Wall clock time and date at job start Wed Apr 1 2020 02:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46611 * 2 1 4 4 C 1.53007 * 109.47138 * 119.99464 * 2 1 3 5 5 N 1.46500 * 109.46992 * 175.00340 * 4 2 1 6 6 C 1.34770 * 120.00149 * 179.97438 * 5 4 2 7 7 O 1.21722 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.46250 * 120.00046 * 179.97438 * 6 5 4 9 9 C 1.35031 * 119.99722 * 180.02562 * 8 6 5 10 10 C 1.46959 * 119.99896 * 180.27394 * 9 8 6 11 11 C 1.40027 * 120.10017 * 359.45143 * 10 9 8 12 12 C 1.37601 * 119.89863 * 179.78912 * 11 10 9 13 13 C 1.39178 * 120.09610 * 0.48118 * 12 11 10 14 14 O 1.35575 * 119.89259 * 179.76441 * 13 12 11 15 15 C 1.34788 * 116.99533 * 174.42515 * 14 13 12 16 16 H 1.08001 * 120.00124 * 5.05799 * 15 14 13 17 17 C 1.38720 * 119.99795 * 185.06035 * 15 14 13 18 18 N 1.31507 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99984 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47306 * 119.99699 * 19 17 15 22 22 H 1.48503 * 109.47196 * 239.99770 * 19 17 15 23 23 C 1.39170 * 120.20621 * 359.74800 * 13 12 11 24 24 C 1.37600 * 120.10262 * 0.02562 * 23 13 12 25 25 N 1.46897 * 109.47180 * 239.99736 * 2 1 3 26 26 C 1.46896 * 111.00180 * 306.04525 * 25 2 1 27 27 C 1.46905 * 111.00145 * 69.99959 * 25 2 1 28 28 C 1.52994 * 117.49876 * 243.74679 * 27 25 2 29 29 C 1.52996 * 117.50120 * 175.08539 * 27 25 2 30 30 H 1.08994 * 109.47426 * 60.00223 * 1 2 3 31 31 H 1.09006 * 109.46786 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46990 * 300.00245 * 1 2 3 33 33 H 1.08994 * 109.46464 * 55.00268 * 4 2 1 34 34 H 1.09003 * 109.46757 * 295.00243 * 4 2 1 35 35 H 0.96999 * 119.99522 * 359.97438 * 5 4 2 36 36 H 1.07990 * 120.00180 * 359.97438 * 8 6 5 37 37 H 1.08000 * 120.00105 * 359.97438 * 9 8 6 38 38 H 1.08005 * 120.04944 * 359.97438 * 11 10 9 39 39 H 1.07995 * 119.95289 * 180.22906 * 12 11 10 40 40 H 0.97004 * 119.99419 * 180.02562 * 18 17 15 41 41 H 1.07998 * 119.95118 * 179.97438 * 23 13 12 42 42 H 1.07997 * 120.05056 * 180.02562 * 24 23 13 43 43 H 1.08997 * 109.47296 * 59.99741 * 26 25 2 44 44 H 1.08995 * 109.47255 * 180.02562 * 26 25 2 45 45 H 1.09003 * 109.46818 * 300.00014 * 26 25 2 46 46 H 1.09003 * 115.54517 * 29.41149 * 27 25 2 47 47 H 1.08998 * 117.49792 * 359.97438 * 28 27 25 48 48 H 1.09003 * 117.50025 * 145.01443 * 28 27 25 49 49 H 1.08997 * 117.49752 * 214.98027 * 29 27 25 50 50 H 1.09008 * 117.49749 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5001 -0.8262 1.1907 6 6 4.1732 -1.4279 2.1913 7 8 3.5679 -1.8846 3.1435 8 6 5.6307 -1.5333 2.1324 9 6 6.3049 -2.1367 3.1348 10 6 7.7700 -2.2372 3.0786 11 6 8.4680 -1.7182 1.9811 12 6 9.8401 -1.8108 1.9348 13 6 10.5333 -2.4280 2.9719 14 8 11.8849 -2.5211 2.9197 15 6 12.5058 -3.0248 4.0049 16 1 11.9244 -3.4081 4.8304 17 6 13.8916 -3.0509 4.0614 18 7 14.5995 -2.5846 3.0559 19 14 14.7521 -3.7483 5.5655 20 1 13.7374 -4.2039 6.5494 21 1 15.6015 -4.8975 5.1615 22 1 15.6014 -2.6974 6.1816 23 6 9.8435 -2.9495 4.0623 24 6 8.4718 -2.8574 4.1194 25 7 2.0197 -0.6925 -1.1994 26 6 1.4344 -2.0355 -1.3077 27 6 1.7529 0.0971 -2.4091 28 6 0.8026 -0.5013 -3.4480 29 6 2.3047 -0.4323 -3.7343 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7196 1.2952 34 1 1.7516 -0.1581 2.1370 35 1 3.9823 -0.4626 0.4317 36 1 6.1676 -1.1293 1.2870 37 1 5.7680 -2.5411 3.9801 38 1 7.9303 -1.2434 1.1737 39 1 10.3795 -1.4075 1.0906 40 1 15.5685 -2.6032 3.0953 41 1 10.3856 -3.4279 4.8646 42 1 7.9374 -3.2620 4.9662 43 1 0.3491 -1.9550 -1.3692 44 1 1.8141 -2.5261 -2.2039 45 1 1.7060 -2.6221 -0.4300 46 1 1.7299 1.1779 -2.2693 47 1 0.3756 -1.4811 -3.2342 48 1 0.1545 0.1858 -3.9921 49 1 2.6443 0.3002 -4.4665 50 1 2.8660 -1.3663 -3.7085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057714022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:42 Heat of formation + Delta-G solvation = -6.272465 kcal Electronic energy + Delta-G solvation = -28274.578702 eV Core-core repulsion = 24268.197317 eV Total energy + Delta-G solvation = -4006.381385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.97444 -40.74619 -39.98003 -38.48077 -36.80393 -34.71140 -34.47088 -33.94668 -31.95474 -31.16836 -29.81329 -27.73232 -27.54687 -27.16905 -24.39421 -23.64627 -23.17322 -22.37886 -21.95562 -20.71395 -20.32566 -19.65727 -18.83151 -18.14694 -17.97462 -17.17866 -16.44633 -16.41492 -16.12681 -15.96651 -15.90744 -15.64859 -15.58832 -15.22962 -14.74836 -14.62834 -14.57626 -14.10293 -13.96789 -13.75512 -13.59068 -13.31094 -13.23091 -13.12179 -12.93364 -12.86627 -12.71966 -12.55093 -12.48079 -12.18595 -12.16975 -12.09942 -11.81970 -11.59113 -11.19973 -11.15494 -11.10488 -10.92812 -10.56452 -9.96700 -9.87871 -9.08294 -8.65654 -8.51520 -6.17575 -0.21243 0.59742 1.16478 1.36367 1.45897 1.54317 2.15837 2.33811 2.43053 2.70922 2.87748 3.12871 3.19276 3.43710 3.73462 3.86617 3.95960 3.98623 4.03284 4.10283 4.12618 4.20122 4.29600 4.31819 4.33498 4.39533 4.49665 4.57736 4.62133 4.66999 4.72783 4.80239 4.82606 4.92416 4.96236 5.01365 5.04866 5.08099 5.15874 5.21138 5.26609 5.28610 5.32010 5.35908 5.55294 5.61574 5.65264 5.83955 5.98452 6.04535 6.12002 6.13014 6.71875 6.93014 7.37244 7.70434 8.70817 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.001588 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.778183 B =17631.658943 C =18639.232460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.101 0.899 4 C 0.130 3.870 5 N -0.702 5.702 6 C 0.547 3.453 7 O -0.600 6.600 8 C -0.242 4.242 9 C 0.012 3.988 10 C -0.169 4.169 11 C -0.038 4.038 12 C -0.207 4.207 13 C 0.129 3.871 14 O -0.220 6.220 15 C -0.416 4.416 16 H 0.106 0.894 17 C -0.019 4.019 18 N -0.914 5.914 19 Si 1.019 2.981 20 H -0.251 1.251 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.249 4.249 24 C -0.041 4.041 25 N -0.509 5.509 26 C 0.016 3.984 27 C 0.020 3.980 28 C -0.213 4.213 29 C -0.176 4.176 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.417 0.583 36 H 0.149 0.851 37 H 0.124 0.876 38 H 0.159 0.841 39 H 0.123 0.877 40 H 0.275 0.725 41 H 0.124 0.876 42 H 0.144 0.856 43 H 0.046 0.954 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.127 0.873 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.969 6.079 -9.929 31.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.032 4.032 3 H 0.119 0.881 4 C 0.005 3.995 5 N -0.352 5.352 6 C 0.338 3.662 7 O -0.484 6.484 8 C -0.263 4.263 9 C -0.008 4.008 10 C -0.170 4.170 11 C -0.056 4.056 12 C -0.226 4.226 13 C 0.077 3.923 14 O -0.125 6.125 15 C -0.492 4.492 16 H 0.123 0.877 17 C -0.218 4.218 18 N -0.551 5.551 19 Si 0.838 3.162 20 H -0.174 1.174 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.268 4.268 24 C -0.059 4.059 25 N -0.231 5.231 26 C -0.131 4.131 27 C -0.089 4.089 28 C -0.252 4.252 29 C -0.214 4.214 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.255 0.745 36 H 0.166 0.834 37 H 0.142 0.858 38 H 0.176 0.824 39 H 0.141 0.859 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.162 0.838 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.145 0.855 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -28.515 5.812 -9.472 30.604 hybrid contribution 0.230 -0.255 0.099 0.357 sum -28.285 5.557 -9.373 30.311 Atomic orbital electron populations 1.22337 0.95088 1.02775 1.03417 1.21961 0.94401 0.98491 0.88319 0.88068 1.21404 0.80075 1.00383 0.97613 1.45608 1.07684 1.58818 1.23138 1.18512 0.88522 0.77241 0.81907 1.90767 1.71361 1.50896 1.35411 1.22777 0.92307 1.08425 1.02743 1.22152 0.91086 0.90873 0.96705 1.18789 0.92742 1.08008 0.97413 1.21282 0.91716 0.95380 0.97199 1.20421 0.94869 1.07456 0.99821 1.20180 0.84153 0.93034 0.94910 1.83888 1.15446 1.72945 1.40261 1.21942 0.90505 1.40646 0.96123 0.87723 1.26608 0.95854 0.97043 1.02249 1.70157 1.07317 1.44715 1.32898 0.84521 0.78163 0.77938 0.75567 1.17434 1.19298 1.19315 1.21195 0.95556 1.09276 1.00748 1.21311 0.92423 0.94588 0.97607 1.61990 1.57269 1.02564 1.01268 1.22516 0.98179 0.90143 1.02299 1.22689 1.03114 0.97404 0.85697 1.23565 0.93405 1.03542 1.04718 1.23100 0.96121 1.03451 0.98681 0.91163 0.92229 0.91067 0.92703 0.91468 0.74532 0.83362 0.85825 0.82352 0.85931 0.91614 0.85785 0.83842 0.93570 0.91373 0.92202 0.85493 0.88537 0.88137 0.87779 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.48 71.98 0.61 -0.81 16 2 C 0.08 0.77 2.44 44.92 0.11 0.88 16 3 H 0.10 0.86 7.96 -2.39 -0.02 0.84 16 4 C 0.13 2.01 4.84 86.38 0.42 2.43 16 5 N -0.70 -12.66 5.38 -467.50 -2.52 -15.18 16 6 C 0.55 13.89 7.74 86.33 0.67 14.55 16 7 O -0.60 -19.93 16.23 -4.42 -0.07 -20.00 16 8 C -0.24 -5.77 9.41 23.62 0.22 -5.55 16 9 C 0.01 0.33 9.45 23.82 0.23 0.55 16 10 C -0.17 -5.37 5.87 -20.13 -0.12 -5.49 16 11 C -0.04 -1.22 9.40 22.55 0.21 -1.00 16 12 C -0.21 -8.35 9.97 22.34 0.22 -8.13 16 13 C 0.13 6.23 6.66 22.72 0.15 6.38 16 14 O -0.22 -12.86 9.74 -20.39 -0.20 -13.06 16 15 C -0.42 -23.60 9.48 67.94 0.64 -22.96 16 16 H 0.11 5.44 5.18 -2.91 -0.02 5.42 16 17 C -0.02 -1.05 5.49 84.86 0.47 -0.58 16 18 N -0.91 -54.67 13.67 21.62 0.30 -54.37 16 19 Si 1.02 41.80 29.55 68.60 2.03 43.83 16 20 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 23 C -0.25 -10.57 9.14 22.34 0.20 -10.36 16 24 C -0.04 -1.43 9.78 22.55 0.22 -1.21 16 25 N -0.51 -5.58 4.36 -871.81 -3.80 -9.38 16 26 C 0.02 0.19 7.41 127.69 0.95 1.14 16 27 C 0.02 0.18 5.20 44.91 0.23 0.42 16 28 C -0.21 -1.81 9.51 30.62 0.29 -1.52 16 29 C -0.18 -1.74 9.99 30.62 0.31 -1.43 16 30 H 0.07 0.49 7.52 -2.39 -0.02 0.48 16 31 H 0.06 0.54 6.33 -2.38 -0.02 0.52 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 1.00 6.80 -2.39 -0.02 0.98 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 35 H 0.42 6.00 8.12 -92.71 -0.75 5.25 16 36 H 0.15 2.79 6.06 -2.92 -0.02 2.77 16 37 H 0.12 3.47 7.52 -2.91 -0.02 3.45 16 38 H 0.16 3.73 6.16 -2.91 -0.02 3.72 16 39 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 40 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.12 5.33 5.62 -2.91 -0.02 5.32 16 42 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 43 H 0.05 0.46 5.31 -2.39 -0.01 0.45 16 44 H 0.07 0.81 6.63 -2.39 -0.02 0.79 16 45 H 0.06 0.87 6.58 -2.39 -0.02 0.85 16 46 H 0.13 0.93 7.93 -2.39 -0.02 0.91 16 47 H 0.10 0.88 5.90 -2.39 -0.01 0.86 16 48 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.09 1.05 7.56 -2.38 -0.02 1.03 16 Total: -1.00 -71.60 404.69 1.99 -69.61 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.22 Total: 31.24 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 6.03 Total: -32.70 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -6.02 Total: -78.92 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.27 Total: -33.06 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -71.60 1.99 -69.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057714022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.337 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds