Wall clock time and date at job start Wed Apr 1 2020 03:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47564 * 2 1 4 4 C 1.50695 * 109.46964 * 120.00206 * 2 1 3 5 5 O 1.21280 * 120.00191 * 95.77514 * 4 2 1 6 6 N 1.34780 * 120.00149 * 275.77655 * 4 2 1 7 7 C 1.46499 * 119.99479 * 359.97438 * 6 4 2 8 8 C 1.46499 * 120.00068 * 180.27615 * 6 4 2 9 9 C 1.50693 * 109.46952 * 269.72370 * 8 6 4 10 10 H 1.08000 * 120.00170 * 359.97438 * 9 8 6 11 11 C 1.37877 * 120.00032 * 180.02562 * 9 8 6 12 12 N 1.31522 * 120.00024 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00267 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47135 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47026 * 119.99696 * 13 11 9 16 16 H 1.48496 * 109.47401 * 240.00033 * 13 11 9 17 17 N 1.46908 * 109.46808 * 239.99844 * 2 1 3 18 18 C 1.46836 * 110.99850 * 176.42387 * 17 2 1 19 19 C 1.50171 * 110.25151 * 287.75411 * 18 17 2 20 20 C 1.31510 * 123.05390 * 342.92559 * 19 18 17 21 21 C 1.47772 * 118.66304 * 180.36355 * 20 19 18 22 22 C 1.39575 * 120.08447 * 244.69967 * 21 20 19 23 23 C 1.37853 * 119.91466 * 179.76442 * 22 21 20 24 24 C 1.38867 * 120.08568 * 0.51191 * 23 22 21 25 25 O 1.35858 * 119.91429 * 179.72213 * 24 23 22 26 26 C 1.38857 * 120.16964 * 359.73896 * 24 23 22 27 27 C 1.37861 * 120.08676 * 0.02562 * 26 24 23 28 28 C 1.50331 * 122.67775 * 0.33285 * 20 19 18 29 29 C 1.47213 * 110.99819 * 53.41971 * 17 2 1 30 30 H 1.09007 * 109.46680 * 59.99741 * 1 2 3 31 31 H 1.08995 * 109.47564 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46914 * 300.00179 * 1 2 3 33 33 H 1.09002 * 109.46854 * 90.00766 * 7 6 4 34 34 H 1.08996 * 109.46831 * 209.99885 * 7 6 4 35 35 H 1.08997 * 109.47339 * 330.00659 * 7 6 4 36 36 H 1.09003 * 109.47176 * 29.72454 * 8 6 4 37 37 H 1.08995 * 109.46941 * 149.72187 * 8 6 4 38 38 H 0.96996 * 120.00059 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.33857 * 47.99286 * 18 17 2 40 40 H 1.08999 * 109.34003 * 167.51330 * 18 17 2 41 41 H 1.08003 * 118.47392 * 162.90139 * 19 18 17 42 42 H 1.08004 * 120.04267 * 0.02562 * 22 21 20 43 43 H 1.08001 * 119.96009 * 180.22543 * 23 22 21 44 44 H 0.96703 * 113.99786 * 270.02023 * 25 24 23 45 45 H 1.07999 * 119.96017 * 179.97438 * 26 24 23 46 46 H 1.08003 * 120.04159 * 179.97438 * 27 26 24 47 47 H 1.08996 * 109.43582 * 223.40669 * 28 20 19 48 48 H 1.08997 * 109.43268 * 103.53986 * 28 20 19 49 49 H 1.09003 * 109.62454 * 173.84329 * 29 17 2 50 50 H 1.09002 * 109.63094 * 294.22146 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3341 -1.8837 1.1725 6 7 2.1462 -0.0421 2.3952 7 6 1.7821 1.3753 2.4650 8 6 2.6402 -0.7312 3.5899 9 6 1.4785 -1.3267 4.3427 10 1 0.4727 -1.2039 3.9688 11 6 1.6995 -2.0277 5.5092 12 7 2.9242 -2.1769 5.9648 13 14 0.2594 -2.7654 6.4428 14 1 -1.0044 -2.4588 5.7260 15 1 0.4311 -4.2375 6.5347 16 1 0.2068 -2.1868 7.8094 17 7 2.0196 -0.6926 -1.1995 18 6 3.4849 -0.6386 -1.2770 19 6 3.9360 0.7493 -1.6312 20 6 3.1335 1.6545 -2.1471 21 6 3.6824 2.9888 -2.4666 22 6 3.2230 4.1162 -1.7839 23 6 3.7410 5.3586 -2.0813 24 6 4.7110 5.4907 -3.0662 25 8 5.2151 6.7176 -3.3604 26 6 5.1669 4.3723 -3.7512 27 6 4.6573 3.1258 -3.4561 28 6 1.6807 1.3870 -2.4258 29 6 1.4232 -0.1220 -2.4185 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.7277 1.4671 2.7256 34 1 2.3884 1.8691 3.2243 35 1 1.9593 1.8440 1.4970 36 1 3.3266 -1.5246 3.2940 37 1 3.1616 -0.0197 4.2302 38 1 3.0797 -2.6703 6.7853 39 1 3.9080 -0.9206 -0.3129 40 1 3.8321 -1.3364 -2.0389 41 1 4.9672 1.0167 -1.4536 42 1 2.4656 4.0147 -1.0206 43 1 3.3886 6.2309 -1.5510 44 1 4.7290 7.1868 -4.0523 45 1 5.9212 4.4790 -4.5168 46 1 5.0121 2.2564 -3.9897 47 1 1.4174 1.7951 -3.4016 48 1 1.0706 1.8626 -1.6579 49 1 1.8814 -0.5759 -3.2972 50 1 0.3501 -0.3132 -2.4252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073104516.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:44 Heat of formation + Delta-G solvation = -44.251146 kcal Electronic energy + Delta-G solvation = -30676.476312 eV Core-core repulsion = 26668.448048 eV Total energy + Delta-G solvation = -4008.028264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70797 -40.63494 -39.58470 -37.73659 -36.54109 -34.97757 -34.51163 -32.43595 -32.01205 -31.65808 -29.78864 -29.27137 -27.39464 -26.15609 -25.29938 -24.58871 -23.61322 -23.28251 -22.13107 -20.17942 -19.36347 -18.71818 -18.62304 -18.28003 -17.66888 -16.94836 -16.59529 -16.49499 -16.33380 -16.15124 -15.61576 -15.52674 -15.28757 -15.17903 -14.53810 -14.41759 -14.27596 -14.19055 -13.96856 -13.74172 -13.59214 -13.48546 -13.24293 -13.15172 -12.96840 -12.89610 -12.83681 -12.76986 -12.64802 -12.51961 -12.37537 -12.20506 -12.00453 -11.67519 -11.66785 -11.40674 -10.65139 -10.42510 -10.04591 -9.98062 -9.40774 -9.27814 -9.18146 -8.22454 -6.37167 0.11225 0.39041 1.10383 1.35637 1.38468 1.50236 1.87608 2.24818 2.41846 2.64666 2.97969 3.06851 3.30900 3.62172 3.66540 3.88384 3.98316 4.00044 4.05069 4.10092 4.14306 4.22236 4.40017 4.42823 4.45261 4.55361 4.61891 4.67235 4.68996 4.74985 4.80046 4.83830 4.88104 4.94147 4.98117 5.01656 5.04960 5.06074 5.19338 5.21169 5.31270 5.44793 5.51585 5.56505 5.57371 5.77832 5.83673 5.88278 6.03090 6.06387 6.13045 6.70971 6.81703 6.86060 7.29204 7.54470 8.84888 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.002583 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.963034 B =10835.982800 C =11590.372380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.083 0.917 4 C 0.501 3.499 5 O -0.581 6.581 6 N -0.612 5.612 7 C 0.080 3.920 8 C 0.261 3.739 9 C -0.538 4.538 10 H 0.053 0.947 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.968 3.032 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.268 1.268 17 N -0.527 5.527 18 C 0.086 3.914 19 C -0.178 4.178 20 C -0.076 4.076 21 C -0.067 4.067 22 C -0.096 4.096 23 C -0.150 4.150 24 C 0.096 3.904 25 O -0.512 6.512 26 C -0.151 4.151 27 C -0.097 4.097 28 C -0.113 4.113 29 C 0.053 3.947 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.090 0.910 36 H -0.006 1.006 37 H 0.021 0.979 38 H 0.267 0.733 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.410 0.590 45 H 0.141 0.859 46 H 0.134 0.866 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 18.455 -23.640 30.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 H 0.100 0.900 4 C 0.289 3.711 5 O -0.460 6.460 6 N -0.344 5.344 7 C -0.062 4.062 8 C 0.140 3.860 9 C -0.576 4.576 10 H 0.071 0.929 11 C -0.193 4.193 12 N -0.570 5.570 13 Si 0.793 3.207 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.193 1.193 17 N -0.250 5.250 18 C -0.042 4.042 19 C -0.198 4.198 20 C -0.076 4.076 21 C -0.067 4.067 22 C -0.114 4.114 23 C -0.169 4.169 24 C 0.052 3.948 25 O -0.326 6.326 26 C -0.170 4.170 27 C -0.115 4.115 28 C -0.151 4.151 29 C -0.074 4.074 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.013 0.987 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.156 0.844 43 H 0.160 0.840 44 H 0.269 0.731 45 H 0.159 0.841 46 H 0.152 0.848 47 H 0.117 0.883 48 H 0.107 0.893 49 H 0.105 0.895 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.065 17.147 -23.047 28.800 hybrid contribution 0.067 0.176 0.709 0.734 sum -1.998 17.323 -22.337 28.338 Atomic orbital electron populations 1.21851 0.90624 1.02945 1.04247 1.21592 0.98030 0.96061 0.87667 0.89958 1.21179 0.77769 0.87035 0.85137 1.90628 1.51284 1.18412 1.85696 1.48179 1.64162 1.12134 1.09897 1.21936 1.01290 0.79774 1.03235 1.18738 0.93992 0.91531 0.81774 1.21704 0.93736 1.34510 1.07693 0.92858 1.25888 0.98808 0.96299 0.98347 1.70066 1.21656 1.42376 1.22918 0.85354 0.79019 0.77918 0.78444 1.18973 1.20826 1.19337 1.62333 1.05947 1.54824 1.01860 1.20955 0.87834 0.94006 1.01412 1.23168 1.00147 0.95941 1.00553 1.19770 0.96065 0.92011 0.99803 1.19083 0.97437 0.92884 0.97279 1.21298 0.99762 0.91110 0.99187 1.21556 0.97207 0.98768 0.99329 1.18705 0.94426 0.85471 0.96238 1.84770 1.57766 1.28059 1.61959 1.21535 1.01752 0.92279 1.01404 1.21310 0.95715 0.97521 0.96944 1.21102 0.91814 0.98071 1.04127 1.22460 1.01575 0.92053 0.91339 0.87698 0.93227 0.91204 0.91880 0.91210 0.89195 0.98740 0.96058 0.92437 0.93070 0.88570 0.87660 0.84408 0.84039 0.73061 0.84135 0.84776 0.88268 0.89323 0.89475 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.52 71.98 0.61 -2.78 16 2 C 0.08 2.28 1.08 44.17 0.05 2.33 16 3 H 0.08 2.07 3.84 -2.39 -0.01 2.06 16 4 C 0.50 21.60 5.80 87.66 0.51 22.11 16 5 O -0.58 -31.45 15.29 -3.03 -0.05 -31.50 16 6 N -0.61 -26.82 2.86 -851.16 -2.43 -29.26 16 7 C 0.08 2.47 9.89 127.77 1.26 3.74 16 8 C 0.26 14.55 5.21 85.63 0.45 14.99 16 9 C -0.54 -31.70 9.39 25.60 0.24 -31.46 16 10 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 11 C 0.01 0.31 5.46 84.65 0.46 0.77 16 12 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 13 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 N -0.53 -14.69 4.57 -880.09 -4.02 -18.71 16 18 C 0.09 2.45 5.66 85.40 0.48 2.93 16 19 C -0.18 -4.11 8.98 24.99 0.22 -3.88 16 20 C -0.08 -1.41 4.64 -17.98 -0.08 -1.50 16 21 C -0.07 -1.18 5.17 -20.11 -0.10 -1.28 16 22 C -0.10 -1.56 9.74 22.50 0.22 -1.34 16 23 C -0.15 -2.34 9.97 22.33 0.22 -2.12 16 24 C 0.10 1.54 6.71 22.57 0.15 1.69 16 25 O -0.51 -7.08 13.49 -91.95 -1.24 -8.32 16 26 C -0.15 -2.36 9.97 22.33 0.22 -2.14 16 27 C -0.10 -1.60 9.67 22.50 0.22 -1.38 16 28 C -0.11 -1.67 5.10 29.76 0.15 -1.52 16 29 C 0.05 0.96 5.41 86.27 0.47 1.42 16 30 H 0.10 1.67 5.66 -2.38 -0.01 1.66 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.66 7.54 -2.39 -0.02 1.65 16 33 H 0.06 1.80 7.95 -2.39 -0.02 1.78 16 34 H 0.07 2.12 7.89 -2.39 -0.02 2.10 16 35 H 0.09 2.10 5.86 -2.39 -0.01 2.09 16 36 H -0.01 -0.36 7.42 -2.39 -0.02 -0.37 16 37 H 0.02 1.21 7.89 -2.39 -0.02 1.19 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.05 1.90 6.36 -2.39 -0.02 1.88 16 40 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.11 2.48 7.98 -2.91 -0.02 2.46 16 42 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 44 H 0.41 1.47 9.06 -74.06 -0.67 0.80 16 45 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 47 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.09 1.19 6.20 -2.39 -0.01 1.17 16 49 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 50 H 0.10 1.55 6.59 -2.39 -0.02 1.54 16 Total: -1.00 -81.01 397.79 0.61 -80.40 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.29 Total: 16.23 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.75 Total: 0.59 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -6.17 Total: -105.13 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.29 Total: -39.82 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -81.01 0.61 -80.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073104516.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.148 kcal (2) G-P(sol) polarization free energy of solvation -81.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds