Wall clock time and date at job start Wed Apr 1 2020 04:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47206 * 2 1 4 4 C 1.46506 * 119.99755 * 89.99900 * 3 2 1 5 5 C 1.50703 * 109.47289 * 270.00096 * 4 3 2 6 6 H 1.07994 * 119.99399 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99789 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99734 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00111 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47123 * 89.99915 * 9 7 5 11 11 H 1.48498 * 109.47161 * 209.99603 * 9 7 5 12 12 H 1.48497 * 109.47329 * 329.99749 * 9 7 5 13 13 C 1.34774 * 120.00377 * 270.00089 * 3 2 1 14 14 O 1.21289 * 120.00200 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00038 * 0.02562 * 13 3 2 16 16 C 1.52994 * 109.47431 * 179.97438 * 15 13 3 17 17 H 1.09009 * 109.43588 * 55.08523 * 16 15 13 18 18 C 1.50818 * 109.44096 * 174.99827 * 16 15 13 19 19 C 1.38838 * 117.80332 * 289.05633 * 18 16 15 20 20 C 1.37958 * 120.50590 * 179.60842 * 19 18 16 21 21 C 1.38267 * 119.71862 * 359.94808 * 20 19 18 22 22 C 1.37911 * 119.82413 * 0.19507 * 21 20 19 23 23 C 1.37672 * 122.35057 * 108.97509 * 18 16 15 24 24 C 1.50599 * 122.87043 * 0.85692 * 23 18 16 25 25 C 1.52789 * 110.85263 * 340.17227 * 24 23 18 26 26 N 1.46690 * 109.43958 * 295.21560 * 16 15 13 27 27 C 1.34770 * 121.34444 * 104.19929 * 26 16 15 28 28 C 1.50702 * 119.99820 * 180.02562 * 27 26 16 29 29 O 1.21285 * 120.00195 * 359.97438 * 27 26 16 30 30 H 1.08998 * 109.46968 * 299.99920 * 1 2 3 31 31 H 1.09003 * 109.47167 * 59.99424 * 1 2 3 32 32 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46877 * 240.00623 * 2 1 3 34 34 H 1.08995 * 109.47204 * 120.00268 * 2 1 3 35 35 H 1.09001 * 109.47060 * 30.00546 * 4 3 2 36 36 H 1.09004 * 109.47073 * 150.00035 * 4 3 2 37 37 H 0.97007 * 120.00011 * 180.02562 * 8 7 5 38 38 H 1.09003 * 109.47424 * 300.00151 * 15 13 3 39 39 H 1.09003 * 109.47504 * 60.00089 * 15 13 3 40 40 H 1.07995 * 119.74841 * 359.60797 * 19 18 16 41 41 H 1.08001 * 120.14204 * 179.97438 * 20 19 18 42 42 H 1.08008 * 120.08464 * 180.17974 * 21 20 19 43 43 H 1.07998 * 119.70553 * 180.02562 * 22 21 20 44 44 H 1.08993 * 109.20454 * 100.52852 * 24 23 18 45 45 H 1.09009 * 109.20011 * 219.82333 * 24 23 18 46 46 H 1.08994 * 109.78166 * 167.07277 * 25 24 23 47 47 H 1.09001 * 109.77900 * 287.88460 * 25 24 23 48 48 H 1.09004 * 109.47056 * 90.00014 * 28 27 26 49 49 H 1.09003 * 109.46842 * 209.99330 * 28 27 26 50 50 H 1.09001 * 109.47266 * 329.99701 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 1.0067 2.7822 1.7039 6 1 0.1157 2.7246 1.0963 7 6 0.9950 3.5047 2.8781 8 7 -0.1008 4.1250 3.2575 9 14 2.5359 3.6035 3.9293 10 1 3.3481 4.7732 3.5083 11 1 2.1529 3.7547 5.3561 12 1 3.3317 2.3614 3.7593 13 6 2.2430 2.0166 -1.1671 14 8 2.6469 3.1603 -1.1671 15 6 1.9913 1.3065 -2.4723 16 6 2.3222 2.2440 -3.6351 17 1 3.3446 2.6069 -3.5289 18 6 2.1883 1.4952 -4.9374 19 6 3.1422 0.5299 -5.2303 20 6 3.0689 -0.1941 -6.4024 21 6 2.0367 0.0433 -7.2913 22 6 1.0903 1.0040 -7.0027 23 6 1.1642 1.7380 -5.8249 24 6 0.1037 2.7798 -5.5841 25 6 0.0258 3.1442 -4.1023 26 7 1.3974 3.3826 -3.6226 27 6 1.7872 4.5977 -3.1893 28 6 0.8116 5.7463 -3.1891 29 8 2.9230 4.7666 -2.7986 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.5506 1.3451 2.0284 36 1 3.0645 2.7985 1.1385 37 1 -0.1090 4.6337 4.0835 38 1 2.6211 0.4187 -2.5303 39 1 0.9432 1.0127 -2.5299 40 1 3.9477 0.3442 -4.5354 41 1 3.8143 -0.9433 -6.6246 42 1 1.9720 -0.5221 -8.2093 43 1 0.2847 1.1875 -7.6981 44 1 0.3416 3.6735 -6.1609 45 1 -0.8614 2.3907 -5.9088 46 1 -0.5715 4.0471 -3.9754 47 1 -0.4228 2.3228 -3.5436 48 1 0.2858 5.7762 -2.2348 49 1 1.3517 6.6817 -3.3357 50 1 0.0919 5.6119 -3.9965 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:08 Heat of formation + Delta-G solvation = -57.376121 kcal Electronic energy + Delta-G solvation = -32000.273712 eV Core-core repulsion = 27991.676306 eV Total energy + Delta-G solvation = -4008.597406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.85642 -40.34420 -39.74725 -37.18760 -36.83849 -34.90502 -34.47860 -33.00005 -31.87413 -30.97621 -30.34075 -29.91244 -28.85328 -25.64520 -24.69182 -24.15731 -23.88755 -22.79319 -21.77681 -19.96691 -19.23319 -19.06945 -18.32514 -17.96884 -17.43442 -17.06302 -16.69775 -16.47249 -16.22100 -15.86956 -15.54285 -15.39854 -15.18005 -14.73276 -14.60341 -14.47754 -14.38669 -14.11368 -14.03856 -13.89170 -13.60101 -13.56170 -13.42049 -13.07251 -12.99017 -12.89248 -12.77200 -12.71337 -12.50414 -12.40063 -12.28090 -12.02356 -11.89644 -11.78120 -11.69635 -11.61171 -10.81960 -10.61337 -10.44178 -9.70772 -9.52317 -9.46806 -9.33103 -8.33124 -6.34766 0.44114 0.51128 1.27841 1.33231 1.39851 1.81978 1.97596 2.13027 2.29306 2.36626 2.86580 3.01239 3.48489 3.72337 3.79373 3.87872 3.97745 4.07705 4.11676 4.18069 4.25696 4.29687 4.36122 4.36694 4.45939 4.48910 4.52794 4.60474 4.64759 4.66421 4.78711 4.79706 4.80801 4.90972 4.95441 4.96525 4.99264 5.02752 5.05727 5.14761 5.27168 5.47065 5.50898 5.51506 5.64952 5.66965 5.73775 5.80713 6.14684 6.28197 6.59363 6.64979 6.79577 7.25178 7.40583 7.62633 8.83263 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.003701 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.938062 B = 7564.096026 C = 8341.848829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.106 3.894 3 N -0.605 5.605 4 C 0.227 3.773 5 C -0.518 4.518 6 H 0.036 0.964 7 C 0.013 3.987 8 N -0.943 5.943 9 Si 0.939 3.061 10 H -0.284 1.284 11 H -0.273 1.273 12 H -0.243 1.243 13 C 0.486 3.514 14 O -0.557 6.557 15 C -0.128 4.128 16 C 0.205 3.795 17 H 0.070 0.930 18 C -0.099 4.099 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.078 4.078 24 C -0.090 4.090 25 C 0.096 3.904 26 N -0.610 5.610 27 C 0.506 3.494 28 C -0.165 4.165 29 O -0.566 6.566 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.007 0.993 37 H 0.266 0.734 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.109 0.891 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.040 -12.381 -23.808 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.016 4.016 3 N -0.338 5.338 4 C 0.105 3.895 5 C -0.557 4.557 6 H 0.054 0.946 7 C -0.185 4.185 8 N -0.584 5.584 9 Si 0.763 3.237 10 H -0.210 1.210 11 H -0.198 1.198 12 H -0.166 1.166 13 C 0.274 3.726 14 O -0.435 6.435 15 C -0.169 4.169 16 C 0.100 3.900 17 H 0.088 0.912 18 C -0.100 4.100 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.078 4.078 24 C -0.127 4.127 25 C -0.026 4.026 26 N -0.343 5.343 27 C 0.296 3.704 28 C -0.224 4.224 29 O -0.444 6.444 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.025 0.975 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.124 0.876 40 H 0.141 0.859 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.105 0.895 45 H 0.134 0.866 46 H 0.127 0.873 47 H 0.090 0.910 48 H 0.097 0.903 49 H 0.108 0.892 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.295 -11.560 -23.433 26.131 hybrid contribution 0.498 0.676 1.390 1.624 sum 0.203 -10.884 -22.043 24.585 Atomic orbital electron populations 1.22118 0.96050 1.02507 1.01156 1.21725 0.94756 0.81105 1.04008 1.48071 1.65075 1.14966 1.05683 1.19237 0.95039 0.92550 0.82718 1.21499 0.97398 1.30580 1.06196 0.94615 1.25724 0.99158 0.94567 0.99030 1.70028 1.29477 1.34413 1.24462 0.85846 0.79948 0.79771 0.78152 1.21048 1.19823 1.16601 1.21299 0.77858 0.87022 0.86392 1.90890 1.46246 1.18843 1.87510 1.22071 1.05183 0.99528 0.90115 1.19358 0.94361 0.85193 0.91126 0.91198 1.19630 0.97008 0.98213 0.95172 1.21208 0.98413 0.96063 0.98456 1.21329 0.99272 0.99889 0.93725 1.21447 0.94293 0.97901 1.00081 1.21441 1.00227 0.96032 0.96256 1.19716 0.95766 0.97751 0.94596 1.20875 0.98598 0.97755 0.95486 1.22031 0.82142 1.03555 0.94838 1.48019 1.12977 1.08548 1.64788 1.21170 0.88940 0.84646 0.75625 1.21917 0.99547 0.96084 1.04894 1.90679 1.23510 1.83938 1.46234 0.94938 0.93528 0.89007 0.87770 0.90046 0.93977 0.97505 0.92492 0.85971 0.87594 0.85870 0.83944 0.83551 0.83616 0.89525 0.86573 0.87269 0.90983 0.90302 0.89187 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 10.24 71.98 0.74 -4.06 16 2 C 0.11 3.17 5.98 86.38 0.52 3.68 16 3 N -0.61 -25.33 2.46 -826.14 -2.03 -27.36 16 4 C 0.23 11.60 4.27 85.63 0.37 11.97 16 5 C -0.52 -30.95 9.48 25.60 0.24 -30.70 16 6 H 0.04 2.35 7.66 -2.91 -0.02 2.33 16 7 C 0.01 0.78 5.47 84.65 0.46 1.25 16 8 N -0.94 -60.36 13.96 21.45 0.30 -60.06 16 9 Si 0.94 46.69 27.47 68.60 1.88 48.58 16 10 H -0.28 -14.55 7.11 99.48 0.71 -13.85 16 11 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.24 -11.00 6.54 99.48 0.65 -10.35 16 13 C 0.49 20.52 7.53 87.66 0.66 21.18 16 14 O -0.56 -29.66 11.35 19.92 0.23 -29.44 16 15 C -0.13 -3.75 3.76 29.84 0.11 -3.64 16 16 C 0.20 6.19 2.00 44.24 0.09 6.28 16 17 H 0.07 2.69 6.99 -2.38 -0.02 2.67 16 18 C -0.10 -2.27 5.17 -19.82 -0.10 -2.38 16 19 C -0.12 -2.43 9.17 22.35 0.20 -2.23 16 20 C -0.12 -1.89 10.05 22.21 0.22 -1.67 16 21 C -0.12 -1.58 10.04 22.20 0.22 -1.36 16 22 C -0.12 -1.72 9.59 22.37 0.21 -1.50 16 23 C -0.08 -1.44 5.76 -19.85 -0.11 -1.56 16 24 C -0.09 -1.32 5.86 29.75 0.17 -1.15 16 25 C 0.10 1.98 6.12 86.17 0.53 2.51 16 26 N -0.61 -18.71 2.32 -799.86 -1.85 -20.57 16 27 C 0.51 19.32 6.61 87.66 0.58 19.90 16 28 C -0.17 -4.74 9.52 71.24 0.68 -4.06 16 29 O -0.57 -28.10 14.16 19.93 0.28 -27.81 16 30 H 0.03 1.26 7.26 -2.39 -0.02 1.25 16 31 H 0.05 1.37 7.22 -2.39 -0.02 1.36 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.10 2.24 6.44 -2.39 -0.02 2.23 16 34 H 0.08 2.29 7.89 -2.39 -0.02 2.27 16 35 H 0.04 2.00 6.95 -2.39 -0.02 1.98 16 36 H 0.01 0.39 6.85 -2.38 -0.02 0.37 16 37 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 38 H 0.12 2.80 7.04 -2.39 -0.02 2.78 16 39 H 0.11 2.76 6.26 -2.39 -0.01 2.74 16 40 H 0.12 2.31 8.05 -2.91 -0.02 2.29 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.15 1.27 8.05 -2.91 -0.02 1.25 16 44 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.12 1.02 8.11 -2.38 -0.02 1.00 16 46 H 0.11 1.86 5.57 -2.39 -0.01 1.85 16 47 H 0.07 1.50 7.25 -2.39 -0.02 1.48 16 48 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 49 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 50 H 0.12 2.21 6.19 -2.39 -0.01 2.19 16 Total: -1.00 -90.13 389.88 5.49 -84.64 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.89 Total: 19.56 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.79 Total: 12.46 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -3.58 Total: -107.99 kcal Atomic # 8 Polarization: -57.76 SS G_CDS: 0.51 Total: -57.25 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.88 Total: 48.58 kcal Total: -90.13 5.49 -84.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.263 kcal (2) G-P(sol) polarization free energy of solvation -90.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds