Wall clock time and date at job start Wed Apr 1 2020 02:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.99755 * 2 1 4 4 C 1.54329 * 109.88133 * 238.90418 * 2 1 3 5 5 H 1.09003 * 110.71905 * 336.92753 * 4 2 1 6 6 N 1.46503 * 110.71660 * 100.02429 * 4 2 1 7 7 C 1.36937 * 119.99361 * 204.99716 * 6 4 2 8 8 H 1.07994 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38821 * 119.99576 * 180.02562 * 7 6 4 10 10 N 1.31616 * 119.99631 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99984 * 0.02562 * 9 7 6 12 12 H 1.48493 * 109.47455 * 89.99590 * 11 9 7 13 13 H 1.48503 * 109.46967 * 209.99981 * 11 9 7 14 14 H 1.48508 * 109.46908 * 329.99485 * 11 9 7 15 15 C 1.55152 * 102.94086 * 218.38586 * 4 2 1 16 16 C 1.54690 * 101.67777 * 35.34020 * 15 4 2 17 17 N 1.47021 * 109.88248 * 121.09595 * 2 1 3 18 18 C 1.34769 * 125.64899 * 298.32048 * 17 2 1 19 19 O 1.21282 * 120.00381 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00177 * 180.02562 * 18 17 2 21 21 O 1.42895 * 109.47484 * 179.97438 * 20 18 17 22 22 C 1.42902 * 114.00193 * 179.97438 * 21 20 18 23 23 C 1.50705 * 109.46940 * 179.97438 * 22 21 20 24 24 C 1.32564 * 119.99347 * 135.99742 * 23 22 21 25 25 C 1.47813 * 120.00717 * 8.06979 * 24 23 22 26 26 C 1.39542 * 120.13366 * 35.03832 * 25 24 23 27 27 C 1.37972 * 119.84951 * 179.97438 * 26 25 24 28 28 C 1.38348 * 120.14789 * 0.02562 * 27 26 25 29 29 C 1.38345 * 120.28300 * 359.95645 * 28 27 26 30 30 C 1.37973 * 120.14114 * 0.04447 * 29 28 27 31 31 H 1.09002 * 109.46998 * 300.35351 * 1 2 3 32 32 H 1.08994 * 109.47564 * 60.35877 * 1 2 3 33 33 H 1.09006 * 109.46995 * 180.36189 * 1 2 3 34 34 H 0.96994 * 120.00206 * 25.00423 * 6 4 2 35 35 H 0.97008 * 119.99743 * 179.97438 * 10 9 7 36 36 H 1.09003 * 111.00353 * 153.57692 * 15 4 2 37 37 H 1.08995 * 111.00823 * 277.38643 * 15 4 2 38 38 H 1.09004 * 110.39039 * 204.36261 * 16 15 4 39 39 H 1.09002 * 110.24221 * 82.10668 * 16 15 4 40 40 H 1.09003 * 109.47166 * 59.99519 * 20 18 17 41 41 H 1.08998 * 109.46975 * 299.99884 * 20 18 17 42 42 H 1.08999 * 109.46662 * 60.00291 * 22 21 20 43 43 H 1.08994 * 109.47354 * 300.00025 * 22 21 20 44 44 H 1.07993 * 120.00439 * 315.99729 * 23 22 21 45 45 H 1.08008 * 119.99892 * 188.07219 * 24 23 22 46 46 H 1.07996 * 120.07493 * 359.70361 * 26 25 24 47 47 H 1.08007 * 119.92594 * 179.97438 * 27 26 25 48 48 H 1.07993 * 119.85976 * 179.97438 * 28 27 26 49 49 H 1.07997 * 119.93236 * 180.02562 * 29 28 27 50 50 H 1.08001 * 120.07406 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2428 5 1 1.3039 -1.4437 -1.6201 6 7 2.4554 0.1961 -2.2876 7 6 2.4581 -0.1946 -3.6000 8 1 2.1646 -1.1995 -3.8649 9 6 2.8382 0.7013 -4.5900 10 7 2.8413 0.3257 -5.8514 11 14 3.3465 2.4394 -4.1317 12 1 4.8098 2.4777 -3.8822 13 1 3.0096 3.3633 -5.2444 14 1 2.6239 2.8590 -2.9040 15 6 3.2876 -1.5142 -0.6925 16 6 2.8191 -1.8763 0.7366 17 7 2.0300 -0.7141 1.1839 18 6 1.8086 -0.3613 2.4656 19 8 1.1460 0.6227 2.7180 20 6 2.3853 -1.1888 3.5853 21 8 2.0148 -0.6157 4.8408 22 6 2.5131 -1.3283 5.9748 23 6 2.0650 -0.6392 7.2379 24 6 1.5996 -1.3534 8.2531 25 6 1.6849 -2.8287 8.2196 26 6 2.7801 -3.4537 7.6221 27 6 2.8539 -4.8312 7.5945 28 6 1.8450 -5.5925 8.1572 29 6 0.7568 -4.9789 8.7514 30 6 0.6709 -3.6022 8.7855 31 1 -0.3633 0.5193 0.8868 32 1 -0.3634 0.5082 -0.8931 33 1 -0.3633 -1.0277 0.0065 34 1 2.7187 1.0988 -2.0496 35 1 3.1065 0.9518 -6.5433 36 1 3.4852 -2.4110 -1.2797 37 1 4.1656 -0.8690 -0.6612 38 1 3.6778 -2.0264 1.3912 39 1 2.1971 -2.7711 0.7142 40 1 3.4719 -1.2071 3.5012 41 1 1.9987 -2.2059 3.5217 42 1 3.6024 -1.3502 5.9401 43 1 2.1286 -2.3481 5.9608 44 1 2.1229 0.4364 7.3159 45 1 1.1581 -0.8573 9.1049 46 1 3.5660 -2.8606 7.1783 47 1 3.7009 -5.3162 7.1320 48 1 1.9074 -6.6703 8.1326 49 1 -0.0274 -5.5786 9.1892 50 1 -0.1794 -3.1244 9.2493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734391543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:12 Heat of formation + Delta-G solvation = -28.677564 kcal Electronic energy + Delta-G solvation = -29051.837890 eV Core-core repulsion = 25044.484947 eV Total energy + Delta-G solvation = -4007.352943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.34383 -40.37565 -39.27815 -38.28273 -36.03595 -35.61220 -33.65407 -32.43508 -31.95345 -31.51550 -30.75209 -28.89773 -26.92585 -26.85452 -24.48478 -23.75078 -23.42309 -23.19769 -21.80699 -20.59421 -20.05706 -19.46657 -18.51336 -17.70593 -17.53243 -17.36200 -17.10668 -16.56362 -16.28212 -16.05269 -15.90773 -15.59465 -15.39863 -14.84963 -14.73814 -14.65173 -14.47040 -14.28234 -14.07761 -13.75108 -13.54458 -13.49745 -13.34926 -13.30738 -13.13342 -13.00049 -12.67804 -12.55411 -12.52400 -12.25290 -12.01528 -11.93798 -11.82276 -11.67461 -11.55151 -11.12139 -10.98622 -10.79973 -10.52353 -9.78635 -9.72028 -9.32784 -9.20384 -8.02467 -5.36220 0.04579 0.50435 1.28113 1.38409 1.39376 1.46091 1.54133 1.71452 2.47196 2.86775 2.99811 3.27111 3.46144 3.53426 3.72232 3.78983 3.93898 3.97946 4.08552 4.10458 4.12449 4.19168 4.21773 4.27007 4.33646 4.34874 4.37738 4.40737 4.46464 4.59943 4.61901 4.64489 4.73415 4.82635 4.89722 5.00673 5.05965 5.16411 5.19972 5.23575 5.29286 5.39651 5.41022 5.42798 5.63388 5.65550 5.76786 5.77885 6.06307 6.11956 6.21159 6.51227 7.05076 7.11410 7.80635 7.98147 9.18250 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.001844 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.713040 B =15183.892085 C =15705.640379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.130 3.870 3 H 0.052 0.948 4 C 0.173 3.827 5 H 0.074 0.926 6 N -0.744 5.744 7 C -0.224 4.224 8 H 0.068 0.932 9 C -0.058 4.058 10 N -0.979 5.979 11 Si 0.945 3.055 12 H -0.278 1.278 13 H -0.298 1.298 14 H -0.261 1.261 15 C -0.149 4.149 16 C 0.102 3.898 17 N -0.608 5.608 18 C 0.521 3.479 19 O -0.574 6.574 20 C 0.056 3.944 21 O -0.395 6.395 22 C 0.079 3.921 23 C -0.151 4.151 24 C -0.108 4.108 25 C -0.080 4.080 26 C -0.125 4.125 27 C -0.128 4.128 28 C -0.126 4.126 29 C -0.129 4.129 30 C -0.121 4.121 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.363 0.637 35 H 0.257 0.743 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.143 0.857 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 -13.227 33.153 35.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.025 3.975 3 H 0.070 0.930 4 C 0.064 3.936 5 H 0.092 0.908 6 N -0.386 5.386 7 C -0.354 4.354 8 H 0.086 0.914 9 C -0.250 4.250 10 N -0.629 5.629 11 Si 0.773 3.227 12 H -0.204 1.204 13 H -0.225 1.225 14 H -0.186 1.186 15 C -0.189 4.189 16 C -0.020 4.020 17 N -0.344 5.344 18 C 0.310 3.690 19 O -0.453 6.453 20 C -0.023 4.023 21 O -0.314 6.314 22 C 0.004 3.996 23 C -0.169 4.169 24 C -0.126 4.126 25 C -0.080 4.080 26 C -0.143 4.143 27 C -0.146 4.146 28 C -0.144 4.144 29 C -0.147 4.147 30 C -0.139 4.139 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.196 0.804 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.141 0.859 45 H 0.158 0.842 46 H 0.153 0.847 47 H 0.161 0.839 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.614 -12.661 33.204 35.542 hybrid contribution 0.302 1.366 -0.519 1.493 sum 0.916 -11.295 32.685 34.594 Atomic orbital electron populations 1.21965 0.94405 1.02533 1.01684 1.21689 0.94881 0.95713 0.85191 0.93028 1.21424 0.95494 0.90845 0.85864 0.90803 1.42711 1.81224 1.11935 1.02779 1.19002 1.36165 0.97682 0.82599 0.91393 1.25370 1.02759 1.01806 0.95041 1.69852 1.56382 1.36594 1.00075 0.85560 0.78542 0.81211 0.77341 1.20417 1.22464 1.18567 1.23332 0.98798 1.01563 0.95210 1.22596 0.95995 0.87893 0.95514 1.48532 1.52380 1.29525 1.03916 1.20620 0.80297 0.85207 0.82859 1.90691 1.41499 1.29430 1.83702 1.22244 1.01336 0.96587 0.82129 1.87974 1.76352 1.53806 1.13308 1.22169 0.98941 0.95027 0.83426 1.23079 0.99772 1.00660 0.93420 1.21840 0.99026 0.91681 1.00049 1.19301 0.95736 0.93363 0.99593 1.21695 0.98011 0.95464 0.99111 1.21420 0.99728 0.93637 0.99765 1.21572 0.94074 1.01152 0.97623 1.21412 0.98997 0.94665 0.99653 1.21518 0.98519 0.94345 0.99480 0.93080 0.92064 0.91293 0.80401 0.93385 0.89233 0.91588 0.87349 0.88687 0.87202 0.87466 0.90134 0.90741 0.85907 0.84213 0.84674 0.83924 0.84197 0.84301 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 9.10 71.98 0.66 -4.10 16 2 C 0.13 4.26 3.21 45.34 0.15 4.40 16 3 H 0.05 1.93 7.72 -2.39 -0.02 1.91 16 4 C 0.17 6.00 3.15 46.18 0.15 6.15 16 5 H 0.07 2.62 7.80 -2.39 -0.02 2.60 16 6 N -0.74 -33.14 5.03 -317.31 -1.60 -34.74 16 7 C -0.22 -12.10 10.44 84.04 0.88 -11.22 16 8 H 0.07 3.96 8.06 -2.91 -0.02 3.93 16 9 C -0.06 -3.32 5.50 84.86 0.47 -2.86 16 10 N -0.98 -61.23 13.97 21.65 0.30 -60.92 16 11 Si 0.95 45.33 27.74 68.60 1.90 47.23 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 14 H -0.26 -11.65 6.52 99.48 0.65 -11.00 16 15 C -0.15 -4.01 6.76 31.91 0.22 -3.79 16 16 C 0.10 1.92 6.68 86.78 0.58 2.50 16 17 N -0.61 -16.19 3.07 -788.47 -2.42 -18.61 16 18 C 0.52 14.95 7.72 87.66 0.68 15.63 16 19 O -0.57 -22.34 15.54 16.00 0.25 -22.09 16 20 C 0.06 1.06 5.43 71.24 0.39 1.45 16 21 O -0.39 -9.42 9.86 -129.94 -1.28 -10.70 16 22 C 0.08 1.26 4.52 71.24 0.32 1.58 16 23 C -0.15 -2.44 9.84 24.54 0.24 -2.20 16 24 C -0.11 -1.52 9.81 23.65 0.23 -1.29 16 25 C -0.08 -1.14 5.19 -20.12 -0.10 -1.25 16 26 C -0.13 -1.55 7.42 22.52 0.17 -1.38 16 27 C -0.13 -1.35 10.03 22.23 0.22 -1.13 16 28 C -0.13 -1.32 10.04 22.32 0.22 -1.09 16 29 C -0.13 -1.46 10.03 22.23 0.22 -1.24 16 30 C -0.12 -1.59 9.79 22.52 0.22 -1.37 16 31 H 0.05 1.76 6.89 -2.39 -0.02 1.75 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.36 16.18 5.42 -92.71 -0.50 15.68 16 35 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 36 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.11 1.31 7.48 -2.38 -0.02 1.29 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.11 1.38 7.84 -2.39 -0.02 1.36 16 41 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 42 H 0.08 0.91 7.52 -2.39 -0.02 0.89 16 43 H 0.07 1.09 5.29 -2.39 -0.01 1.08 16 44 H 0.12 2.02 8.06 -2.91 -0.02 1.99 16 45 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 46 H 0.14 1.31 5.78 -2.91 -0.02 1.30 16 47 H 0.14 0.88 8.06 -2.91 -0.02 0.86 16 48 H 0.14 0.86 8.06 -2.91 -0.02 0.84 16 49 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 50 H 0.13 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -76.68 405.88 3.43 -73.25 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.37 Total: 27.81 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.90 Total: -1.22 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -3.71 Total: -114.27 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.03 Total: -32.80 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Total: -76.68 3.43 -73.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734391543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.570 kcal (2) G-P(sol) polarization free energy of solvation -76.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds