Wall clock time and date at job start Wed Apr 1 2020 04:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46892 * 2 1 4 4 C 1.46494 * 120.00286 * 270.00169 * 3 2 1 5 5 C 1.50699 * 109.47042 * 270.00052 * 4 3 2 6 6 H 1.08005 * 120.00132 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99740 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99835 * 180.02562 * 7 5 4 9 9 Si 1.86791 * 120.00279 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47547 * 89.99980 * 9 7 5 11 11 H 1.48503 * 109.47384 * 210.00242 * 9 7 5 12 12 H 1.48503 * 109.47141 * 329.99938 * 9 7 5 13 13 C 1.34778 * 119.99670 * 90.00596 * 3 2 1 14 14 O 1.21277 * 120.00226 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00137 * 359.97438 * 13 3 2 16 16 H 1.09000 * 110.88493 * 56.19136 * 15 13 3 17 17 C 1.54861 * 111.03808 * 292.29639 * 15 13 3 18 18 C 1.51282 * 104.20513 * 217.09695 * 17 15 13 19 19 O 1.21284 * 124.94166 * 196.28279 * 18 17 15 20 20 N 1.34415 * 110.11730 * 16.26751 * 18 17 15 21 21 C 1.46506 * 124.35027 * 180.42850 * 20 18 17 22 22 C 1.50704 * 109.46793 * 269.97664 * 21 20 18 23 23 C 1.38231 * 119.99771 * 269.72099 * 22 21 20 24 24 C 1.38243 * 119.99880 * 179.76688 * 23 22 21 25 25 C 1.38232 * 119.99735 * 0.51296 * 24 23 22 26 26 C 1.50707 * 119.99753 * 179.72353 * 25 24 23 27 27 C 1.38229 * 120.00099 * 359.74574 * 25 24 23 28 28 C 1.38232 * 119.99983 * 90.00085 * 22 21 20 29 29 C 1.46760 * 111.30303 * 0.40627 * 20 18 17 30 30 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46812 * 299.99091 * 1 2 3 32 32 H 1.09004 * 109.47348 * 59.99781 * 1 2 3 33 33 H 1.09005 * 109.46812 * 240.00369 * 2 1 3 34 34 H 1.09004 * 109.47348 * 120.00219 * 2 1 3 35 35 H 1.08993 * 109.47219 * 30.00096 * 4 3 2 36 36 H 1.08998 * 109.46934 * 150.00453 * 4 3 2 37 37 H 0.96994 * 120.00102 * 179.97438 * 8 7 5 38 38 H 1.08998 * 110.46775 * 98.42598 * 17 15 13 39 39 H 1.08993 * 110.60550 * 335.83751 * 17 15 13 40 40 H 1.09003 * 109.47223 * 29.97171 * 21 20 18 41 41 H 1.08995 * 109.47125 * 149.97612 * 21 20 18 42 42 H 1.08001 * 120.00420 * 0.02562 * 23 22 21 43 43 H 1.07998 * 119.99524 * 180.23177 * 24 23 22 44 44 H 1.08993 * 109.46579 * 270.01988 * 26 25 24 45 45 H 1.09003 * 109.46896 * 30.02227 * 26 25 24 46 46 H 1.08999 * 109.46935 * 150.01945 * 26 25 24 47 47 H 1.08000 * 119.99895 * 179.97438 * 27 25 24 48 48 H 1.07997 * 120.00353 * 359.97438 * 28 22 21 49 49 H 1.09002 * 110.24740 * 101.98470 * 29 20 18 50 50 H 1.09002 * 110.24616 * 223.89995 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1492 2.3907 -2.8774 8 7 5.3912 2.1837 -3.2573 9 14 3.0134 3.4374 -3.9278 10 1 3.1171 4.8573 -3.5055 11 1 3.4063 3.3154 -5.3547 12 1 1.6135 2.9716 -3.7584 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1674 15 6 1.9914 1.3062 2.4724 16 1 2.5605 0.3781 2.5256 17 6 0.4795 1.0427 2.6794 18 6 0.2672 1.2455 4.1635 19 8 -0.7044 0.8687 4.7841 20 7 1.3120 1.9037 4.6943 21 6 1.4336 2.2564 6.1111 22 6 0.8243 3.6149 6.3446 23 6 1.6058 4.7502 6.2388 24 6 1.0459 5.9966 6.4482 25 6 -0.2930 6.1070 6.7738 26 6 -0.9020 7.4655 7.0082 27 6 -1.0732 4.9713 6.8848 28 6 -0.5146 3.7252 6.6702 29 6 2.3158 2.2233 3.6724 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6879 -2.0283 36 1 2.0955 3.1411 -1.1382 37 1 5.7172 2.5742 -4.0831 38 1 0.2281 0.0211 2.3943 39 1 -0.1158 1.7548 2.1081 40 1 0.9113 1.5152 6.7161 41 1 2.4867 2.2774 6.3912 42 1 2.6528 4.6637 5.9884 43 1 1.6556 6.8838 6.3619 44 1 -0.8112 7.7272 8.0624 45 1 -0.3798 8.2069 6.4034 46 1 -1.9552 7.4447 6.7283 47 1 -2.1192 5.0576 7.1396 48 1 -1.1242 2.8380 6.7568 49 1 2.2359 3.2702 3.3796 50 1 3.3170 2.0126 4.0483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208211.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:12 Heat of formation + Delta-G solvation = -36.595059 kcal Electronic energy + Delta-G solvation = -30427.783373 eV Core-core repulsion = 26420.087102 eV Total energy + Delta-G solvation = -4007.696271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94214 -39.55764 -38.85259 -36.33003 -35.55899 -34.40303 -32.83293 -31.88280 -31.07308 -30.38938 -28.64095 -27.96916 -27.39532 -25.09707 -23.52674 -23.05602 -22.83950 -21.57405 -21.12764 -19.53306 -18.35578 -17.42228 -17.01219 -16.90868 -16.25469 -15.98523 -15.53943 -15.40573 -15.20184 -14.93646 -14.64604 -14.11198 -13.95835 -13.75095 -13.71239 -13.55670 -13.52323 -13.14088 -12.78074 -12.69765 -12.64546 -12.48153 -12.30200 -12.14701 -11.95579 -11.87768 -11.58213 -11.54364 -11.39034 -11.27354 -11.08406 -10.82960 -10.72899 -10.52326 -10.20064 -9.92914 -9.59238 -9.16225 -9.05723 -8.85963 -8.68085 -8.62968 -7.82690 -6.12963 -4.12086 1.07407 1.27316 2.50956 2.87112 3.13812 3.26136 3.32012 3.34135 3.61766 3.69329 4.22317 4.35629 4.36054 4.56507 4.61375 4.74334 4.77425 4.83962 4.87865 4.94002 5.10654 5.20791 5.21716 5.27438 5.29623 5.33817 5.36639 5.44163 5.49155 5.52331 5.56260 5.57906 5.66819 5.69385 5.91108 5.92165 5.95642 5.96428 6.11753 6.25129 6.35210 6.38808 6.42983 6.44458 6.64989 6.85237 6.87975 6.99586 7.24409 7.55892 8.07448 8.13342 8.41088 8.80365 8.90694 9.47127 11.00325 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.002791 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.567736 B =10028.533239 C =11129.761195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.105 3.895 3 N -0.586 5.586 4 C 0.216 3.784 5 C -0.529 4.529 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.519 3.481 14 O -0.534 6.534 15 C -0.122 4.122 16 H 0.114 0.886 17 C -0.147 4.147 18 C 0.522 3.478 19 O -0.534 6.534 20 N -0.613 5.613 21 C 0.168 3.832 22 C -0.117 4.117 23 C -0.097 4.097 24 C -0.124 4.124 25 C -0.084 4.084 26 C -0.115 4.115 27 C -0.125 4.125 28 C -0.093 4.093 29 C 0.116 3.884 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.037 0.963 37 H 0.265 0.735 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.120 0.880 48 H 0.125 0.875 49 H 0.093 0.907 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.101 0.819 19.878 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.019 4.019 3 N -0.317 5.317 4 C 0.095 3.905 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.305 3.695 14 O -0.412 6.412 15 C -0.144 4.144 16 H 0.132 0.868 17 C -0.187 4.187 18 C 0.310 3.690 19 O -0.411 6.411 20 N -0.346 5.346 21 C 0.046 3.954 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.142 4.142 25 C -0.084 4.084 26 C -0.172 4.172 27 C -0.143 4.143 28 C -0.112 4.112 29 C -0.007 4.007 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.138 0.862 48 H 0.143 0.857 49 H 0.112 0.888 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.239 1.274 20.092 23.057 hybrid contribution -0.291 0.502 -0.855 1.033 sum -11.530 1.775 19.237 22.498 Atomic orbital electron populations 1.22682 0.96714 1.02181 1.03330 1.21486 0.93543 0.83649 1.03215 1.47895 1.63488 1.13442 1.06851 1.19682 0.97438 0.93377 0.79963 1.21302 0.95254 1.32981 1.07219 0.90718 1.24851 0.94982 0.95790 0.97343 1.69891 1.15134 1.44918 1.23570 0.86862 0.81463 0.81616 0.79817 1.19901 1.21066 1.19064 1.19759 0.78538 0.86688 0.84554 1.90686 1.45693 1.17933 1.86845 1.22279 0.96912 1.00812 0.94387 0.86789 1.22771 0.96104 1.05597 0.94220 1.20891 0.81843 0.76555 0.89757 1.90693 1.30649 1.52377 1.67413 1.48373 1.21540 1.56573 1.08103 1.20244 1.01381 0.93012 0.80752 1.20197 0.94570 0.95516 1.01494 1.21069 0.99838 0.92013 0.98634 1.21028 0.94673 0.97572 1.00885 1.19966 0.94070 0.95541 0.98854 1.20803 1.00886 0.93469 1.02009 1.21026 0.99666 0.92107 1.01521 1.21135 0.94483 0.97751 0.97791 1.22040 0.91810 1.00908 0.85964 0.91799 0.91357 0.92179 0.89579 0.91315 0.95117 0.94538 0.92524 0.86630 0.87151 0.89146 0.89315 0.85891 0.86012 0.91215 0.91467 0.91580 0.86194 0.85711 0.88846 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 9.44 37.16 0.35 -1.89 16 2 C 0.10 1.49 5.65 -4.04 -0.02 1.47 16 3 N -0.59 -11.06 2.46 -175.06 -0.43 -11.49 16 4 C 0.22 5.03 4.23 -5.20 -0.02 5.00 16 5 C -0.53 -14.65 9.94 -34.44 -0.34 -14.99 16 6 H 0.07 2.26 8.06 -52.48 -0.42 1.84 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 9 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.66 16 13 C 0.52 9.51 6.97 -10.98 -0.08 9.43 16 14 O -0.53 -12.02 15.08 5.56 0.08 -11.94 16 15 C -0.12 -1.58 2.55 -90.01 -0.23 -1.81 16 16 H 0.11 1.26 7.25 -51.93 -0.38 0.88 16 17 C -0.15 -1.75 4.06 -26.62 -0.11 -1.86 16 18 C 0.52 6.97 8.02 -10.86 -0.09 6.88 16 19 O -0.53 -8.54 17.59 5.55 0.10 -8.44 16 20 N -0.61 -7.21 2.92 -173.78 -0.51 -7.72 16 21 C 0.17 1.68 6.06 -5.19 -0.03 1.65 16 22 C -0.12 -1.28 5.46 -104.62 -0.57 -1.86 16 23 C -0.10 -1.02 9.70 -39.58 -0.38 -1.41 16 24 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 25 C -0.08 -0.85 5.88 -104.62 -0.62 -1.46 16 26 C -0.12 -0.86 10.01 36.01 0.36 -0.50 16 27 C -0.13 -1.31 9.70 -39.58 -0.38 -1.70 16 28 C -0.09 -1.06 9.70 -39.58 -0.38 -1.45 16 29 C 0.12 1.41 6.70 -3.12 -0.02 1.39 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.76 3.79 -51.93 -0.20 0.56 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 34 H 0.07 0.80 6.12 -51.93 -0.32 0.48 16 35 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 36 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.12 1.17 6.17 -51.93 -0.32 0.84 16 39 H 0.11 1.39 6.94 -51.93 -0.36 1.03 16 40 H 0.09 0.90 7.87 -51.93 -0.41 0.49 16 41 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 46 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 47 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 48 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 49 H 0.09 1.35 6.96 -51.93 -0.36 0.99 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -34.71 402.07 -9.36 -44.07 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.72 Total: 2.08 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -3.05 Total: -2.76 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.16 Total: -45.53 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.18 Total: -20.37 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.71 -9.36 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208211.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.480 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds