H 0.092 0.908 22 N -0.352 5.352 23 C -0.379 4.379 24 H 0.091 0.909 25 C -0.205 4.205 26 N -0.575 5.575 27 Si 0.738 3.262 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.219 1.219 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.074 0.926 48 H 0.096 0.904 49 H 0.223 0.777 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 21.959 5.438 -10.636 24.998 hybrid contribution -0.052 -0.747 1.106 1.335 sum 21.907 4.691 -9.530 24.347 Atomic orbital electron populations 1.21543 0.93279 1.03308 1.00720 1.22655 0.97057 0.98452 0.95401 0.90358 1.22261 0.82471 0.98411 0.97366 1.48364 1.11873 1.66170 1.07809 1.19742 0.84450 0.77964 0.86373 1.90697 1.82983 1.52996 1.14477 1.22176 0.89084 1.01460 0.90231 1.88018 1.21238 1.87893 1.30681 1.21494 0.83322 0.99145 0.94842 1.23124 0.93952 0.98911 0.98695 1.21582 0.94342 1.00702 0.96828 1.19036 0.93880 0.98074 0.94249 1.21407 1.00132 0.98332 0.93295 1.21122 0.94212 1.00005 0.98238 1.21228 0.95861 0.98435 0.98604 1.21096 0.99827 0.99076 0.93889 1.21268 0.93190 0.99866 0.98536 1.23368 1.01872 1.02167 0.78514 1.21191 0.88125 0.89890 0.94789 0.90824 1.42451 1.48911 1.32946 1.10846 1.19278 1.20853 1.10022 0.87739 0.90904 1.24758 0.99263 0.98786 0.97665 1.69664 1.30031 1.26092 1.31724 0.86133 0.77314 0.78854 0.83912 1.20506 1.21814 1.21880 0.92215 0.93706 0.90983 0.91163 0.91222 0.90389 0.89971 0.92385 0.91616 0.85881 0.86111 0.85514 0.85878 0.86124 0.85985 0.85836 0.92631 0.90426 0.77733 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.91 37.16 0.33 -1.69 16 2 C -0.12 -1.76 3.51 -88.47 -0.31 -2.07 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.12 1.93 6.33 -2.53 -0.02 1.91 16 5 N -0.61 -10.14 3.33 -170.52 -0.57 -10.70 16 6 C 0.53 9.20 7.93 -10.98 -0.09 9.11 16 7 O -0.53 -11.31 16.75 -14.36 -0.24 -11.55 16 8 C 0.05 0.68 5.61 36.01 0.20 0.88 16 9 O -0.36 -5.22 9.86 -55.14 -0.54 -5.76 16 10 C 0.09 0.91 6.36 36.01 0.23 1.14 16 11 C -0.13 -1.29 9.31 -36.22 -0.34 -1.63 16 12 C -0.12 -1.04 9.51 -37.57 -0.36 -1.40 16 13 C -0.05 -0.49 5.87 -105.01 -0.62 -1.11 16 14 C -0.11 -1.05 9.40 -39.20 -0.37 -1.42 16 15 C -0.12 -0.96 10.03 -39.64 -0.40 -1.36 16 16 C -0.12 -0.92 10.04 -39.50 -0.40 -1.31 16 17 C -0.12 -0.89 10.03 -39.64 -0.40 -1.29 16 18 C -0.11 -0.90 9.79 -39.19 -0.38 -1.28 16 19 C 0.07 1.06 6.23 -3.06 -0.02 1.04 16 20 C 0.17 3.02 3.39 -66.09 -0.22 2.80 16 21 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 22 N -0.71 -15.96 4.48 -51.65 -0.23 -16.19 16 23 C -0.25 -6.28 9.96 -15.06 -0.15 -6.43 16 24 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -26.59 13.06 55.49 0.72 -25.87 16 27 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.31 6.40 -51.93 -0.33 0.98 16 34 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 35 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.49 7.88 -51.93 -0.41 0.08 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.12 1.26 6.04 -52.48 -0.32 0.94 16 41 H 0.12 0.87 7.92 -52.49 -0.42 0.45 16 42 H 0.13 1.08 6.17 -52.49 -0.32 0.76 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 49 H 0.39 9.46 6.27 -40.82 -0.26 9.20 16 50 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 414.30 15.07 6.24 6.24 Total: -1.00 -32.23 414.30 -10.96 -43.19 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -7.92 Total: 8.87 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -3.40 Total: -4.41 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.07 Total: -52.76 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.78 Total: -17.32 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.23 -10.96 -43.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724939982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.402 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds