Wall clock time and date at job start Wed Apr 1 2020 04:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46892 * 2 1 4 4 C 1.46494 * 120.00286 * 270.00169 * 3 2 1 5 5 C 1.50699 * 109.47042 * 270.00052 * 4 3 2 6 6 H 1.08005 * 120.00132 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99740 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99835 * 180.02562 * 7 5 4 9 9 Si 1.86791 * 120.00279 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47547 * 89.99980 * 9 7 5 11 11 H 1.48503 * 109.47384 * 210.00242 * 9 7 5 12 12 H 1.48503 * 109.47141 * 329.99938 * 9 7 5 13 13 C 1.34778 * 119.99670 * 90.00596 * 3 2 1 14 14 O 1.21277 * 120.00226 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00137 * 359.97438 * 13 3 2 16 16 H 1.09000 * 110.88493 * 56.19136 * 15 13 3 17 17 C 1.54861 * 111.03808 * 292.29639 * 15 13 3 18 18 C 1.51282 * 104.20513 * 217.09695 * 17 15 13 19 19 O 1.21284 * 124.94166 * 196.28279 * 18 17 15 20 20 N 1.34415 * 110.11730 * 16.26751 * 18 17 15 21 21 C 1.46506 * 124.35027 * 180.42850 * 20 18 17 22 22 C 1.50704 * 109.46793 * 269.97664 * 21 20 18 23 23 C 1.38231 * 119.99771 * 269.72099 * 22 21 20 24 24 C 1.38243 * 119.99880 * 179.76688 * 23 22 21 25 25 C 1.38232 * 119.99735 * 0.51296 * 24 23 22 26 26 C 1.50707 * 119.99753 * 179.72353 * 25 24 23 27 27 C 1.38229 * 120.00099 * 359.74574 * 25 24 23 28 28 C 1.38232 * 119.99983 * 90.00085 * 22 21 20 29 29 C 1.46760 * 111.30303 * 0.40627 * 20 18 17 30 30 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46812 * 299.99091 * 1 2 3 32 32 H 1.09004 * 109.47348 * 59.99781 * 1 2 3 33 33 H 1.09005 * 109.46812 * 240.00369 * 2 1 3 34 34 H 1.09004 * 109.47348 * 120.00219 * 2 1 3 35 35 H 1.08993 * 109.47219 * 30.00096 * 4 3 2 36 36 H 1.08998 * 109.46934 * 150.00453 * 4 3 2 37 37 H 0.96994 * 120.00102 * 179.97438 * 8 7 5 38 38 H 1.08998 * 110.46775 * 98.42598 * 17 15 13 39 39 H 1.08993 * 110.60550 * 335.83751 * 17 15 13 40 40 H 1.09003 * 109.47223 * 29.97171 * 21 20 18 41 41 H 1.08995 * 109.47125 * 149.97612 * 21 20 18 42 42 H 1.08001 * 120.00420 * 0.02562 * 23 22 21 43 43 H 1.07998 * 119.99524 * 180.23177 * 24 23 22 44 44 H 1.08993 * 109.46579 * 270.01988 * 26 25 24 45 45 H 1.09003 * 109.46896 * 30.02227 * 26 25 24 46 46 H 1.08999 * 109.46935 * 150.01945 * 26 25 24 47 47 H 1.08000 * 119.99895 * 179.97438 * 27 25 24 48 48 H 1.07997 * 120.00353 * 359.97438 * 28 22 21 49 49 H 1.09002 * 110.24740 * 101.98470 * 29 20 18 50 50 H 1.09002 * 110.24616 * 223.89995 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1492 2.3907 -2.8774 8 7 5.3912 2.1837 -3.2573 9 14 3.0134 3.4374 -3.9278 10 1 3.1171 4.8573 -3.5055 11 1 3.4063 3.3154 -5.3547 12 1 1.6135 2.9716 -3.7584 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1674 15 6 1.9914 1.3062 2.4724 16 1 2.5605 0.3781 2.5256 17 6 0.4795 1.0427 2.6794 18 6 0.2672 1.2455 4.1635 19 8 -0.7044 0.8687 4.7841 20 7 1.3120 1.9037 4.6943 21 6 1.4336 2.2564 6.1111 22 6 0.8243 3.6149 6.3446 23 6 1.6058 4.7502 6.2388 24 6 1.0459 5.9966 6.4482 25 6 -0.2930 6.1070 6.7738 26 6 -0.9020 7.4655 7.0082 27 6 -1.0732 4.9713 6.8848 28 6 -0.5146 3.7252 6.6702 29 6 2.3158 2.2233 3.6724 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6879 -2.0283 36 1 2.0955 3.1411 -1.1382 37 1 5.7172 2.5742 -4.0831 38 1 0.2281 0.0211 2.3943 39 1 -0.1158 1.7548 2.1081 40 1 0.9113 1.5152 6.7161 41 1 2.4867 2.2774 6.3912 42 1 2.6528 4.6637 5.9884 43 1 1.6556 6.8838 6.3619 44 1 -0.8112 7.7272 8.0624 45 1 -0.3798 8.2069 6.4034 46 1 -1.9552 7.4447 6.7283 47 1 -2.1192 5.0576 7.1396 48 1 -1.1242 2.8380 6.7568 49 1 2.2359 3.2702 3.3796 50 1 3.3170 2.0126 4.0483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208211.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:11 Heat of formation + Delta-G solvation = -57.037018 kcal Electronic energy + Delta-G solvation = -30428.669803 eV Core-core repulsion = 26420.087102 eV Total energy + Delta-G solvation = -4008.582701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.03660 -40.58172 -39.97899 -37.45456 -37.01406 -35.38835 -34.71337 -32.95991 -31.86323 -31.68831 -29.96879 -29.02342 -28.60751 -26.02034 -24.96581 -24.20514 -23.71228 -22.99867 -21.93241 -20.51249 -19.70775 -19.11267 -18.53240 -18.01010 -17.38050 -16.94477 -16.83092 -16.39396 -16.26515 -16.10669 -15.87628 -15.65514 -14.96257 -14.90953 -14.60933 -14.55935 -14.46663 -14.34042 -14.23203 -13.86476 -13.71582 -13.55866 -13.36852 -13.34191 -13.16707 -12.89997 -12.77922 -12.68945 -12.46572 -12.41496 -12.21656 -12.08124 -12.00538 -11.85321 -11.74403 -11.71529 -11.01314 -10.81304 -10.61575 -9.87115 -9.82671 -9.49462 -9.41745 -8.32239 -6.36469 0.27212 0.46034 1.33907 1.37241 1.45191 1.47823 1.70528 1.94733 2.27426 2.31959 2.86683 3.02375 3.16101 3.33520 3.65630 3.80179 3.80642 3.88662 4.04388 4.05968 4.10385 4.18268 4.23660 4.43660 4.45407 4.50987 4.53877 4.57641 4.65157 4.66625 4.72232 4.79465 4.82707 4.83544 4.90881 4.92516 4.96292 5.03657 5.05552 5.13940 5.24265 5.42685 5.44324 5.46038 5.49576 5.61363 5.65510 5.66061 6.02567 6.07864 6.25123 6.65118 6.69410 7.06386 7.22851 7.38638 8.84441 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.002791 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.567736 B =10028.533239 C =11129.761195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.097 3.903 3 N -0.593 5.593 4 C 0.224 3.776 5 C -0.531 4.531 6 H 0.034 0.966 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.277 1.277 12 H -0.239 1.239 13 C 0.513 3.487 14 O -0.585 6.585 15 C -0.109 4.109 16 H 0.143 0.857 17 C -0.138 4.138 18 C 0.519 3.481 19 O -0.563 6.563 20 N -0.605 5.605 21 C 0.165 3.835 22 C -0.127 4.127 23 C -0.106 4.106 24 C -0.136 4.136 25 C -0.092 4.092 26 C -0.113 4.113 27 C -0.136 4.136 28 C -0.109 4.109 29 C 0.119 3.881 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.019 0.981 37 H 0.267 0.733 38 H 0.141 0.859 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.133 0.867 48 H 0.117 0.883 49 H 0.070 0.930 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 0.417 20.618 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.025 4.025 3 N -0.323 5.323 4 C 0.102 3.898 5 C -0.570 4.570 6 H 0.052 0.948 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.766 3.234 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.163 1.163 13 C 0.301 3.699 14 O -0.465 6.465 15 C -0.130 4.130 16 H 0.161 0.839 17 C -0.178 4.178 18 C 0.307 3.693 19 O -0.442 6.442 20 N -0.337 5.337 21 C 0.044 3.956 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.153 4.153 25 C -0.092 4.092 26 C -0.170 4.170 27 C -0.154 4.154 28 C -0.127 4.127 29 C -0.004 4.004 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.159 0.841 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.151 0.849 48 H 0.135 0.865 49 H 0.088 0.912 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.857 0.833 20.858 24.517 hybrid contribution 0.273 0.626 -1.011 1.220 sum -12.584 1.459 19.848 23.546 Atomic orbital electron populations 1.22622 0.94366 1.04070 1.03038 1.21810 0.95399 0.81044 1.04227 1.47987 1.63535 1.15169 1.05634 1.19313 0.94880 0.93041 0.82574 1.21547 0.96969 1.31836 1.06616 0.94811 1.25790 0.96563 0.97231 0.98982 1.70039 1.17345 1.46641 1.24478 0.85789 0.80582 0.79155 0.77885 1.20257 1.20272 1.16258 1.20612 0.77109 0.86269 0.85930 1.90660 1.47814 1.20319 1.87744 1.22197 0.98290 1.01274 0.91270 0.83894 1.22775 0.94857 1.06937 0.93241 1.21073 0.81631 0.76405 0.90172 1.90685 1.31694 1.53776 1.68053 1.48413 1.20908 1.55711 1.08688 1.20426 1.02953 0.92521 0.79685 1.20323 0.94560 0.96132 1.01832 1.21290 1.00497 0.92107 0.98563 1.21331 0.95162 0.98127 1.00729 1.20307 0.94136 0.96600 0.98153 1.20844 1.01105 0.92076 1.02973 1.21266 1.00544 0.92047 1.01509 1.21222 0.94872 0.97950 0.98694 1.21973 0.93011 0.99428 0.85953 0.88770 0.90616 0.93533 0.90821 0.88164 0.93494 0.96340 0.92353 0.84078 0.87792 0.89100 0.86756 0.84747 0.84569 0.89904 0.90932 0.90965 0.84862 0.86476 0.91217 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 9.44 71.98 0.68 -3.03 16 2 C 0.10 2.54 5.65 86.38 0.49 3.03 16 3 N -0.59 -21.92 2.46 -826.16 -2.03 -23.95 16 4 C 0.22 10.41 4.23 85.63 0.36 10.78 16 5 C -0.53 -30.06 9.94 25.60 0.25 -29.81 16 6 H 0.03 2.13 8.06 -2.91 -0.02 2.10 16 7 C 0.01 0.71 5.47 84.65 0.46 1.18 16 8 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 9 Si 0.94 43.61 27.47 68.60 1.88 45.50 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 13 C 0.51 18.48 6.97 87.66 0.61 19.09 16 14 O -0.58 -26.76 15.08 -3.02 -0.05 -26.81 16 15 C -0.11 -2.59 2.55 -10.40 -0.03 -2.62 16 16 H 0.14 2.64 7.25 -2.39 -0.02 2.62 16 17 C -0.14 -2.95 4.06 30.67 0.12 -2.82 16 18 C 0.52 12.94 8.02 87.90 0.71 13.64 16 19 O -0.56 -17.26 17.59 -3.04 -0.05 -17.32 16 20 N -0.61 -13.23 2.92 -822.31 -2.40 -15.62 16 21 C 0.16 3.07 6.06 85.63 0.52 3.59 16 22 C -0.13 -2.72 5.46 -19.87 -0.11 -2.83 16 23 C -0.11 -2.16 9.70 22.27 0.22 -1.94 16 24 C -0.14 -2.67 9.70 22.27 0.22 -2.45 16 25 C -0.09 -1.76 5.88 -19.87 -0.12 -1.88 16 26 C -0.11 -1.53 10.01 71.24 0.71 -0.81 16 27 C -0.14 -2.78 9.70 22.27 0.22 -2.57 16 28 C -0.11 -2.47 9.70 22.27 0.22 -2.25 16 29 C 0.12 2.73 6.70 86.83 0.58 3.31 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.43 3.79 -2.39 -0.01 1.42 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 2.12 8.07 -2.38 -0.02 2.10 16 34 H 0.10 1.97 6.12 -2.39 -0.01 1.96 16 35 H 0.05 2.03 7.13 -2.39 -0.02 2.01 16 36 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 37 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.14 2.28 6.17 -2.39 -0.01 2.27 16 39 H 0.10 2.43 6.94 -2.39 -0.02 2.41 16 40 H 0.09 1.70 7.87 -2.39 -0.02 1.69 16 41 H 0.11 1.51 8.08 -2.39 -0.02 1.49 16 42 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 46 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 47 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 48 H 0.12 2.76 8.06 -2.91 -0.02 2.73 16 49 H 0.07 2.00 6.96 -2.39 -0.02 1.98 16 50 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -78.68 402.07 4.65 -74.03 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.88 Total: 20.85 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 6.11 Total: 1.61 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -4.13 Total: -97.85 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.10 Total: -44.13 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.50 kcal Total: -78.68 4.65 -74.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208211.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.994 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds