Wall clock time and date at job start Wed Apr 1 2020 03:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47564 * 2 1 4 4 C 1.50695 * 109.46964 * 120.00206 * 2 1 3 5 5 O 1.21280 * 120.00191 * 95.77514 * 4 2 1 6 6 N 1.34780 * 120.00149 * 275.77655 * 4 2 1 7 7 C 1.46499 * 119.99479 * 359.97438 * 6 4 2 8 8 C 1.46499 * 120.00068 * 180.27615 * 6 4 2 9 9 C 1.50693 * 109.46952 * 269.72370 * 8 6 4 10 10 H 1.08000 * 120.00170 * 359.97438 * 9 8 6 11 11 C 1.37877 * 120.00032 * 180.02562 * 9 8 6 12 12 N 1.31522 * 120.00024 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00267 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47135 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47026 * 119.99696 * 13 11 9 16 16 H 1.48496 * 109.47401 * 240.00033 * 13 11 9 17 17 N 1.46908 * 109.46808 * 239.99844 * 2 1 3 18 18 C 1.46836 * 110.99850 * 176.42387 * 17 2 1 19 19 C 1.50171 * 110.25151 * 287.75411 * 18 17 2 20 20 C 1.31510 * 123.05390 * 342.92559 * 19 18 17 21 21 C 1.47772 * 118.66304 * 180.36355 * 20 19 18 22 22 C 1.39575 * 120.08447 * 244.69967 * 21 20 19 23 23 C 1.37853 * 119.91466 * 179.76442 * 22 21 20 24 24 C 1.38867 * 120.08568 * 0.51191 * 23 22 21 25 25 O 1.35858 * 119.91429 * 179.72213 * 24 23 22 26 26 C 1.38857 * 120.16964 * 359.73896 * 24 23 22 27 27 C 1.37861 * 120.08676 * 0.02562 * 26 24 23 28 28 C 1.50331 * 122.67775 * 0.33285 * 20 19 18 29 29 C 1.47213 * 110.99819 * 53.41971 * 17 2 1 30 30 H 1.09007 * 109.46680 * 59.99741 * 1 2 3 31 31 H 1.08995 * 109.47564 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46914 * 300.00179 * 1 2 3 33 33 H 1.09002 * 109.46854 * 90.00766 * 7 6 4 34 34 H 1.08996 * 109.46831 * 209.99885 * 7 6 4 35 35 H 1.08997 * 109.47339 * 330.00659 * 7 6 4 36 36 H 1.09003 * 109.47176 * 29.72454 * 8 6 4 37 37 H 1.08995 * 109.46941 * 149.72187 * 8 6 4 38 38 H 0.96996 * 120.00059 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.33857 * 47.99286 * 18 17 2 40 40 H 1.08999 * 109.34003 * 167.51330 * 18 17 2 41 41 H 1.08003 * 118.47392 * 162.90139 * 19 18 17 42 42 H 1.08004 * 120.04267 * 0.02562 * 22 21 20 43 43 H 1.08001 * 119.96009 * 180.22543 * 23 22 21 44 44 H 0.96703 * 113.99786 * 270.02023 * 25 24 23 45 45 H 1.07999 * 119.96017 * 179.97438 * 26 24 23 46 46 H 1.08003 * 120.04159 * 179.97438 * 27 26 24 47 47 H 1.08996 * 109.43582 * 223.40669 * 28 20 19 48 48 H 1.08997 * 109.43268 * 103.53986 * 28 20 19 49 49 H 1.09003 * 109.62454 * 173.84329 * 29 17 2 50 50 H 1.09002 * 109.63094 * 294.22146 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3341 -1.8837 1.1725 6 7 2.1462 -0.0421 2.3952 7 6 1.7821 1.3753 2.4650 8 6 2.6402 -0.7312 3.5899 9 6 1.4785 -1.3267 4.3427 10 1 0.4727 -1.2039 3.9688 11 6 1.6995 -2.0277 5.5092 12 7 2.9242 -2.1769 5.9648 13 14 0.2594 -2.7654 6.4428 14 1 -1.0044 -2.4588 5.7260 15 1 0.4311 -4.2375 6.5347 16 1 0.2068 -2.1868 7.8094 17 7 2.0196 -0.6926 -1.1995 18 6 3.4849 -0.6386 -1.2770 19 6 3.9360 0.7493 -1.6312 20 6 3.1335 1.6545 -2.1471 21 6 3.6824 2.9888 -2.4666 22 6 3.2230 4.1162 -1.7839 23 6 3.7410 5.3586 -2.0813 24 6 4.7110 5.4907 -3.0662 25 8 5.2151 6.7176 -3.3604 26 6 5.1669 4.3723 -3.7512 27 6 4.6573 3.1258 -3.4561 28 6 1.6807 1.3870 -2.4258 29 6 1.4232 -0.1220 -2.4185 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.7277 1.4671 2.7256 34 1 2.3884 1.8691 3.2243 35 1 1.9593 1.8440 1.4970 36 1 3.3266 -1.5246 3.2940 37 1 3.1616 -0.0197 4.2302 38 1 3.0797 -2.6703 6.7853 39 1 3.9080 -0.9206 -0.3129 40 1 3.8321 -1.3364 -2.0389 41 1 4.9672 1.0167 -1.4536 42 1 2.4656 4.0147 -1.0206 43 1 3.3886 6.2309 -1.5510 44 1 4.7290 7.1868 -4.0523 45 1 5.9212 4.4790 -4.5168 46 1 5.0121 2.2564 -3.9897 47 1 1.4174 1.7951 -3.4016 48 1 1.0706 1.8626 -1.6579 49 1 1.8814 -0.5759 -3.2972 50 1 0.3501 -0.3132 -2.4252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073104516.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:45 Heat of formation + Delta-G solvation = -19.520135 kcal Electronic energy + Delta-G solvation = -30675.403895 eV Core-core repulsion = 26668.448048 eV Total energy + Delta-G solvation = -4006.955847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.62777 -39.78696 -38.28534 -37.00156 -34.74695 -33.81472 -32.58391 -31.50600 -31.25109 -30.67700 -28.62187 -27.72228 -25.87247 -24.91155 -24.14087 -23.27425 -22.74360 -22.41320 -20.97300 -18.88762 -18.75425 -17.45169 -17.07668 -16.62060 -16.48148 -15.90715 -15.72920 -15.25461 -15.17152 -14.70963 -14.59399 -14.32021 -14.10806 -13.84318 -13.76643 -13.59821 -13.23489 -12.88547 -12.69000 -12.46382 -12.28435 -12.21425 -12.11112 -11.98399 -11.87382 -11.78861 -11.65238 -11.35727 -11.25663 -10.96909 -10.82407 -10.81160 -10.76851 -10.54583 -10.12529 -9.57754 -9.33644 -9.22712 -8.78730 -8.53683 -8.41366 -8.11663 -7.59227 -6.01894 -4.06144 0.79444 1.04728 1.94588 3.29111 3.31314 3.38600 3.41984 3.48391 3.69629 3.87624 4.17874 4.45521 4.48341 4.59129 4.63434 4.74879 4.90926 5.03467 5.05084 5.05558 5.17024 5.23108 5.25882 5.33195 5.40879 5.47171 5.50734 5.58108 5.67027 5.68738 5.72433 5.76917 5.82228 5.88023 5.88517 5.99145 6.01680 6.09745 6.17014 6.22171 6.33457 6.39964 6.48529 6.67599 6.96746 7.10535 7.17293 7.29492 7.46493 7.58889 7.95016 8.26428 8.46453 8.94220 9.17789 9.58954 11.06256 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.002583 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.963034 B =10835.982800 C =11590.372380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 H 0.064 0.936 4 C 0.510 3.490 5 O -0.522 6.522 6 N -0.603 5.603 7 C 0.085 3.915 8 C 0.246 3.754 9 C -0.522 4.522 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.504 5.504 18 C 0.078 3.922 19 C -0.159 4.159 20 C -0.099 4.099 21 C -0.050 4.050 22 C -0.092 4.092 23 C -0.142 4.142 24 C 0.098 3.902 25 O -0.500 6.500 26 C -0.144 4.144 27 C -0.093 4.093 28 C -0.115 4.115 29 C 0.052 3.948 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.031 0.969 38 H 0.262 0.738 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.389 0.611 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 16.004 -22.051 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.052 4.052 3 H 0.081 0.919 4 C 0.295 3.705 5 O -0.398 6.398 6 N -0.337 5.337 7 C -0.060 4.060 8 C 0.127 3.873 9 C -0.561 4.561 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 N -0.226 5.226 18 C -0.049 4.049 19 C -0.179 4.179 20 C -0.100 4.100 21 C -0.050 4.050 22 C -0.110 4.110 23 C -0.161 4.161 24 C 0.054 3.946 25 O -0.311 6.311 26 C -0.162 4.162 27 C -0.111 4.111 28 C -0.154 4.154 29 C -0.076 4.076 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.244 0.756 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.151 14.631 -21.422 25.942 hybrid contribution -0.701 0.867 0.302 1.155 sum -0.550 15.498 -21.120 26.202 Atomic orbital electron populations 1.21808 0.92503 1.03677 1.02011 1.21748 0.96976 0.96363 0.90145 0.91891 1.20046 0.79204 0.87392 0.83853 1.90671 1.48928 1.15534 1.84668 1.48155 1.64354 1.10063 1.11092 1.21660 1.00530 0.82892 1.00888 1.19284 0.95183 0.92681 0.80128 1.21458 0.93575 1.33922 1.07160 0.92459 1.24942 0.95877 0.96038 0.97343 1.69944 1.19470 1.41753 1.22332 0.86451 0.82545 0.79068 0.79407 1.19813 1.20874 1.21015 1.62385 1.05763 1.53624 1.00806 1.21192 0.87775 0.92371 1.03588 1.23442 0.99890 0.96590 0.97975 1.19623 0.95655 0.92394 1.02295 1.19050 0.96527 0.93100 0.96322 1.21152 0.99521 0.91196 0.99096 1.21370 0.97118 0.98371 0.99207 1.18550 0.94717 0.84993 0.96340 1.84829 1.57065 1.28300 1.60864 1.21351 1.01448 0.92458 1.00987 1.21177 0.95991 0.96989 0.96986 1.21051 0.92751 0.99080 1.02497 1.22330 1.00995 0.91204 0.93053 0.91891 0.90979 0.91527 0.93225 0.91473 0.92859 0.93912 0.95141 0.92813 0.88674 0.88981 0.87179 0.85471 0.85309 0.75571 0.85422 0.85499 0.90541 0.90428 0.90301 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.52 37.16 0.32 -1.59 16 2 C 0.06 0.90 1.08 -68.86 -0.07 0.83 16 3 H 0.06 0.87 3.84 -51.93 -0.20 0.68 16 4 C 0.51 10.65 5.80 -10.99 -0.06 10.59 16 5 O -0.52 -13.29 15.29 5.56 0.08 -13.20 16 6 N -0.60 -12.90 2.86 -182.96 -0.52 -13.42 16 7 C 0.08 1.36 9.89 59.85 0.59 1.96 16 8 C 0.25 6.52 5.21 -5.20 -0.03 6.49 16 9 C -0.52 -14.96 9.39 -34.44 -0.32 -15.29 16 10 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 13 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 N -0.50 -7.19 4.57 -229.53 -1.05 -8.24 16 18 C 0.08 1.08 5.66 -5.27 -0.03 1.05 16 19 C -0.16 -1.87 8.98 -36.41 -0.33 -2.20 16 20 C -0.10 -1.04 4.64 -102.75 -0.48 -1.51 16 21 C -0.05 -0.50 5.17 -105.00 -0.54 -1.04 16 22 C -0.09 -0.87 9.74 -39.22 -0.38 -1.25 16 23 C -0.14 -1.29 9.97 -39.49 -0.39 -1.68 16 24 C 0.10 0.90 6.71 -39.12 -0.26 0.64 16 25 O -0.50 -4.03 13.49 -19.29 -0.26 -4.29 16 26 C -0.14 -1.27 9.97 -39.49 -0.39 -1.66 16 27 C -0.09 -0.86 9.67 -39.22 -0.38 -1.24 16 28 C -0.12 -1.07 5.10 -28.02 -0.14 -1.22 16 29 C 0.05 0.55 5.41 -3.61 -0.02 0.53 16 30 H 0.06 0.64 5.66 -51.92 -0.29 0.35 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.89 7.54 -51.93 -0.39 0.50 16 33 H 0.05 0.76 7.95 -51.93 -0.41 0.35 16 34 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16 35 H 0.05 0.70 5.86 -51.93 -0.30 0.39 16 36 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 37 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.10 1.62 6.36 -51.93 -0.33 1.29 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.11 1.27 7.98 -52.48 -0.42 0.85 16 42 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 44 H 0.39 1.18 9.06 45.56 0.41 1.59 16 45 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 46 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.72 6.20 -51.93 -0.32 0.39 16 49 H 0.08 0.76 8.08 -51.93 -0.42 0.35 16 50 H 0.09 0.83 6.59 -51.93 -0.34 0.48 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -35.25 397.79 -9.79 -45.05 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.73 Total: 2.16 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.03 Total: -4.97 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.83 Total: -47.82 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.18 Total: -17.49 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.25 -9.79 -45.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073104516.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.527 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds