Wall clock time and date at job start Wed Apr 1 2020 02:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46611 * 2 1 4 4 C 1.53007 * 109.47138 * 119.99464 * 2 1 3 5 5 N 1.46500 * 109.46992 * 175.00340 * 4 2 1 6 6 C 1.34770 * 120.00149 * 179.97438 * 5 4 2 7 7 O 1.21722 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.46250 * 120.00046 * 179.97438 * 6 5 4 9 9 C 1.35031 * 119.99722 * 180.02562 * 8 6 5 10 10 C 1.46959 * 119.99896 * 180.27394 * 9 8 6 11 11 C 1.40027 * 120.10017 * 359.45143 * 10 9 8 12 12 C 1.37601 * 119.89863 * 179.78912 * 11 10 9 13 13 C 1.39178 * 120.09610 * 0.48118 * 12 11 10 14 14 O 1.35575 * 119.89259 * 179.76441 * 13 12 11 15 15 C 1.34788 * 116.99533 * 174.42515 * 14 13 12 16 16 H 1.08001 * 120.00124 * 5.05799 * 15 14 13 17 17 C 1.38720 * 119.99795 * 185.06035 * 15 14 13 18 18 N 1.31507 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99984 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47306 * 119.99699 * 19 17 15 22 22 H 1.48503 * 109.47196 * 239.99770 * 19 17 15 23 23 C 1.39170 * 120.20621 * 359.74800 * 13 12 11 24 24 C 1.37600 * 120.10262 * 0.02562 * 23 13 12 25 25 N 1.46897 * 109.47180 * 239.99736 * 2 1 3 26 26 C 1.46896 * 111.00180 * 306.04525 * 25 2 1 27 27 C 1.46905 * 111.00145 * 69.99959 * 25 2 1 28 28 C 1.52994 * 117.49876 * 243.74679 * 27 25 2 29 29 C 1.52996 * 117.50120 * 175.08539 * 27 25 2 30 30 H 1.08994 * 109.47426 * 60.00223 * 1 2 3 31 31 H 1.09006 * 109.46786 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46990 * 300.00245 * 1 2 3 33 33 H 1.08994 * 109.46464 * 55.00268 * 4 2 1 34 34 H 1.09003 * 109.46757 * 295.00243 * 4 2 1 35 35 H 0.96999 * 119.99522 * 359.97438 * 5 4 2 36 36 H 1.07990 * 120.00180 * 359.97438 * 8 6 5 37 37 H 1.08000 * 120.00105 * 359.97438 * 9 8 6 38 38 H 1.08005 * 120.04944 * 359.97438 * 11 10 9 39 39 H 1.07995 * 119.95289 * 180.22906 * 12 11 10 40 40 H 0.97004 * 119.99419 * 180.02562 * 18 17 15 41 41 H 1.07998 * 119.95118 * 179.97438 * 23 13 12 42 42 H 1.07997 * 120.05056 * 180.02562 * 24 23 13 43 43 H 1.08997 * 109.47296 * 59.99741 * 26 25 2 44 44 H 1.08995 * 109.47255 * 180.02562 * 26 25 2 45 45 H 1.09003 * 109.46818 * 300.00014 * 26 25 2 46 46 H 1.09003 * 115.54517 * 29.41149 * 27 25 2 47 47 H 1.08998 * 117.49792 * 359.97438 * 28 27 25 48 48 H 1.09003 * 117.50025 * 145.01443 * 28 27 25 49 49 H 1.08997 * 117.49752 * 214.98027 * 29 27 25 50 50 H 1.09008 * 117.49749 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5001 -0.8262 1.1907 6 6 4.1732 -1.4279 2.1913 7 8 3.5679 -1.8846 3.1435 8 6 5.6307 -1.5333 2.1324 9 6 6.3049 -2.1367 3.1348 10 6 7.7700 -2.2372 3.0786 11 6 8.4680 -1.7182 1.9811 12 6 9.8401 -1.8108 1.9348 13 6 10.5333 -2.4280 2.9719 14 8 11.8849 -2.5211 2.9197 15 6 12.5058 -3.0248 4.0049 16 1 11.9244 -3.4081 4.8304 17 6 13.8916 -3.0509 4.0614 18 7 14.5995 -2.5846 3.0559 19 14 14.7521 -3.7483 5.5655 20 1 13.7374 -4.2039 6.5494 21 1 15.6015 -4.8975 5.1615 22 1 15.6014 -2.6974 6.1816 23 6 9.8435 -2.9495 4.0623 24 6 8.4718 -2.8574 4.1194 25 7 2.0197 -0.6925 -1.1994 26 6 1.4344 -2.0355 -1.3077 27 6 1.7529 0.0971 -2.4091 28 6 0.8026 -0.5013 -3.4480 29 6 2.3047 -0.4323 -3.7343 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7196 1.2952 34 1 1.7516 -0.1581 2.1370 35 1 3.9823 -0.4626 0.4317 36 1 6.1676 -1.1293 1.2870 37 1 5.7680 -2.5411 3.9801 38 1 7.9303 -1.2434 1.1737 39 1 10.3795 -1.4075 1.0906 40 1 15.5685 -2.6032 3.0953 41 1 10.3856 -3.4279 4.8646 42 1 7.9374 -3.2620 4.9662 43 1 0.3491 -1.9550 -1.3692 44 1 1.8141 -2.5261 -2.2039 45 1 1.7060 -2.6221 -0.4300 46 1 1.7299 1.1779 -2.2693 47 1 0.3756 -1.4811 -3.2342 48 1 0.1545 0.1858 -3.9921 49 1 2.6443 0.3002 -4.4665 50 1 2.8660 -1.3663 -3.7085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057714022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:43 Heat of formation + Delta-G solvation = 12.812580 kcal Electronic energy + Delta-G solvation = -28273.751112 eV Core-core repulsion = 24268.197317 eV Total energy + Delta-G solvation = -4005.553795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.11848 -39.27560 -38.96398 -36.87853 -36.11150 -33.59956 -33.13998 -32.25281 -30.58627 -30.39064 -28.44604 -27.03531 -26.59717 -25.55953 -23.06946 -22.73886 -22.12132 -21.72692 -20.62144 -19.96555 -19.15437 -18.10248 -17.45405 -17.10184 -16.93941 -16.25819 -15.50357 -15.32364 -14.90356 -14.79736 -14.73884 -14.38818 -14.00507 -13.96724 -13.78640 -13.45287 -13.31427 -13.04254 -12.97459 -12.70339 -12.55030 -12.46292 -12.27721 -11.96945 -11.90068 -11.72951 -11.70828 -11.66368 -11.27447 -11.12759 -11.12453 -11.02664 -10.69647 -10.62653 -10.50884 -9.71285 -9.55799 -9.46174 -9.01665 -8.80649 -8.57566 -8.34575 -7.07125 -6.62633 -4.17540 1.13865 2.16858 2.61590 3.05286 3.06520 3.11488 3.12122 3.37016 3.61240 3.67866 3.84400 4.29893 4.45341 4.48186 4.54729 4.57154 4.70016 4.81041 4.84070 4.95249 5.06535 5.08446 5.12352 5.19565 5.22295 5.26641 5.32719 5.39336 5.42018 5.54071 5.57535 5.58509 5.65117 5.70153 5.71675 5.72494 5.76864 6.05084 6.16439 6.43704 6.51009 6.54781 6.58671 6.63941 6.68153 6.83229 6.95800 7.16926 7.27378 7.32336 7.67562 7.71827 7.83041 8.46044 8.82465 9.49950 10.54222 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.001588 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.778183 B =17631.658943 C =18639.232460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.068 3.932 3 H 0.091 0.909 4 C 0.131 3.869 5 N -0.721 5.721 6 C 0.553 3.447 7 O -0.566 6.566 8 C -0.277 4.277 9 C 0.034 3.966 10 C -0.196 4.196 11 C -0.043 4.043 12 C -0.199 4.199 13 C 0.166 3.834 14 O -0.164 6.164 15 C -0.393 4.393 16 H 0.098 0.902 17 C 0.041 3.959 18 N -0.853 5.853 19 Si 0.945 3.055 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.242 4.242 24 C -0.036 4.036 25 N -0.501 5.501 26 C 0.013 3.987 27 C 0.022 3.978 28 C -0.220 4.220 29 C -0.170 4.170 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.407 0.593 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.273 0.727 41 H 0.131 0.869 42 H 0.113 0.887 43 H 0.038 0.962 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.117 0.883 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.430 5.194 -9.524 27.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.040 4.040 3 H 0.109 0.891 4 C 0.006 3.994 5 N -0.373 5.373 6 C 0.345 3.655 7 O -0.447 6.447 8 C -0.298 4.298 9 C 0.014 3.986 10 C -0.197 4.197 11 C -0.062 4.062 12 C -0.219 4.219 13 C 0.110 3.890 14 O -0.065 6.065 15 C -0.468 4.468 16 H 0.115 0.885 17 C -0.165 4.165 18 N -0.486 5.486 19 Si 0.769 3.231 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.261 4.261 24 C -0.055 4.055 25 N -0.222 5.222 26 C -0.135 4.135 27 C -0.087 4.087 28 C -0.259 4.259 29 C -0.207 4.207 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.242 0.758 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.083 0.917 41 H 0.148 0.852 42 H 0.132 0.868 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.135 0.865 47 H 0.117 0.883 48 H 0.110 0.890 49 H 0.115 0.885 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.889 4.905 -9.031 26.927 hybrid contribution -0.221 -0.099 0.152 0.286 sum -25.110 4.806 -8.878 27.064 Atomic orbital electron populations 1.22388 0.96103 1.02831 1.02790 1.22039 0.93728 0.98602 0.89667 0.89107 1.21290 0.81370 1.00510 0.96203 1.45680 1.06802 1.60737 1.24039 1.18413 0.88361 0.77045 0.81660 1.90765 1.70736 1.49321 1.33872 1.22454 0.92185 1.11895 1.03309 1.22269 0.92394 0.88577 0.95380 1.18476 0.91657 1.11095 0.98502 1.20893 0.92933 0.96125 0.96203 1.20155 0.93532 1.07782 1.00394 1.19613 0.84792 0.91521 0.93044 1.83908 1.13583 1.69734 1.39278 1.21520 0.89753 1.40005 0.95552 0.88513 1.25388 0.95396 0.96734 0.98980 1.70026 1.07075 1.41315 1.30157 0.85586 0.79376 0.78643 0.79519 1.18875 1.19949 1.19939 1.21099 0.94284 1.09328 1.01419 1.20987 0.93551 0.94711 0.96215 1.62016 1.56963 1.02479 1.00781 1.22580 0.97635 0.90170 1.03088 1.22624 1.02875 0.97034 0.86169 1.23561 0.93638 1.03529 1.05134 1.23079 0.95697 1.03649 0.98312 0.91901 0.91820 0.91583 0.91779 0.91240 0.75765 0.85915 0.86023 0.86363 0.86148 0.91697 0.85150 0.86849 0.94385 0.91238 0.90806 0.86514 0.88288 0.88998 0.88467 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.98 8.48 37.16 0.32 -0.66 16 2 C 0.07 0.44 2.44 -67.71 -0.17 0.28 16 3 H 0.09 0.55 7.96 -51.93 -0.41 0.14 16 4 C 0.13 1.18 4.84 -4.04 -0.02 1.17 16 5 N -0.72 -7.69 5.38 -61.76 -0.33 -8.03 16 6 C 0.55 7.93 7.74 -13.04 -0.10 7.83 16 7 O -0.57 -10.05 16.23 5.17 0.08 -9.96 16 8 C -0.28 -3.91 9.41 -37.50 -0.35 -4.26 16 9 C 0.03 0.52 9.45 -37.19 -0.35 0.17 16 10 C -0.20 -3.41 5.87 -105.03 -0.62 -4.03 16 11 C -0.04 -0.75 9.40 -39.14 -0.37 -1.12 16 12 C -0.20 -4.04 9.97 -39.47 -0.39 -4.43 16 13 C 0.17 3.87 6.66 -38.89 -0.26 3.61 16 14 O -0.16 -4.49 9.74 0.70 0.01 -4.48 16 15 C -0.39 -10.52 9.48 30.91 0.29 -10.23 16 16 H 0.10 2.39 5.18 -52.49 -0.27 2.12 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.85 -24.02 13.67 55.48 0.76 -23.26 16 19 Si 0.94 19.68 29.55 -169.99 -5.02 14.66 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.24 -5.08 9.14 -39.47 -0.36 -5.44 16 24 C -0.04 -0.66 9.78 -39.15 -0.38 -1.04 16 25 N -0.50 -3.42 4.36 -226.91 -0.99 -4.41 16 26 C 0.01 0.09 7.41 60.06 0.45 0.53 16 27 C 0.02 0.13 5.20 -67.72 -0.35 -0.22 16 28 C -0.22 -1.20 9.51 -26.70 -0.25 -1.46 16 29 C -0.17 -1.02 9.99 -26.70 -0.27 -1.29 16 30 H 0.06 0.32 7.52 -51.93 -0.39 -0.07 16 31 H 0.06 0.36 6.33 -51.93 -0.33 0.03 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.64 6.80 -51.93 -0.35 0.29 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.41 3.75 8.12 -40.82 -0.33 3.42 16 36 H 0.12 1.51 6.06 -52.49 -0.32 1.19 16 37 H 0.12 1.89 7.52 -52.49 -0.39 1.50 16 38 H 0.12 1.69 6.16 -52.48 -0.32 1.36 16 39 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.13 2.71 5.62 -52.49 -0.29 2.41 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.04 0.23 5.31 -51.93 -0.28 -0.05 16 44 H 0.07 0.47 6.63 -51.93 -0.34 0.12 16 45 H 0.07 0.59 6.58 -51.93 -0.34 0.25 16 46 H 0.12 0.63 7.93 -51.93 -0.41 0.22 16 47 H 0.10 0.56 5.90 -51.93 -0.31 0.25 16 48 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.10 0.66 7.56 -51.92 -0.39 0.27 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -30.80 404.69 -9.85 -40.65 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.16 Total: 8.33 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -3.29 Total: -19.60 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.56 Total: -35.70 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.09 Total: -14.44 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.80 -9.85 -40.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057714022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.459 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds