Wall clock time and date at job start Wed Apr 1 2020 04:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.46999 * 2 1 4 4 C 1.46503 * 120.00165 * 274.40409 * 3 2 1 5 5 C 1.50706 * 109.46728 * 269.99873 * 4 3 2 6 6 H 1.07995 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99629 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00182 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99781 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47010 * 90.00018 * 9 7 5 11 11 H 1.48495 * 109.47111 * 210.00074 * 9 7 5 12 12 H 1.48500 * 109.47371 * 330.00054 * 9 7 5 13 13 C 1.34778 * 120.00048 * 94.40377 * 3 2 1 14 14 O 1.21281 * 120.00075 * 174.49187 * 13 3 2 15 15 C 1.50701 * 120.00353 * 354.48331 * 13 3 2 16 16 H 1.09001 * 110.85420 * 29.35185 * 15 13 3 17 17 C 1.54624 * 111.00452 * 153.16746 * 15 13 3 18 18 C 1.51285 * 104.19379 * 93.33872 * 17 15 13 19 19 O 1.21280 * 124.94061 * 196.25654 * 18 17 15 20 20 N 1.34417 * 110.11768 * 16.24866 * 18 17 15 21 21 C 1.46500 * 124.34904 * 180.38520 * 20 18 17 22 22 H 1.09003 * 109.46909 * 184.52649 * 21 20 18 23 23 C 1.52998 * 109.47052 * 304.51993 * 21 20 18 24 24 C 1.50696 * 109.47115 * 64.51944 * 21 20 18 25 25 C 1.38228 * 120.00132 * 219.57677 * 24 21 20 26 26 C 1.38240 * 119.99959 * 179.76770 * 25 24 21 27 27 C 1.38241 * 119.99935 * 0.50801 * 26 25 24 28 28 C 1.38231 * 119.99604 * 359.74413 * 27 26 25 29 29 C 1.38230 * 120.00456 * 0.02562 * 28 27 26 30 30 C 1.46767 * 111.30134 * 0.41218 * 20 18 17 31 31 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46950 * 299.99760 * 1 2 3 33 33 H 1.08990 * 109.46955 * 60.00360 * 1 2 3 34 34 H 1.08998 * 109.47282 * 239.99857 * 2 1 3 35 35 H 1.09000 * 109.47038 * 119.99565 * 2 1 3 36 36 H 1.09000 * 109.46431 * 29.99412 * 4 3 2 37 37 H 1.09001 * 109.47404 * 149.99767 * 4 3 2 38 38 H 0.96999 * 120.00231 * 180.02562 * 8 7 5 39 39 H 1.09001 * 110.48691 * 212.01672 * 17 15 13 40 40 H 1.09001 * 110.48470 * 334.65656 * 17 15 13 41 41 H 1.08998 * 109.47796 * 300.00079 * 23 21 20 42 42 H 1.09002 * 109.47455 * 60.00390 * 23 21 20 43 43 H 1.09003 * 109.47075 * 179.97438 * 23 21 20 44 44 H 1.08004 * 120.00321 * 359.97438 * 25 24 21 45 45 H 1.07997 * 119.99967 * 180.22548 * 26 25 24 46 46 H 1.07992 * 119.99849 * 179.72264 * 27 26 25 47 47 H 1.08006 * 119.99925 * 179.97438 * 28 27 26 48 48 H 1.08005 * 120.00746 * 179.97438 * 29 28 27 49 49 H 1.08996 * 110.24440 * 223.98092 * 30 20 18 50 50 H 1.08999 * 110.31814 * 102.01886 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1706 2.1043 -1.2650 5 6 3.5586 1.8801 -1.8078 6 1 4.2573 1.2612 -1.2645 7 6 3.9362 2.4650 -2.9978 8 7 3.0854 3.2190 -3.6590 9 14 5.6562 2.1865 -3.6710 10 1 5.6568 0.9873 -4.5469 11 1 6.0785 3.3736 -4.4567 12 1 6.6008 1.9770 -2.5444 13 6 2.3274 1.9867 1.1638 14 8 2.8252 3.0926 1.1584 15 6 2.0544 1.2897 2.4717 16 1 2.1111 0.2075 2.3539 17 6 3.0237 1.7781 3.5729 18 6 2.2725 2.8983 4.2582 19 8 2.7750 3.7278 4.9863 20 7 0.9672 2.8405 3.9425 21 6 -0.0435 3.7826 4.4294 22 1 -1.0295 3.4650 4.0902 23 6 -0.0161 3.8145 5.9588 24 6 0.2532 5.1592 3.8929 25 6 0.0806 6.2677 4.7005 26 6 0.3573 7.5301 4.2098 27 6 0.7965 7.6849 2.9082 28 6 0.9640 6.5767 2.0990 29 6 0.6919 5.3140 2.5911 30 6 0.6846 1.7119 3.0477 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.4363 1.7390 -1.9829 37 1 2.0145 3.1697 -1.0956 38 1 3.3509 3.6302 -4.4964 39 1 3.2364 0.9743 4.2778 40 1 3.9466 2.1525 3.1301 41 1 -0.2307 2.8188 6.3470 42 1 0.9699 4.1320 6.2981 43 1 -0.7678 4.5158 6.3211 44 1 -0.2671 6.1473 5.7159 45 1 0.2260 8.3959 4.8419 46 1 1.0084 8.6715 2.5235 47 1 1.3068 6.6976 1.0819 48 1 0.8224 4.4482 1.9588 49 1 0.0179 2.0253 2.2444 50 1 0.2401 0.8882 3.6063 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208460.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:23 Heat of formation + Delta-G solvation = -55.865232 kcal Electronic energy + Delta-G solvation = -31772.218030 eV Core-core repulsion = 27763.686141 eV Total energy + Delta-G solvation = -4008.531889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.11670 -40.51909 -39.72137 -37.33462 -36.93046 -35.62253 -34.83406 -32.14859 -31.68415 -31.41013 -29.88037 -29.35335 -28.41547 -25.70894 -25.11608 -24.23430 -23.32219 -23.08379 -22.37752 -20.06288 -19.76338 -18.78459 -18.43534 -18.09536 -17.56913 -17.18210 -16.58211 -16.40172 -16.17151 -15.95924 -15.75454 -15.47844 -14.98945 -14.75831 -14.68910 -14.55545 -14.46334 -14.23922 -14.02592 -13.76093 -13.62487 -13.45691 -13.23463 -13.11946 -12.97097 -12.83653 -12.76374 -12.66544 -12.62590 -12.49785 -12.37899 -12.11424 -11.94967 -11.82474 -11.76104 -11.69545 -10.72125 -10.64778 -10.50826 -9.86982 -9.81867 -9.54275 -9.39570 -8.23359 -6.37308 0.36506 0.46731 1.33287 1.36819 1.46406 1.59542 1.81445 2.07618 2.27710 2.42591 2.86176 3.06480 3.30826 3.47552 3.60378 3.73139 3.86533 3.90796 4.07533 4.10694 4.19510 4.23261 4.27023 4.36621 4.50079 4.52172 4.59148 4.60858 4.67840 4.68068 4.76594 4.80329 4.90856 4.93006 5.01654 5.07263 5.08101 5.09681 5.13356 5.23239 5.27397 5.48498 5.51381 5.54078 5.58879 5.60818 5.73443 5.87737 6.06941 6.08457 6.16075 6.70904 6.84395 7.22013 7.29080 7.52974 8.83210 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003774 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.839007 B = 7418.039552 C = 8550.765946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.598 5.598 4 C 0.268 3.732 5 C -0.538 4.538 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.275 1.275 13 C 0.499 3.501 14 O -0.587 6.587 15 C -0.115 4.115 16 H 0.163 0.837 17 C -0.136 4.136 18 C 0.522 3.478 19 O -0.571 6.571 20 N -0.611 5.611 21 C 0.192 3.808 22 H 0.126 0.874 23 C -0.157 4.157 24 C -0.107 4.107 25 C -0.113 4.113 26 C -0.125 4.125 27 C -0.128 4.128 28 C -0.145 4.145 29 C -0.113 4.113 30 C 0.119 3.881 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.021 0.979 37 H -0.010 1.010 38 H 0.265 0.735 39 H 0.151 0.849 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.137 0.863 47 H 0.100 0.900 48 H 0.094 0.906 49 H 0.076 0.924 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.448 -6.742 18.788 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.329 5.329 4 C 0.146 3.854 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.287 3.713 14 O -0.467 6.467 15 C -0.136 4.136 16 H 0.180 0.820 17 C -0.177 4.177 18 C 0.311 3.689 19 O -0.450 6.450 20 N -0.344 5.344 21 C 0.090 3.910 22 H 0.144 0.856 23 C -0.214 4.214 24 C -0.108 4.108 25 C -0.131 4.131 26 C -0.143 4.143 27 C -0.146 4.146 28 C -0.164 4.164 29 C -0.131 4.131 30 C -0.003 4.003 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.039 0.961 37 H 0.008 0.992 38 H 0.074 0.926 39 H 0.169 0.831 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.155 0.845 47 H 0.118 0.882 48 H 0.113 0.887 49 H 0.094 0.906 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.037 -5.622 18.989 23.175 hybrid contribution 1.390 0.623 -1.703 2.285 sum -10.647 -4.998 17.286 20.908 Atomic orbital electron populations 1.22198 0.94395 1.03665 1.01831 1.21876 0.95552 0.81112 1.04152 1.48250 1.63381 1.15112 1.06162 1.18594 0.95381 0.90687 0.80714 1.21717 0.99424 1.30477 1.06039 0.92941 1.25810 1.01513 0.94572 0.97186 1.70046 1.37110 1.33186 1.16567 0.85491 0.79395 0.78148 0.78253 1.18554 1.20972 1.19981 1.21035 0.77941 0.86036 0.86298 1.90716 1.44929 1.23151 1.87908 1.22488 0.96865 1.04078 0.90194 0.81998 1.22295 0.98572 0.98792 0.98014 1.21074 0.83132 0.85234 0.79482 1.90636 1.72758 1.41439 1.40198 1.48415 1.07676 1.29698 1.48614 1.19999 0.91663 0.83970 0.95356 0.85628 1.22173 1.03041 1.03917 0.92296 1.20425 1.00115 0.96891 0.93322 1.21431 0.99672 0.91693 1.00274 1.21495 0.99038 0.98405 0.95364 1.21389 0.99712 0.98569 0.94924 1.21253 1.01056 0.93965 1.00079 1.20969 0.99065 0.96892 0.96215 1.22324 0.94760 0.89879 0.93382 0.88463 0.91231 0.94994 0.91516 0.86970 0.96106 0.99237 0.92570 0.83141 0.90628 0.90197 0.93326 0.88861 0.82876 0.82940 0.84499 0.88183 0.88739 0.90596 0.84214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 71.98 0.74 -2.52 16 2 C 0.09 2.45 5.97 86.38 0.52 2.96 16 3 N -0.60 -23.33 2.46 -826.14 -2.03 -25.36 16 4 C 0.27 14.15 5.14 85.63 0.44 14.60 16 5 C -0.54 -30.93 9.39 25.60 0.24 -30.69 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.46 5.46 84.65 0.46 0.92 16 8 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 9 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 13 C 0.50 19.06 6.67 87.66 0.58 19.64 16 14 O -0.59 -29.88 14.93 -3.03 -0.05 -29.93 16 15 C -0.12 -2.66 2.99 -10.48 -0.03 -2.69 16 16 H 0.16 2.19 5.82 -2.39 -0.01 2.18 16 17 C -0.14 -3.58 6.09 30.59 0.19 -3.39 16 18 C 0.52 16.49 7.24 87.90 0.64 17.13 16 19 O -0.57 -22.76 15.86 -3.03 -0.05 -22.80 16 20 N -0.61 -15.03 2.09 -798.20 -1.67 -16.70 16 21 C 0.19 4.23 3.26 44.24 0.14 4.37 16 22 H 0.13 2.02 8.07 -2.39 -0.02 2.00 16 23 C -0.16 -2.81 8.13 71.98 0.58 -2.22 16 24 C -0.11 -3.11 5.04 -19.87 -0.10 -3.21 16 25 C -0.11 -2.82 9.12 22.27 0.20 -2.62 16 26 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 27 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 28 C -0.15 -5.33 10.05 22.27 0.22 -5.11 16 29 C -0.11 -4.16 9.26 22.27 0.21 -3.95 16 30 C 0.12 2.15 6.32 86.83 0.55 2.69 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.14 6.49 -2.39 -0.02 1.13 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 35 H 0.11 1.88 5.73 -2.39 -0.01 1.87 16 36 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 37 H -0.01 -0.65 7.50 -2.39 -0.02 -0.67 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.08 2.58 7.54 -2.39 -0.02 2.56 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 1.22 6.48 -2.39 -0.02 1.20 16 43 H 0.09 1.19 6.67 -2.39 -0.02 1.18 16 44 H 0.15 2.78 5.98 -2.91 -0.02 2.77 16 45 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 46 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 47 H 0.10 3.92 8.06 -2.91 -0.02 3.90 16 48 H 0.09 3.96 6.98 -2.91 -0.02 3.94 16 49 H 0.08 1.51 6.86 -2.39 -0.02 1.49 16 50 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -88.57 401.24 5.49 -83.08 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.94 Total: 21.09 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.03 Total: -0.51 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -3.41 Total: -98.52 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -0.09 Total: -52.73 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -88.57 5.49 -83.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208460.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.219 kcal (2) G-P(sol) polarization free energy of solvation -88.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds