Wall clock time and date at job start Wed Apr 1 2020 03:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21283 * 120.00280 * 359.97331 * 6 5 4 8 8 C 1.50706 * 120.00115 * 179.97438 * 6 5 4 9 9 O 1.42894 * 109.47209 * 180.02562 * 8 6 5 10 10 C 1.42903 * 114.00076 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.47223 * 179.97438 * 10 9 8 12 12 C 1.32564 * 120.00280 * 135.00315 * 11 10 9 13 13 C 1.47813 * 120.00342 * 179.97438 * 12 11 10 14 14 C 1.39534 * 120.13691 * 359.72229 * 13 12 11 15 15 C 1.37973 * 119.85313 * 179.72136 * 14 13 12 16 16 C 1.38345 * 120.14212 * 0.53125 * 15 14 13 17 17 C 1.38343 * 120.28589 * 359.76815 * 16 15 14 18 18 C 1.37975 * 120.14305 * 359.94941 * 17 16 15 19 19 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 20 20 C 1.54327 * 107.26790 * 358.93814 * 19 5 4 21 21 H 1.09004 * 110.71649 * 219.44279 * 20 19 5 22 22 N 1.46503 * 110.71839 * 96.17284 * 20 19 5 23 23 C 1.36931 * 120.00202 * 91.47458 * 22 20 19 24 24 H 1.08004 * 119.99589 * 0.02562 * 23 22 20 25 25 C 1.38809 * 120.00349 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99947 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00285 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47083 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.46956 * 120.00247 * 27 25 23 30 30 H 1.48497 * 109.47499 * 240.00407 * 27 25 23 31 31 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 32 32 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 33 33 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 34 34 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 35 35 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 36 36 H 1.09005 * 109.46757 * 300.00262 * 8 6 5 37 37 H 1.08998 * 109.46915 * 59.99877 * 8 6 5 38 38 H 1.09001 * 109.47071 * 299.99695 * 10 9 8 39 39 H 1.08997 * 109.47058 * 60.00015 * 10 9 8 40 40 H 1.08005 * 120.00087 * 314.99815 * 11 10 9 41 41 H 1.07997 * 119.99600 * 359.97438 * 12 11 10 42 42 H 1.07996 * 120.07667 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.93418 * 180.27188 * 15 14 13 44 44 H 1.08000 * 119.85678 * 179.74262 * 16 15 14 45 45 H 1.08002 * 119.93085 * 179.97438 * 17 16 15 46 46 H 1.07991 * 120.07606 * 180.02562 * 18 17 16 47 47 H 1.08993 * 109.88066 * 239.51797 * 19 5 4 48 48 H 1.09003 * 109.87770 * 118.35455 * 19 5 4 49 49 H 0.96996 * 119.99702 * 271.47318 * 22 20 19 50 50 H 0.96993 * 120.00128 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3032 -1.4969 -2.7952 8 6 5.7732 -1.9901 -1.0160 9 8 6.6875 -2.2688 -2.0782 10 6 7.9806 -2.6878 -1.6372 11 6 8.8577 -2.9536 -2.8335 12 6 10.1028 -2.4992 -2.8566 13 6 10.9633 -2.7604 -4.0297 14 6 10.4697 -3.4898 -5.1120 15 6 11.2761 -3.7252 -6.2066 16 6 12.5749 -3.2492 -6.2278 17 6 13.0722 -2.5306 -5.1553 18 6 12.2743 -2.2834 -4.0572 19 6 3.4678 -1.2731 0.6969 20 6 2.0861 -0.8075 1.2025 21 1 2.1915 -0.1693 2.0799 22 7 1.2272 -1.9574 1.4964 23 6 1.2060 -2.4917 2.7570 24 1 1.8222 -2.0651 3.5347 25 6 0.3919 -3.5809 3.0356 26 7 -0.3594 -4.1005 2.0879 27 14 0.3635 -4.3103 4.7551 28 1 1.2914 -3.5503 5.6305 29 1 -1.0136 -4.2284 5.3048 30 1 0.7896 -5.7316 4.6970 31 1 -0.3633 0.5029 0.8962 32 1 -0.3633 0.5248 -0.8836 33 1 -0.3633 -1.0275 -0.0125 34 1 1.4531 -1.6706 -1.4022 35 1 2.1567 -0.1721 -2.0834 36 1 6.1747 -1.1920 -0.3915 37 1 5.6319 -2.8871 -0.4130 38 1 8.4275 -1.9040 -1.0256 39 1 7.8855 -3.5994 -1.0472 40 1 8.4719 -3.5143 -3.6721 41 1 10.4885 -1.9382 -2.0182 42 1 9.4575 -3.8658 -5.0948 43 1 10.8941 -4.2859 -7.0468 44 1 13.2035 -3.4397 -7.0851 45 1 14.0872 -2.1620 -5.1777 46 1 12.6634 -1.7220 -3.2207 47 1 4.2425 -0.5984 1.0609 48 1 3.6658 -2.2883 1.0411 49 1 0.6736 -2.3402 0.7980 50 1 -0.9280 -4.8618 2.2825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724939982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:57 Heat of formation + Delta-G solvation = -37.917470 kcal Electronic energy + Delta-G solvation = -28405.257984 eV Core-core repulsion = 24397.504369 eV Total energy + Delta-G solvation = -4007.753615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.21588 -40.12061 -39.41546 -38.41176 -35.69853 -35.53272 -33.96453 -32.26254 -31.89552 -31.46109 -29.63314 -29.24795 -27.10987 -26.10118 -25.70216 -23.86322 -23.50476 -22.85770 -20.72587 -20.66156 -20.10931 -19.39509 -18.46457 -17.96782 -17.57801 -17.39794 -16.84461 -16.51775 -16.32442 -16.11856 -15.76282 -15.63156 -15.40185 -15.00150 -14.61508 -14.46199 -14.39751 -14.23725 -13.92324 -13.90265 -13.60082 -13.35706 -13.21872 -13.18256 -13.01536 -12.86563 -12.79286 -12.36834 -12.31156 -12.06097 -12.00132 -11.95394 -11.75718 -11.44443 -11.38244 -11.31376 -11.03068 -10.84233 -10.71822 -9.87537 -9.67272 -9.08958 -8.99335 -7.90299 -5.18468 -0.07474 0.48727 1.40479 1.50783 1.51461 1.52141 1.60923 1.80345 2.59320 2.87266 3.02186 3.41941 3.42673 3.75191 3.83866 3.85413 3.91284 3.93581 4.09350 4.10475 4.12755 4.16714 4.21614 4.25183 4.38012 4.43494 4.44069 4.52688 4.60360 4.62361 4.66121 4.67419 4.73695 4.89103 4.99031 5.02273 5.04932 5.12615 5.20391 5.25525 5.33339 5.34884 5.44601 5.57119 5.60231 5.61767 5.62704 5.81909 6.04151 6.09614 6.30878 6.51250 7.08664 7.38526 8.13112 8.35343 9.33167 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.001679 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.465275 B =16676.738785 C =17664.755998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 H 0.111 0.889 4 C 0.115 3.885 5 N -0.607 5.607 6 C 0.519 3.481 7 O -0.582 6.582 8 C 0.056 3.944 9 O -0.393 6.393 10 C 0.087 3.913 11 C -0.153 4.153 12 C -0.103 4.103 13 C -0.077 4.077 14 C -0.134 4.134 15 C -0.131 4.131 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.116 4.116 19 C 0.076 3.924 20 C 0.162 3.838 21 H 0.090 0.910 22 N -0.723 5.723 23 C -0.231 4.231 24 H 0.087 0.913 25 C -0.075 4.075 26 N -0.970 5.970 27 Si 0.967 3.033 28 H -0.260 1.260 29 H -0.300 1.300 30 H -0.302 1.302 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.142 0.858 42 H 0.121 0.879 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.098 0.902 48 H 0.060 0.940 49 H 0.374 0.626 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.945 7.462 -8.719 27.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.120 4.120 3 H 0.129 0.871 4 C -0.008 4.008 5 N -0.341 5.341 6 C 0.308 3.692 7 O -0.462 6.462 8 C -0.023 4.023 9 O -0.313 6.313 10 C 0.012 3.988 11 C -0.171 4.171 12 C -0.121 4.121 13 C -0.077 4.077 14 C -0.152 4.152 15 C -0.149 4.149 16 C -0.145 4.145 17 C -0.144 4.144 18 C -0.134 4.134 19 C -0.049 4.049 20 C 0.051 3.949 21 H 0.107 0.893 22 N -0.362 5.362 23 C -0.363 4.363 24 H 0.105 0.895 25 C -0.267 4.267 26 N -0.621 5.621 27 Si 0.797 3.203 28 H -0.184 1.184 29 H -0.228 1.228 30 H -0.230 1.230 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.160 0.840 42 H 0.139 0.861 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.164 0.836 46 H 0.161 0.839 47 H 0.116 0.884 48 H 0.079 0.921 49 H 0.207 0.793 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 24.933 7.465 -9.377 27.665 hybrid contribution -0.854 -1.289 0.618 1.665 sum 24.080 6.176 -8.759 26.357 Atomic orbital electron populations 1.21470 0.93629 1.01395 1.01841 1.22613 0.96654 0.99385 0.93299 0.87090 1.22237 0.82469 0.97738 0.98353 1.48471 1.11712 1.65665 1.08252 1.20548 0.85776 0.76981 0.85889 1.90669 1.83964 1.55026 1.16530 1.22202 0.87095 1.03009 0.89984 1.87982 1.22944 1.88346 1.31984 1.21681 0.81639 1.00353 0.95155 1.23094 0.94693 1.00392 0.98900 1.21784 0.93753 0.99492 0.97075 1.19260 0.94817 0.99027 0.94559 1.21563 1.00353 0.99083 0.94161 1.21378 0.94736 1.00353 0.98387 1.21578 0.95725 0.97731 0.99439 1.21463 1.00910 0.98588 0.93465 1.21569 0.92699 0.99628 0.99473 1.23224 1.01712 1.02186 0.77768 1.21498 0.88262 0.88727 0.96380 0.89259 1.42628 1.49698 1.34233 1.09653 1.19721 1.18903 1.08779 0.88916 0.89544 1.25484 1.00237 1.00233 1.00755 1.69827 1.31803 1.26899 1.33591 0.85165 0.76920 0.77613 0.80595 1.18418 1.22811 1.22984 0.92180 0.91420 0.94402 0.93780 0.90774 0.86913 0.88757 0.90000 0.90584 0.87292 0.84007 0.86063 0.84634 0.83924 0.83552 0.83912 0.88390 0.92119 0.79320 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.91 71.98 0.64 -3.13 16 2 C -0.10 -2.83 3.51 -9.40 -0.03 -2.87 16 3 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 4 C 0.11 3.72 6.33 86.86 0.55 4.27 16 5 N -0.61 -19.47 3.33 -811.78 -2.70 -22.17 16 6 C 0.52 17.71 7.93 87.66 0.69 18.40 16 7 O -0.58 -24.99 16.75 16.00 0.27 -24.72 16 8 C 0.06 1.41 5.61 71.24 0.40 1.81 16 9 O -0.39 -11.10 9.86 -129.94 -1.28 -12.38 16 10 C 0.09 1.67 6.36 71.24 0.45 2.12 16 11 C -0.15 -3.04 9.31 24.53 0.23 -2.81 16 12 C -0.10 -1.74 9.51 23.65 0.22 -1.52 16 13 C -0.08 -1.39 5.87 -20.12 -0.12 -1.51 16 14 C -0.13 -2.53 9.40 22.52 0.21 -2.31 16 15 C -0.13 -2.08 10.03 22.23 0.22 -1.85 16 16 C -0.13 -1.69 10.04 22.32 0.22 -1.47 16 17 C -0.13 -1.61 10.03 22.23 0.22 -1.39 16 18 C -0.12 -1.69 9.79 22.52 0.22 -1.46 16 19 C 0.08 2.21 6.23 86.73 0.54 2.75 16 20 C 0.16 5.30 3.39 46.18 0.16 5.46 16 21 H 0.09 2.70 8.09 -2.39 -0.02 2.69 16 22 N -0.72 -32.20 4.48 -317.32 -1.42 -33.62 16 23 C -0.23 -11.52 9.96 84.03 0.84 -10.68 16 24 H 0.09 4.00 7.83 -2.91 -0.02 3.98 16 25 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 26 N -0.97 -57.28 13.06 21.65 0.28 -57.00 16 27 Si 0.97 43.83 29.55 68.60 2.03 45.86 16 28 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 29 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 30 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.40 6.40 -2.39 -0.02 1.39 16 34 H 0.04 1.65 8.03 -2.39 -0.02 1.64 16 35 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 36 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.08 1.15 7.88 -2.39 -0.02 1.13 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 2.40 6.04 -2.91 -0.02 2.39 16 41 H 0.14 1.69 7.92 -2.91 -0.02 1.67 16 42 H 0.12 2.28 6.17 -2.91 -0.02 2.26 16 43 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 45 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 46 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.06 2.01 8.04 -2.39 -0.02 1.99 16 49 H 0.37 18.73 6.27 -92.71 -0.58 18.14 16 50 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -72.30 414.30 3.66 -68.63 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: 0.35 Total: 35.16 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 6.14 Total: 0.24 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -3.84 Total: -112.79 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -1.01 Total: -37.10 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -72.30 3.66 -68.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724939982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.715 kcal (2) G-P(sol) polarization free energy of solvation -72.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds