Wall clock time and date at job start Wed Apr 1 2020 02:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47253 * 2 1 4 4 C 1.53000 * 109.47344 * 239.99477 * 2 1 3 5 5 N 1.46495 * 109.47615 * 185.00258 * 4 2 1 6 6 C 1.34770 * 120.00491 * 179.97438 * 5 4 2 7 7 O 1.21722 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.46250 * 120.00046 * 179.97438 * 6 5 4 9 9 C 1.35031 * 119.99722 * 180.02562 * 8 6 5 10 10 C 1.46959 * 119.99896 * 180.27394 * 9 8 6 11 11 C 1.40027 * 120.10017 * 359.45143 * 10 9 8 12 12 C 1.37601 * 119.89863 * 179.78912 * 11 10 9 13 13 C 1.39178 * 120.09610 * 0.48118 * 12 11 10 14 14 O 1.35575 * 119.89259 * 179.76441 * 13 12 11 15 15 C 1.34788 * 116.99533 * 174.42515 * 14 13 12 16 16 H 1.08001 * 120.00124 * 5.05799 * 15 14 13 17 17 C 1.38720 * 119.99795 * 185.06035 * 15 14 13 18 18 N 1.31507 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99984 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47306 * 119.99699 * 19 17 15 22 22 H 1.48503 * 109.47196 * 239.99770 * 19 17 15 23 23 C 1.39170 * 120.20621 * 359.74800 * 13 12 11 24 24 C 1.37600 * 120.10262 * 0.02562 * 23 13 12 25 25 N 1.46905 * 109.46776 * 119.99568 * 2 1 3 26 26 C 1.46899 * 110.99810 * 58.95690 * 25 2 1 27 27 C 1.46894 * 111.00262 * 294.99923 * 25 2 1 28 28 C 1.52999 * 117.50111 * 248.62385 * 27 25 2 29 29 C 1.52996 * 117.49977 * 180.02562 * 27 25 2 30 30 H 1.09001 * 109.47005 * 300.00207 * 1 2 3 31 31 H 1.08997 * 109.47081 * 60.00512 * 1 2 3 32 32 H 1.09001 * 109.47146 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47018 * 65.00049 * 4 2 1 34 34 H 1.09009 * 109.46876 * 305.00607 * 4 2 1 35 35 H 0.96999 * 119.99771 * 359.97438 * 5 4 2 36 36 H 1.07990 * 120.00180 * 359.97438 * 8 6 5 37 37 H 1.08000 * 120.00105 * 359.97438 * 9 8 6 38 38 H 1.08005 * 120.04944 * 359.97438 * 11 10 9 39 39 H 1.07995 * 119.95289 * 180.22906 * 12 11 10 40 40 H 0.97008 * 119.99947 * 180.02562 * 18 17 15 41 41 H 1.08006 * 119.94848 * 179.97438 * 23 13 12 42 42 H 1.07997 * 120.05056 * 180.02562 * 24 23 13 43 43 H 1.09000 * 109.47663 * 59.99411 * 26 25 2 44 44 H 1.09006 * 109.47085 * 179.97438 * 26 25 2 45 45 H 1.08997 * 109.47160 * 299.99737 * 26 25 2 46 46 H 1.08999 * 115.54888 * 34.32831 * 27 25 2 47 47 H 1.09001 * 117.49364 * 0.02562 * 28 27 25 48 48 H 1.08994 * 117.49938 * 145.01759 * 28 27 25 49 49 H 1.09003 * 117.49991 * 214.97781 * 29 27 25 50 50 H 1.08996 * 117.50044 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 3.5001 -0.8266 -1.1905 6 6 4.1731 -1.4294 -2.1905 7 8 3.5678 -1.8861 -3.1427 8 6 5.6307 -1.5339 -2.1321 9 6 6.3049 -2.1375 -3.1343 10 6 7.7691 -2.2478 -3.0728 11 6 8.4681 -1.7176 -1.9815 12 6 9.8386 -1.8271 -1.9260 13 6 10.5309 -2.4548 -2.9574 14 8 11.8816 -2.5562 -2.9008 15 6 12.4824 -3.2745 -3.8703 16 1 11.9000 -3.6691 -4.6897 17 6 13.8489 -3.5071 -3.8154 18 7 14.5581 -3.0262 -2.8178 19 14 14.6814 -4.5032 -5.1584 20 1 13.6697 -4.9278 -6.1592 21 1 15.7164 -3.6709 -5.8227 22 1 15.3199 -5.7035 -4.5609 23 6 9.8408 -2.9790 -4.0464 24 6 8.4699 -2.8783 -4.1081 25 7 2.0197 -0.6924 1.1995 26 6 1.5283 -2.0760 1.2461 27 6 1.6487 0.0392 2.4181 28 6 2.7747 0.7002 3.2157 29 6 2.0869 -0.5533 3.7589 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7518 -0.1585 -2.1369 34 1 1.6054 -1.7199 -1.2950 35 1 3.9825 -0.4623 -0.4319 36 1 6.1678 -1.1276 -1.2879 37 1 5.7678 -2.5434 -3.9788 38 1 7.9320 -1.2262 -1.1830 39 1 10.3782 -1.4218 -1.0829 40 1 15.5138 -3.1885 -2.7796 41 1 10.3823 -3.4649 -4.8447 42 1 7.9352 -3.2858 -4.9534 43 1 1.8762 -2.6151 0.3649 44 1 1.9060 -2.5657 2.1437 45 1 0.4385 -2.0742 1.2640 46 1 0.6875 0.5520 2.3843 47 1 3.7907 0.5924 2.8359 48 1 2.5544 1.6480 3.7066 49 1 1.4139 -0.4303 4.6075 50 1 2.6508 -1.4858 3.7368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057714024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:47 Heat of formation + Delta-G solvation = 10.450874 kcal Electronic energy + Delta-G solvation = -28309.893959 eV Core-core repulsion = 24304.237752 eV Total energy + Delta-G solvation = -4005.656207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.96510 -39.21409 -38.86762 -36.87776 -36.15051 -33.71796 -33.14634 -32.25808 -30.76821 -30.39621 -28.46896 -26.67542 -26.53592 -25.57114 -23.12411 -22.63388 -22.14173 -21.84072 -20.62656 -19.93405 -19.15115 -18.10567 -17.39631 -17.10078 -16.93546 -16.17574 -15.46591 -15.33582 -14.82484 -14.78130 -14.62466 -14.45492 -14.29850 -13.82979 -13.78337 -13.52700 -13.36274 -13.08177 -12.97748 -12.85191 -12.56129 -12.54308 -12.14225 -11.93966 -11.90055 -11.72580 -11.67174 -11.65315 -11.16039 -11.12478 -11.02789 -10.83276 -10.63028 -10.56206 -10.51131 -9.71947 -9.56221 -9.46481 -9.02135 -8.81147 -8.71259 -8.34958 -7.07513 -6.62890 -4.17796 1.13379 2.16493 2.61187 3.05103 3.06346 3.11930 3.18497 3.38451 3.47289 3.66913 3.84160 4.33911 4.51124 4.54301 4.56614 4.62638 4.77112 4.83427 4.88754 4.94930 5.07661 5.10592 5.15349 5.20746 5.26936 5.28407 5.30558 5.32657 5.46403 5.54439 5.57456 5.64153 5.68971 5.70809 5.71290 5.78245 5.82955 6.04688 6.16018 6.43507 6.50772 6.54454 6.61975 6.66120 6.69992 6.82833 6.95456 7.16554 7.27022 7.31948 7.67185 7.71186 7.82746 8.45464 8.82178 9.49629 10.53942 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.001637 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.791934 B =17097.268624 C =18166.684228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.070 3.930 3 H 0.091 0.909 4 C 0.130 3.870 5 N -0.721 5.721 6 C 0.553 3.447 7 O -0.565 6.565 8 C -0.278 4.278 9 C 0.034 3.966 10 C -0.196 4.196 11 C -0.043 4.043 12 C -0.199 4.199 13 C 0.167 3.833 14 O -0.164 6.164 15 C -0.393 4.393 16 H 0.098 0.902 17 C 0.041 3.959 18 N -0.853 5.853 19 Si 0.945 3.055 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.242 4.242 24 C -0.036 4.036 25 N -0.506 5.506 26 C 0.018 3.982 27 C -0.001 4.001 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.407 0.593 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.273 0.727 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.031 0.969 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.900 5.832 9.331 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.038 4.038 3 H 0.109 0.891 4 C 0.005 3.995 5 N -0.373 5.373 6 C 0.345 3.655 7 O -0.447 6.447 8 C -0.299 4.299 9 C 0.014 3.986 10 C -0.197 4.197 11 C -0.061 4.061 12 C -0.219 4.219 13 C 0.110 3.890 14 O -0.065 6.065 15 C -0.468 4.468 16 H 0.115 0.885 17 C -0.165 4.165 18 N -0.486 5.486 19 Si 0.769 3.231 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.261 4.261 24 C -0.055 4.055 25 N -0.229 5.229 26 C -0.129 4.129 27 C -0.109 4.109 28 C -0.201 4.201 29 C -0.212 4.212 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.242 0.758 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.083 0.917 41 H 0.149 0.851 42 H 0.132 0.868 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.050 0.950 46 H 0.110 0.890 47 H 0.120 0.880 48 H 0.111 0.889 49 H 0.112 0.888 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.367 5.578 8.876 26.526 hybrid contribution -0.268 -0.273 -0.185 0.425 sum -24.635 5.305 8.691 26.656 Atomic orbital electron populations 1.22383 0.96438 1.02804 1.02752 1.21968 0.93495 0.98808 0.89559 0.89061 1.21305 0.81368 1.00524 0.96266 1.45682 1.06809 1.60661 1.24119 1.18415 0.88363 0.77051 0.81656 1.90766 1.70731 1.49327 1.33836 1.22450 0.92168 1.11985 1.03264 1.22270 0.92397 0.88565 0.95361 1.18474 0.91674 1.10815 0.98774 1.20890 0.92961 0.96077 0.96221 1.20154 0.93514 1.08383 0.99815 1.19612 0.84566 0.92059 0.92731 1.83908 1.13733 1.61110 1.47740 1.21520 0.91654 1.31096 1.02550 0.88511 1.25390 0.95440 0.97388 0.98291 1.70026 1.07744 1.41318 1.29479 0.85585 0.79337 0.78899 0.79301 1.18874 1.19944 1.19939 1.21101 0.94338 1.09507 1.01184 1.20988 0.93565 0.94704 0.96204 1.61961 1.58484 1.02104 1.00351 1.22467 0.98133 0.89200 1.03149 1.22476 0.97568 1.02611 0.88262 1.23072 0.98299 0.96278 1.02408 1.23049 1.03934 0.98632 0.95614 0.92004 0.91453 0.91816 0.91258 0.91705 0.75790 0.85937 0.86018 0.86381 0.86149 0.91692 0.85145 0.86845 0.90827 0.91254 0.95040 0.89013 0.87959 0.88884 0.88840 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 8.58 37.16 0.32 -0.71 16 2 C 0.07 0.48 2.51 -67.71 -0.17 0.31 16 3 H 0.09 0.61 8.13 -51.93 -0.42 0.19 16 4 C 0.13 1.19 4.69 -4.04 -0.02 1.17 16 5 N -0.72 -7.71 5.38 -61.76 -0.33 -8.05 16 6 C 0.55 7.92 7.74 -13.04 -0.10 7.82 16 7 O -0.57 -10.04 16.23 5.17 0.08 -9.95 16 8 C -0.28 -3.90 9.41 -37.50 -0.35 -4.25 16 9 C 0.03 0.53 9.45 -37.19 -0.35 0.18 16 10 C -0.20 -3.41 5.87 -105.03 -0.62 -4.02 16 11 C -0.04 -0.75 9.40 -39.14 -0.37 -1.12 16 12 C -0.20 -4.03 9.97 -39.47 -0.39 -4.43 16 13 C 0.17 3.87 6.66 -38.89 -0.26 3.61 16 14 O -0.16 -4.48 9.74 0.70 0.01 -4.47 16 15 C -0.39 -10.51 9.48 30.91 0.29 -10.21 16 16 H 0.10 2.39 5.18 -52.49 -0.27 2.12 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.85 -24.00 13.67 55.48 0.76 -23.25 16 19 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.24 -5.07 9.14 -39.47 -0.36 -5.43 16 24 C -0.04 -0.66 9.78 -39.15 -0.38 -1.04 16 25 N -0.51 -3.55 4.34 -226.91 -0.98 -4.54 16 26 C 0.02 0.13 8.67 60.06 0.52 0.65 16 27 C 0.00 0.00 5.04 -67.72 -0.34 -0.34 16 28 C -0.16 -1.00 10.46 -26.76 -0.28 -1.27 16 29 C -0.17 -1.03 9.72 -26.76 -0.26 -1.29 16 30 H 0.06 0.32 6.34 -51.93 -0.33 -0.01 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.37 6.38 -51.93 -0.33 0.04 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.65 6.70 -51.92 -0.35 0.31 16 35 H 0.41 3.77 8.12 -40.82 -0.33 3.43 16 36 H 0.12 1.50 6.06 -52.49 -0.32 1.19 16 37 H 0.12 1.89 7.52 -52.49 -0.39 1.50 16 38 H 0.12 1.68 6.16 -52.48 -0.32 1.36 16 39 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.13 2.71 5.62 -52.48 -0.29 2.41 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.07 0.62 6.44 -51.93 -0.33 0.28 16 44 H 0.07 0.48 6.76 -51.93 -0.35 0.13 16 45 H 0.03 0.20 6.28 -51.93 -0.33 -0.12 16 46 H 0.09 0.53 6.27 -51.93 -0.33 0.21 16 47 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 0.65 7.25 -51.93 -0.38 0.27 16 LS Contribution 406.66 15.07 6.13 6.13 Total: -1.00 -30.68 406.66 -9.76 -40.44 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.17 Total: 8.45 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -3.22 Total: -19.41 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.56 Total: -35.83 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.09 Total: -14.43 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.68 -9.76 -40.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057714024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.891 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds