Wall clock time and date at job start Wed Apr 1 2020 04:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46725 * 2 1 4 4 C 1.46506 * 120.00109 * 274.58349 * 3 2 1 5 5 C 1.50697 * 109.46979 * 270.00326 * 4 3 2 6 6 H 1.07996 * 120.00619 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99923 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99847 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00302 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46825 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47250 * 120.00436 * 9 7 5 12 12 H 1.48504 * 109.47231 * 240.00280 * 9 7 5 13 13 C 1.34776 * 119.99922 * 94.58893 * 3 2 1 14 14 O 1.21280 * 120.00444 * 354.88480 * 13 3 2 15 15 C 1.50700 * 119.99920 * 175.15947 * 13 3 2 16 16 H 1.08998 * 109.87699 * 33.79725 * 15 13 3 17 17 C 1.54334 * 109.88335 * 272.78786 * 15 13 3 18 18 C 1.55397 * 102.82722 * 218.48369 * 17 15 13 19 19 C 1.54908 * 101.66848 * 35.33776 * 18 17 15 20 20 N 1.47025 * 109.88425 * 154.82166 * 15 13 3 21 21 C 1.34770 * 125.64630 * 298.32460 * 20 15 13 22 22 O 1.21282 * 120.00014 * 359.97438 * 21 20 15 23 23 C 1.50700 * 119.99970 * 180.02562 * 21 20 15 24 24 C 1.50701 * 109.47111 * 179.97438 * 23 21 20 25 25 C 1.38228 * 120.00194 * 269.72184 * 24 23 21 26 26 C 1.38231 * 120.00347 * 179.81107 * 25 24 23 27 27 C 1.38236 * 119.99816 * 0.41963 * 26 25 24 28 28 C 1.38240 * 119.99837 * 359.81391 * 27 26 25 29 29 C 1.38234 * 120.00018 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47036 * 55.04281 * 1 2 3 31 31 H 1.08996 * 109.47002 * 175.04024 * 1 2 3 32 32 H 1.08993 * 109.47282 * 295.04801 * 1 2 3 33 33 H 1.09000 * 109.47075 * 240.00244 * 2 1 3 34 34 H 1.09001 * 109.47150 * 119.99534 * 2 1 3 35 35 H 1.08994 * 109.46613 * 30.00278 * 4 3 2 36 36 H 1.08997 * 109.47083 * 150.00346 * 4 3 2 37 37 H 0.97005 * 120.00354 * 179.97438 * 8 7 5 38 38 H 1.08999 * 110.71608 * 336.75862 * 17 15 13 39 39 H 1.09000 * 110.71639 * 100.02562 * 17 15 13 40 40 H 1.09001 * 110.89209 * 277.26314 * 18 17 15 41 41 H 1.09008 * 111.06982 * 153.48686 * 18 17 15 42 42 H 1.08999 * 110.36333 * 204.23772 * 19 18 17 43 43 H 1.08997 * 110.36504 * 81.91631 * 19 18 17 44 44 H 1.09000 * 109.46779 * 299.99390 * 23 21 20 45 45 H 1.09001 * 109.47293 * 59.99272 * 23 21 20 46 46 H 1.08008 * 119.99900 * 359.97438 * 25 24 23 47 47 H 1.07997 * 120.00570 * 180.21414 * 26 25 24 48 48 H 1.07997 * 120.00507 * 179.79062 * 27 26 25 49 49 H 1.08005 * 119.99642 * 179.97438 * 28 27 26 50 50 H 1.08000 * 119.99753 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1668 2.1057 -1.2647 5 6 3.5530 1.8820 -1.8119 6 1 4.2532 1.2620 -1.2720 7 6 3.9271 2.4682 -3.0025 8 7 3.0743 3.2229 -3.6603 9 14 5.6451 2.1904 -3.6812 10 1 6.4050 1.3088 -2.7590 11 1 5.5519 1.5468 -5.0162 12 1 6.3440 3.4946 -3.8082 13 6 2.3309 1.9855 1.1635 14 8 2.1211 1.4204 2.2159 15 6 2.9355 3.3659 1.1570 16 1 2.5314 3.9435 0.3256 17 6 4.4703 3.2661 1.0296 18 6 4.9689 4.3979 1.9704 19 6 3.9165 4.3477 3.1060 20 7 2.6430 4.0458 2.4273 21 6 1.4143 4.3443 2.8937 22 8 0.4319 4.0481 2.2473 23 6 1.2613 5.0472 4.2179 24 6 -0.2021 5.2628 4.5060 25 6 -0.8255 6.4231 4.0865 26 6 -2.1688 6.6191 4.3473 27 6 -2.8867 5.6588 5.0352 28 6 -2.2621 4.5006 5.4590 29 6 -0.9199 4.3026 5.1943 30 1 -0.3633 0.5888 -0.8423 31 1 -0.3633 -1.0238 -0.0888 32 1 -0.3633 0.4351 0.9309 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.4303 1.7412 -1.9808 36 1 2.0112 3.1709 -1.0937 37 1 3.3375 3.6357 -4.4978 38 1 4.8235 2.2945 1.3749 39 1 4.7846 3.4490 0.0020 40 1 4.9499 5.3622 1.4625 41 1 5.9663 4.1793 2.3521 42 1 3.8577 5.3116 3.6115 43 1 4.1634 3.5597 3.8174 44 1 1.7010 4.4364 5.0064 45 1 1.7694 6.0107 4.1788 46 1 -0.2637 7.1753 3.5527 47 1 -2.6567 7.5241 4.0166 48 1 -3.9353 5.8134 5.2420 49 1 -2.8229 3.7504 5.9968 50 1 -0.4319 3.3979 5.5257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133467357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:25 Heat of formation + Delta-G solvation = -43.909228 kcal Electronic energy + Delta-G solvation = -31291.660350 eV Core-core repulsion = 27283.646913 eV Total energy + Delta-G solvation = -4008.013438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.36370 -39.29045 -38.19136 -36.76164 -35.08164 -32.94001 -32.74973 -31.37854 -30.86359 -30.74493 -28.84993 -27.38487 -26.99889 -23.97593 -23.07571 -22.59032 -22.56306 -21.57588 -20.88049 -19.47169 -17.90771 -17.01414 -16.84069 -16.73721 -16.40788 -15.60729 -15.51567 -15.24274 -15.00555 -14.55282 -14.40910 -14.00064 -13.87336 -13.38496 -13.27680 -13.22104 -12.92370 -12.80133 -12.71641 -12.43884 -12.36751 -12.09072 -11.83521 -11.78904 -11.57420 -11.43644 -11.18471 -11.15429 -10.98882 -10.92566 -10.91420 -10.79600 -10.51278 -10.41864 -10.08742 -9.71196 -9.58497 -9.18170 -8.87199 -8.68279 -8.61554 -8.14559 -7.64151 -6.18883 -4.26779 1.35072 1.45089 2.91444 3.14817 3.18227 3.27845 3.30474 3.52305 3.84122 4.08947 4.31442 4.64567 4.72475 4.76045 4.82125 5.00622 5.07378 5.11090 5.13511 5.22378 5.27503 5.36786 5.41565 5.53305 5.55960 5.65254 5.66703 5.72530 5.87148 5.93432 5.98106 5.99919 6.00392 6.05892 6.09332 6.31929 6.33465 6.46415 6.49685 6.51768 6.52248 6.62091 6.66959 6.77000 6.85328 7.02296 7.25433 7.59592 7.75930 7.79861 8.05490 8.40042 8.50327 8.80106 9.09552 9.40647 10.87466 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.003281 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.196285 B = 8531.117247 C = 9177.277407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.118 3.882 3 N -0.591 5.591 4 C 0.236 3.764 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.518 3.482 14 O -0.570 6.570 15 C 0.126 3.874 16 H 0.104 0.896 17 C -0.110 4.110 18 C -0.133 4.133 19 C 0.100 3.900 20 N -0.602 5.602 21 C 0.532 3.468 22 O -0.522 6.522 23 C -0.096 4.096 24 C -0.062 4.062 25 C -0.105 4.105 26 C -0.121 4.121 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.265 0.735 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 5.994 15.524 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.322 5.322 4 C 0.116 3.884 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.305 3.695 14 O -0.450 6.450 15 C 0.019 3.981 16 H 0.122 0.878 17 C -0.148 4.148 18 C -0.171 4.171 19 C -0.023 4.023 20 N -0.337 5.337 21 C 0.320 3.680 22 O -0.397 6.397 23 C -0.136 4.136 24 C -0.062 4.062 25 C -0.123 4.123 26 C -0.139 4.139 27 C -0.142 4.142 28 C -0.139 4.139 29 C -0.121 4.121 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.412 5.662 15.551 16.724 hybrid contribution 0.917 -0.204 -0.756 1.206 sum -1.495 5.458 14.795 15.841 Atomic orbital electron populations 1.22087 0.96863 1.00926 1.02184 1.21206 0.93564 0.83785 1.02041 1.48170 1.62401 1.13555 1.08068 1.19455 0.97333 0.92122 0.79478 1.21525 0.98200 1.31083 1.06526 0.91896 1.24951 0.97489 0.94895 0.96475 1.69947 1.34877 1.31736 1.16100 0.86526 0.84230 0.78117 0.79135 1.19577 1.20908 1.20802 1.20474 0.77728 0.87684 0.83611 1.90554 1.56059 1.66919 1.31482 1.21550 0.97160 0.92160 0.87183 0.87803 1.22594 0.90857 0.98873 1.02462 1.22858 0.98182 0.99982 0.96127 1.22337 0.83608 1.00521 0.95798 1.48307 1.05547 1.58295 1.21591 1.20021 0.81637 0.79288 0.87060 1.90750 1.36990 1.53086 1.58909 1.20641 0.94737 1.02130 0.96051 1.19306 0.94366 0.94678 0.97868 1.20975 0.95043 0.97221 0.99091 1.21071 0.94250 0.99389 0.99195 1.21108 0.99620 0.94440 0.99011 1.21086 0.94719 0.97541 1.00510 1.21009 0.94476 0.98159 0.98408 0.92509 0.92641 0.92828 0.90726 0.91283 0.94616 0.94527 0.92563 0.90804 0.87345 0.90328 0.89798 0.90713 0.91289 0.88137 0.88245 0.86274 0.86197 0.86345 0.86214 0.86238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 10.24 37.16 0.38 -2.60 16 2 C 0.12 2.35 6.14 -4.04 -0.02 2.33 16 3 N -0.59 -13.28 2.46 -175.06 -0.43 -13.71 16 4 C 0.24 5.75 4.95 -5.19 -0.03 5.72 16 5 C -0.53 -13.37 8.16 -34.44 -0.28 -13.65 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -24.12 13.29 55.43 0.74 -23.38 16 9 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 13 C 0.52 11.58 6.01 -10.99 -0.07 11.51 16 14 O -0.57 -13.72 15.97 5.56 0.09 -13.63 16 15 C 0.13 2.44 2.64 -68.10 -0.18 2.26 16 16 H 0.10 2.25 5.98 -51.93 -0.31 1.94 16 17 C -0.11 -1.81 6.09 -24.76 -0.15 -1.96 16 18 C -0.13 -1.59 7.09 -24.45 -0.17 -1.76 16 19 C 0.10 1.21 6.69 -2.53 -0.02 1.19 16 20 N -0.60 -10.13 2.76 -164.32 -0.45 -10.58 16 21 C 0.53 9.41 7.41 -10.99 -0.08 9.32 16 22 O -0.52 -11.67 15.87 5.56 0.09 -11.58 16 23 C -0.10 -1.21 4.84 -29.03 -0.14 -1.35 16 24 C -0.06 -0.84 4.37 -104.63 -0.46 -1.30 16 25 C -0.11 -1.35 9.70 -39.59 -0.38 -1.73 16 26 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 27 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 28 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 29 C -0.10 -1.38 9.70 -39.58 -0.38 -1.77 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.44 8.11 -51.93 -0.42 1.01 16 34 H 0.07 1.38 7.36 -51.93 -0.38 0.99 16 35 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.04 0.95 5.93 -51.93 -0.31 0.64 16 37 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.07 1.25 7.84 -51.93 -0.41 0.84 16 39 H 0.11 1.94 7.32 -51.93 -0.38 1.56 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 45 H 0.10 0.96 7.79 -51.93 -0.40 0.56 16 46 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 47 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 48 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 50 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 410.04 15.07 6.18 6.18 Total: -1.00 -33.07 410.04 -10.12 -43.19 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.04 Total: 6.49 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -3.28 Total: 2.31 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.15 Total: -47.68 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.18 Total: -25.20 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.07 -10.12 -43.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133467357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.718 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds