Wall clock time and date at job start Wed Apr 1 2020 04:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46725 * 2 1 4 4 C 1.46506 * 120.00109 * 274.58349 * 3 2 1 5 5 C 1.50697 * 109.46979 * 270.00326 * 4 3 2 6 6 H 1.07996 * 120.00619 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99923 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99847 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00302 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46825 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47250 * 120.00436 * 9 7 5 12 12 H 1.48504 * 109.47231 * 240.00280 * 9 7 5 13 13 C 1.34776 * 119.99922 * 94.58893 * 3 2 1 14 14 O 1.21280 * 120.00444 * 354.88480 * 13 3 2 15 15 C 1.50700 * 119.99920 * 175.15947 * 13 3 2 16 16 H 1.08998 * 109.87699 * 33.79725 * 15 13 3 17 17 C 1.54334 * 109.88335 * 272.78786 * 15 13 3 18 18 C 1.55397 * 102.82722 * 218.48369 * 17 15 13 19 19 C 1.54908 * 101.66848 * 35.33776 * 18 17 15 20 20 N 1.47025 * 109.88425 * 154.82166 * 15 13 3 21 21 C 1.34770 * 125.64630 * 298.32460 * 20 15 13 22 22 O 1.21282 * 120.00014 * 359.97438 * 21 20 15 23 23 C 1.50700 * 119.99970 * 180.02562 * 21 20 15 24 24 C 1.50701 * 109.47111 * 179.97438 * 23 21 20 25 25 C 1.38228 * 120.00194 * 269.72184 * 24 23 21 26 26 C 1.38231 * 120.00347 * 179.81107 * 25 24 23 27 27 C 1.38236 * 119.99816 * 0.41963 * 26 25 24 28 28 C 1.38240 * 119.99837 * 359.81391 * 27 26 25 29 29 C 1.38234 * 120.00018 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47036 * 55.04281 * 1 2 3 31 31 H 1.08996 * 109.47002 * 175.04024 * 1 2 3 32 32 H 1.08993 * 109.47282 * 295.04801 * 1 2 3 33 33 H 1.09000 * 109.47075 * 240.00244 * 2 1 3 34 34 H 1.09001 * 109.47150 * 119.99534 * 2 1 3 35 35 H 1.08994 * 109.46613 * 30.00278 * 4 3 2 36 36 H 1.08997 * 109.47083 * 150.00346 * 4 3 2 37 37 H 0.97005 * 120.00354 * 179.97438 * 8 7 5 38 38 H 1.08999 * 110.71608 * 336.75862 * 17 15 13 39 39 H 1.09000 * 110.71639 * 100.02562 * 17 15 13 40 40 H 1.09001 * 110.89209 * 277.26314 * 18 17 15 41 41 H 1.09008 * 111.06982 * 153.48686 * 18 17 15 42 42 H 1.08999 * 110.36333 * 204.23772 * 19 18 17 43 43 H 1.08997 * 110.36504 * 81.91631 * 19 18 17 44 44 H 1.09000 * 109.46779 * 299.99390 * 23 21 20 45 45 H 1.09001 * 109.47293 * 59.99272 * 23 21 20 46 46 H 1.08008 * 119.99900 * 359.97438 * 25 24 23 47 47 H 1.07997 * 120.00570 * 180.21414 * 26 25 24 48 48 H 1.07997 * 120.00507 * 179.79062 * 27 26 25 49 49 H 1.08005 * 119.99642 * 179.97438 * 28 27 26 50 50 H 1.08000 * 119.99753 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1668 2.1057 -1.2647 5 6 3.5530 1.8820 -1.8119 6 1 4.2532 1.2620 -1.2720 7 6 3.9271 2.4682 -3.0025 8 7 3.0743 3.2229 -3.6603 9 14 5.6451 2.1904 -3.6812 10 1 6.4050 1.3088 -2.7590 11 1 5.5519 1.5468 -5.0162 12 1 6.3440 3.4946 -3.8082 13 6 2.3309 1.9855 1.1635 14 8 2.1211 1.4204 2.2159 15 6 2.9355 3.3659 1.1570 16 1 2.5314 3.9435 0.3256 17 6 4.4703 3.2661 1.0296 18 6 4.9689 4.3979 1.9704 19 6 3.9165 4.3477 3.1060 20 7 2.6430 4.0458 2.4273 21 6 1.4143 4.3443 2.8937 22 8 0.4319 4.0481 2.2473 23 6 1.2613 5.0472 4.2179 24 6 -0.2021 5.2628 4.5060 25 6 -0.8255 6.4231 4.0865 26 6 -2.1688 6.6191 4.3473 27 6 -2.8867 5.6588 5.0352 28 6 -2.2621 4.5006 5.4590 29 6 -0.9199 4.3026 5.1943 30 1 -0.3633 0.5888 -0.8423 31 1 -0.3633 -1.0238 -0.0888 32 1 -0.3633 0.4351 0.9309 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.4303 1.7412 -1.9808 36 1 2.0112 3.1709 -1.0937 37 1 3.3375 3.6357 -4.4978 38 1 4.8235 2.2945 1.3749 39 1 4.7846 3.4490 0.0020 40 1 4.9499 5.3622 1.4625 41 1 5.9663 4.1793 2.3521 42 1 3.8577 5.3116 3.6115 43 1 4.1634 3.5597 3.8174 44 1 1.7010 4.4364 5.0064 45 1 1.7694 6.0107 4.1788 46 1 -0.2637 7.1753 3.5527 47 1 -2.6567 7.5241 4.0166 48 1 -3.9353 5.8134 5.2420 49 1 -2.8229 3.7504 5.9968 50 1 -0.4319 3.3979 5.5257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133467357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:24 Heat of formation + Delta-G solvation = -62.043049 kcal Electronic energy + Delta-G solvation = -31292.446692 eV Core-core repulsion = 27283.646913 eV Total energy + Delta-G solvation = -4008.799779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78566 -40.51607 -39.54586 -38.11281 -36.93254 -34.72989 -33.98617 -32.68792 -32.26990 -31.77605 -30.22192 -28.94316 -28.42469 -25.34194 -25.01695 -24.03215 -23.48520 -22.59300 -22.16308 -20.82988 -19.49173 -18.59947 -18.46809 -18.14639 -17.69321 -17.11248 -16.83418 -16.45145 -16.38318 -15.97671 -15.83815 -15.47629 -15.21385 -14.79715 -14.54296 -14.37158 -14.27960 -14.19910 -13.95096 -13.84124 -13.63244 -13.46746 -13.33855 -13.19765 -13.08616 -12.92953 -12.75432 -12.65051 -12.46828 -12.23262 -12.12094 -11.95104 -11.88149 -11.88050 -11.75347 -11.61661 -10.98349 -10.85241 -10.58784 -9.80636 -9.64083 -9.61154 -9.50279 -8.18245 -6.33772 0.40276 0.51486 1.43127 1.46485 1.54302 1.57444 1.71867 1.98299 2.35909 2.49000 2.90301 3.11663 3.49989 3.61524 3.70474 3.78039 3.92014 4.01215 4.08968 4.14905 4.20309 4.25146 4.26643 4.30372 4.36545 4.45532 4.49921 4.56492 4.64244 4.71969 4.74769 4.77277 4.84764 4.86938 4.95919 4.97213 5.10635 5.11593 5.14768 5.15448 5.22784 5.29561 5.34388 5.55410 5.60989 5.66852 5.66892 5.81936 6.03825 6.12361 6.51347 6.56672 6.80454 7.16734 7.28670 7.40256 8.88513 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.003281 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.196285 B = 8531.117247 C = 9177.277407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.111 3.889 3 N -0.600 5.600 4 C 0.255 3.745 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.021 3.979 8 N -0.924 5.924 9 Si 0.960 3.040 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.511 3.489 14 O -0.591 6.591 15 C 0.125 3.875 16 H 0.071 0.929 17 C -0.108 4.108 18 C -0.119 4.119 19 C 0.094 3.906 20 N -0.605 5.605 21 C 0.521 3.479 22 O -0.583 6.583 23 C -0.083 4.083 24 C -0.082 4.082 25 C -0.121 4.121 26 C -0.129 4.129 27 C -0.129 4.129 28 C -0.131 4.131 29 C -0.125 4.125 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.013 0.987 36 H 0.015 0.985 37 H 0.267 0.733 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.135 0.865 46 H 0.131 0.869 47 H 0.143 0.857 48 H 0.145 0.855 49 H 0.138 0.862 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 6.844 16.986 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 N -0.330 5.330 4 C 0.134 3.866 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.179 4.179 8 N -0.563 5.563 9 Si 0.785 3.215 10 H -0.187 1.187 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.300 3.700 14 O -0.473 6.473 15 C 0.018 3.982 16 H 0.089 0.911 17 C -0.146 4.146 18 C -0.157 4.157 19 C -0.026 4.026 20 N -0.339 5.339 21 C 0.311 3.689 22 O -0.462 6.462 23 C -0.122 4.122 24 C -0.083 4.083 25 C -0.139 4.139 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.149 4.149 29 C -0.143 4.143 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.096 0.904 44 H 0.139 0.861 45 H 0.153 0.847 46 H 0.149 0.851 47 H 0.161 0.839 48 H 0.162 0.838 49 H 0.156 0.844 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.699 6.514 17.046 18.262 hybrid contribution 0.298 -0.500 -1.211 1.344 sum -0.401 6.015 15.835 16.943 Atomic orbital electron populations 1.21985 0.95600 1.02852 1.00433 1.21382 0.94636 0.82734 1.02390 1.48263 1.62684 1.14437 1.07615 1.19069 0.96786 0.90970 0.79742 1.21575 0.98090 1.30871 1.06605 0.91976 1.25712 1.01199 0.94390 0.96615 1.70065 1.36938 1.32712 1.16592 0.85474 0.79614 0.78298 0.78141 1.18687 1.21053 1.19966 1.21044 0.77200 0.88731 0.83072 1.90517 1.57045 1.67840 1.31899 1.21421 0.98757 0.90025 0.87991 0.91095 1.22529 0.88731 1.00631 1.02728 1.22904 0.99679 0.98324 0.94760 1.22712 0.81088 1.03072 0.95772 1.48539 1.07211 1.57277 1.20830 1.21041 0.80985 0.78623 0.88212 1.90713 1.39014 1.55588 1.60890 1.20675 0.94920 1.03477 0.93164 1.19532 0.95143 0.95169 0.98419 1.21259 0.95867 0.97455 0.99270 1.21446 0.94109 1.00364 0.98784 1.21480 1.00931 0.93941 0.98289 1.21403 0.94507 0.98422 1.00602 1.21211 0.95428 0.98361 0.99345 0.93655 0.88910 0.94947 0.89965 0.91141 0.96865 0.96723 0.92381 0.91459 0.89213 0.89368 0.86377 0.86407 0.90445 0.86122 0.84692 0.85118 0.83926 0.83768 0.84435 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 10.24 71.98 0.74 -4.91 16 2 C 0.11 4.57 6.14 86.38 0.53 5.10 16 3 N -0.60 -28.14 2.46 -826.15 -2.03 -30.17 16 4 C 0.26 13.08 4.95 85.63 0.42 13.50 16 5 C -0.53 -27.26 8.16 25.60 0.21 -27.05 16 6 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 7 C 0.02 1.08 5.46 84.65 0.46 1.54 16 8 N -0.92 -51.23 13.29 21.45 0.28 -50.94 16 9 Si 0.96 40.33 29.54 68.60 2.03 42.35 16 10 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 C 0.51 23.74 6.01 87.66 0.53 24.26 16 14 O -0.59 -29.25 15.97 -3.03 -0.05 -29.29 16 15 C 0.13 5.03 2.64 44.60 0.12 5.15 16 16 H 0.07 3.30 5.98 -2.39 -0.01 3.28 16 17 C -0.11 -3.53 6.09 31.87 0.19 -3.33 16 18 C -0.12 -2.50 7.09 32.07 0.23 -2.27 16 19 C 0.09 2.00 6.69 86.86 0.58 2.58 16 20 N -0.60 -20.09 2.76 -792.18 -2.18 -22.27 16 21 C 0.52 18.49 7.41 87.66 0.65 19.14 16 22 O -0.58 -27.22 15.87 -3.04 -0.05 -27.26 16 23 C -0.08 -1.97 4.84 29.10 0.14 -1.83 16 24 C -0.08 -2.21 4.37 -19.87 -0.09 -2.29 16 25 C -0.12 -2.99 9.70 22.27 0.22 -2.78 16 26 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 27 C -0.13 -2.78 10.05 22.27 0.22 -2.55 16 28 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 29 C -0.13 -3.39 9.70 22.27 0.22 -3.18 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.08 3.21 8.11 -2.39 -0.02 3.19 16 34 H 0.07 2.86 7.36 -2.39 -0.02 2.84 16 35 H 0.01 0.73 8.07 -2.39 -0.02 0.71 16 36 H 0.01 0.82 5.93 -2.39 -0.01 0.81 16 37 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 38 H 0.07 2.26 7.84 -2.39 -0.02 2.25 16 39 H 0.09 3.25 7.32 -2.39 -0.02 3.24 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.12 1.53 7.48 -2.39 -0.02 1.51 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.12 2.35 8.09 -2.39 -0.02 2.33 16 45 H 0.14 2.17 7.79 -2.39 -0.02 2.15 16 46 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 47 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 48 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 49 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 50 H 0.12 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -76.04 410.04 4.74 -71.30 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.92 Total: 30.75 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 5.82 Total: 15.54 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -3.93 Total: -103.38 kcal Atomic # 8 Polarization: -56.46 SS G_CDS: -0.10 Total: -56.56 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.35 kcal Total: -76.04 4.74 -71.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133467357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.259 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds