Wall clock time and date at job start Wed Apr 1 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.99755 * 2 1 4 4 C 1.54329 * 109.88133 * 238.90418 * 2 1 3 5 5 H 1.09003 * 110.71905 * 336.92753 * 4 2 1 6 6 N 1.46503 * 110.71660 * 100.02429 * 4 2 1 7 7 C 1.36937 * 119.99361 * 204.99716 * 6 4 2 8 8 H 1.07994 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38821 * 119.99576 * 180.02562 * 7 6 4 10 10 N 1.31616 * 119.99631 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99984 * 0.02562 * 9 7 6 12 12 H 1.48493 * 109.47455 * 89.99590 * 11 9 7 13 13 H 1.48503 * 109.46967 * 209.99981 * 11 9 7 14 14 H 1.48508 * 109.46908 * 329.99485 * 11 9 7 15 15 C 1.55152 * 102.94086 * 218.38586 * 4 2 1 16 16 C 1.54690 * 101.67777 * 35.34020 * 15 4 2 17 17 N 1.47021 * 109.88248 * 121.09595 * 2 1 3 18 18 C 1.34769 * 125.64899 * 298.32048 * 17 2 1 19 19 O 1.21282 * 120.00381 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00177 * 180.02562 * 18 17 2 21 21 O 1.42895 * 109.47484 * 179.97438 * 20 18 17 22 22 C 1.42902 * 114.00193 * 179.97438 * 21 20 18 23 23 C 1.50705 * 109.46940 * 179.97438 * 22 21 20 24 24 C 1.32564 * 119.99347 * 135.99742 * 23 22 21 25 25 C 1.47813 * 120.00717 * 8.06979 * 24 23 22 26 26 C 1.39542 * 120.13366 * 35.03832 * 25 24 23 27 27 C 1.37972 * 119.84951 * 179.97438 * 26 25 24 28 28 C 1.38348 * 120.14789 * 0.02562 * 27 26 25 29 29 C 1.38345 * 120.28300 * 359.95645 * 28 27 26 30 30 C 1.37973 * 120.14114 * 0.04447 * 29 28 27 31 31 H 1.09002 * 109.46998 * 300.35351 * 1 2 3 32 32 H 1.08994 * 109.47564 * 60.35877 * 1 2 3 33 33 H 1.09006 * 109.46995 * 180.36189 * 1 2 3 34 34 H 0.96994 * 120.00206 * 25.00423 * 6 4 2 35 35 H 0.97008 * 119.99743 * 179.97438 * 10 9 7 36 36 H 1.09003 * 111.00353 * 153.57692 * 15 4 2 37 37 H 1.08995 * 111.00823 * 277.38643 * 15 4 2 38 38 H 1.09004 * 110.39039 * 204.36261 * 16 15 4 39 39 H 1.09002 * 110.24221 * 82.10668 * 16 15 4 40 40 H 1.09003 * 109.47166 * 59.99519 * 20 18 17 41 41 H 1.08998 * 109.46975 * 299.99884 * 20 18 17 42 42 H 1.08999 * 109.46662 * 60.00291 * 22 21 20 43 43 H 1.08994 * 109.47354 * 300.00025 * 22 21 20 44 44 H 1.07993 * 120.00439 * 315.99729 * 23 22 21 45 45 H 1.08008 * 119.99892 * 188.07219 * 24 23 22 46 46 H 1.07996 * 120.07493 * 359.70361 * 26 25 24 47 47 H 1.08007 * 119.92594 * 179.97438 * 27 26 25 48 48 H 1.07993 * 119.85976 * 179.97438 * 28 27 26 49 49 H 1.07997 * 119.93236 * 180.02562 * 29 28 27 50 50 H 1.08001 * 120.07406 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2428 5 1 1.3039 -1.4437 -1.6201 6 7 2.4554 0.1961 -2.2876 7 6 2.4581 -0.1946 -3.6000 8 1 2.1646 -1.1995 -3.8649 9 6 2.8382 0.7013 -4.5900 10 7 2.8413 0.3257 -5.8514 11 14 3.3465 2.4394 -4.1317 12 1 4.8098 2.4777 -3.8822 13 1 3.0096 3.3633 -5.2444 14 1 2.6239 2.8590 -2.9040 15 6 3.2876 -1.5142 -0.6925 16 6 2.8191 -1.8763 0.7366 17 7 2.0300 -0.7141 1.1839 18 6 1.8086 -0.3613 2.4656 19 8 1.1460 0.6227 2.7180 20 6 2.3853 -1.1888 3.5853 21 8 2.0148 -0.6157 4.8408 22 6 2.5131 -1.3283 5.9748 23 6 2.0650 -0.6392 7.2379 24 6 1.5996 -1.3534 8.2531 25 6 1.6849 -2.8287 8.2196 26 6 2.7801 -3.4537 7.6221 27 6 2.8539 -4.8312 7.5945 28 6 1.8450 -5.5925 8.1572 29 6 0.7568 -4.9789 8.7514 30 6 0.6709 -3.6022 8.7855 31 1 -0.3633 0.5193 0.8868 32 1 -0.3634 0.5082 -0.8931 33 1 -0.3633 -1.0277 0.0065 34 1 2.7187 1.0988 -2.0496 35 1 3.1065 0.9518 -6.5433 36 1 3.4852 -2.4110 -1.2797 37 1 4.1656 -0.8690 -0.6612 38 1 3.6778 -2.0264 1.3912 39 1 2.1971 -2.7711 0.7142 40 1 3.4719 -1.2071 3.5012 41 1 1.9987 -2.2059 3.5217 42 1 3.6024 -1.3502 5.9401 43 1 2.1286 -2.3481 5.9608 44 1 2.1229 0.4364 7.3159 45 1 1.1581 -0.8573 9.1049 46 1 3.5660 -2.8606 7.1783 47 1 3.7009 -5.3162 7.1320 48 1 1.9074 -6.6703 8.1326 49 1 -0.0274 -5.5786 9.1892 50 1 -0.1794 -3.1244 9.2493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734391543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:13 Heat of formation + Delta-G solvation = -8.934052 kcal Electronic energy + Delta-G solvation = -29050.981747 eV Core-core repulsion = 25044.484947 eV Total energy + Delta-G solvation = -4006.496800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.18969 -39.82808 -38.28947 -37.16374 -35.01422 -34.30045 -31.89966 -31.48368 -31.08335 -30.36788 -29.84519 -28.00369 -26.14984 -25.39722 -22.95390 -22.80449 -22.68519 -22.49867 -20.36308 -19.83694 -18.93865 -17.71322 -17.58181 -16.83407 -16.62151 -16.53024 -16.22275 -15.79479 -15.20713 -15.01145 -14.78808 -14.37894 -14.13320 -13.83797 -13.81139 -13.65836 -13.45157 -13.10334 -12.98555 -12.76584 -12.52813 -12.47921 -12.26869 -12.04938 -11.96318 -11.82814 -11.49376 -11.33946 -11.22376 -11.11935 -10.92294 -10.68457 -10.48161 -10.38396 -10.09498 -9.88069 -9.68508 -9.58387 -9.29986 -8.99995 -8.67587 -8.52513 -7.37495 -5.84495 -3.21860 0.56602 0.97720 1.87158 2.66945 2.72140 3.34469 3.38451 3.41634 3.42979 3.76125 4.30770 4.42174 4.47850 4.53212 4.54516 4.68013 4.72436 4.82418 4.88840 4.90059 4.93580 4.99252 5.04498 5.07670 5.10842 5.17223 5.36005 5.37062 5.46464 5.52278 5.55941 5.62138 5.64783 5.78555 5.84472 5.90672 5.94034 5.98227 6.09709 6.16529 6.16931 6.30570 6.32814 6.47195 6.50306 6.55559 6.57575 6.75769 6.82878 7.61870 7.89375 8.25686 8.33874 9.10493 9.83161 10.01359 11.33088 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.001844 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.713040 B =15183.892085 C =15705.640379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.125 3.875 3 H 0.074 0.926 4 C 0.182 3.818 5 H 0.077 0.923 6 N -0.738 5.738 7 C -0.249 4.249 8 H 0.093 0.907 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.155 4.155 16 C 0.096 3.904 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.522 6.522 20 C 0.051 3.949 21 O -0.360 6.360 22 C 0.078 3.922 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.060 4.060 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.120 4.120 30 C -0.107 4.107 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -11.473 30.610 32.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.092 0.908 4 C 0.070 3.930 5 H 0.095 0.905 6 N -0.380 5.380 7 C -0.378 4.378 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.576 5.576 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.196 4.196 16 C -0.028 4.028 17 N -0.347 5.347 18 C 0.315 3.685 19 O -0.397 6.397 20 C -0.029 4.029 21 O -0.278 6.278 22 C 0.002 3.998 23 C -0.148 4.148 24 C -0.135 4.135 25 C -0.060 4.060 26 C -0.135 4.135 27 C -0.139 4.139 28 C -0.138 4.138 29 C -0.138 4.138 30 C -0.125 4.125 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.197 0.803 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.438 -10.858 30.592 32.465 hybrid contribution 0.688 0.956 0.177 1.191 sum 0.249 -9.902 30.769 32.324 Atomic orbital electron populations 1.22056 0.94579 1.01935 1.02811 1.21978 0.94786 0.96678 0.84387 0.90776 1.21225 0.93892 0.91334 0.86527 0.90477 1.42706 1.80850 1.11049 1.03362 1.19030 1.38985 0.99024 0.80791 0.88967 1.24665 1.01223 0.97772 0.95073 1.69695 1.53773 1.35262 0.98916 0.86591 0.78672 0.86012 0.77516 1.21004 1.21607 1.20199 1.23494 1.01020 1.02100 0.93015 1.22403 0.94555 0.88495 0.97304 1.48499 1.52467 1.29099 1.04603 1.19752 0.81163 0.85528 0.82101 1.90714 1.39076 1.26977 1.82947 1.22166 0.99825 0.96750 0.84193 1.88015 1.75399 1.52341 1.12068 1.22032 0.97809 0.95303 0.84650 1.23041 0.98168 1.00680 0.92908 1.21674 1.00264 0.91505 1.00029 1.19131 0.94960 0.93269 0.98636 1.21510 0.97935 0.94904 0.99134 1.21127 0.99084 0.93754 0.99891 1.21249 0.94307 1.00030 0.98181 1.21131 0.98326 0.94682 0.99661 1.21295 0.98185 0.93775 0.99279 0.91898 0.91051 0.92788 0.80346 0.92928 0.89930 0.90725 0.91280 0.91321 0.90387 0.90372 0.92144 0.91253 0.85444 0.85342 0.85590 0.85784 0.86004 0.85896 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.10 37.16 0.34 -2.20 16 2 C 0.13 2.11 3.21 -66.95 -0.21 1.90 16 3 H 0.07 1.39 7.72 -51.93 -0.40 0.99 16 4 C 0.18 3.26 3.15 -66.09 -0.21 3.05 16 5 H 0.08 1.41 7.80 -51.93 -0.40 1.00 16 6 N -0.74 -16.61 5.03 -51.65 -0.26 -16.87 16 7 C -0.25 -6.68 10.44 -15.06 -0.16 -6.83 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 10 N -0.93 -28.39 13.97 55.49 0.78 -27.62 16 11 Si 0.88 21.72 27.74 -169.99 -4.71 17.01 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 15 C -0.16 -2.30 6.76 -24.70 -0.17 -2.47 16 16 C 0.10 1.11 6.68 -2.64 -0.02 1.09 16 17 N -0.61 -8.89 3.07 -163.15 -0.50 -9.40 16 18 C 0.53 8.11 7.72 -10.99 -0.08 8.02 16 19 O -0.52 -10.19 15.54 -14.36 -0.22 -10.42 16 20 C 0.05 0.57 5.43 36.01 0.20 0.76 16 21 O -0.36 -4.64 9.86 -55.14 -0.54 -5.19 16 22 C 0.08 0.70 4.52 36.01 0.16 0.87 16 23 C -0.13 -1.11 9.84 -36.21 -0.36 -1.47 16 24 C -0.12 -0.89 9.81 -37.57 -0.37 -1.25 16 25 C -0.06 -0.47 5.19 -105.01 -0.54 -1.02 16 26 C -0.12 -0.85 7.42 -39.19 -0.29 -1.14 16 27 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 28 C -0.12 -0.77 10.04 -39.50 -0.40 -1.16 16 29 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 30 C -0.11 -0.78 9.79 -39.20 -0.38 -1.16 16 31 H 0.06 1.08 6.89 -51.93 -0.36 0.72 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.36 8.24 5.42 -40.82 -0.22 8.02 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 0.63 7.48 -51.93 -0.39 0.24 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.43 7.52 -51.93 -0.39 0.04 16 43 H 0.07 0.60 5.29 -51.93 -0.27 0.33 16 44 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 46 H 0.13 0.77 5.78 -52.49 -0.30 0.47 16 47 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 48 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 49 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 50 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 405.88 15.07 6.12 6.12 Total: -1.00 -34.10 405.88 -10.55 -44.65 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.81 Total: 6.94 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -3.38 Total: -5.23 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.02 Total: -53.88 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.77 Total: -15.60 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.10 -10.55 -44.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734391543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.716 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds