Wall clock time and date at job start Wed Apr 1 2020 04:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46820 * 2 1 4 4 C 1.46499 * 119.99722 * 267.80992 * 3 2 1 5 5 C 1.50708 * 109.46904 * 269.99888 * 4 3 2 6 6 H 1.07998 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99912 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00117 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99919 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46897 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46730 * 120.00127 * 9 7 5 12 12 H 1.48497 * 109.46959 * 239.99805 * 9 7 5 13 13 C 1.34771 * 120.00354 * 87.80708 * 3 2 1 14 14 O 1.21274 * 120.00343 * 184.92945 * 13 3 2 15 15 C 1.50701 * 119.99970 * 4.92709 * 13 3 2 16 16 H 1.09000 * 109.87225 * 325.81032 * 15 13 3 17 17 C 1.54323 * 109.88151 * 86.82675 * 15 13 3 18 18 C 1.55151 * 102.94341 * 97.38353 * 17 15 13 19 19 C 1.54908 * 101.58225 * 35.50068 * 18 17 15 20 20 N 1.47286 * 109.98930 * 204.73961 * 15 13 3 21 21 C 1.34784 * 125.79250 * 59.42676 * 20 15 13 22 22 O 1.21286 * 119.99621 * 0.02620 * 21 20 15 23 23 C 1.50693 * 119.99939 * 180.02562 * 21 20 15 24 24 C 1.50699 * 109.46997 * 180.02562 * 23 21 20 25 25 C 1.38242 * 120.00052 * 269.72435 * 24 23 21 26 26 C 1.38233 * 119.99936 * 179.76306 * 25 24 23 27 27 C 1.38241 * 120.00095 * 0.48888 * 26 25 24 28 28 C 1.38237 * 119.99633 * 359.79008 * 27 26 25 29 29 C 1.38225 * 120.00387 * 359.95105 * 28 27 26 30 30 H 1.08997 * 109.47336 * 60.00333 * 1 2 3 31 31 H 1.09006 * 109.46780 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47346 * 300.00238 * 1 2 3 33 33 H 1.08992 * 109.47282 * 240.00082 * 2 1 3 34 34 H 1.08997 * 109.47336 * 119.99667 * 2 1 3 35 35 H 1.08999 * 109.47316 * 29.99479 * 4 3 2 36 36 H 1.09003 * 109.47322 * 150.00117 * 4 3 2 37 37 H 0.96999 * 119.99924 * 180.02562 * 8 7 5 38 38 H 1.08994 * 110.72134 * 339.01602 * 17 15 13 39 39 H 1.09004 * 110.86916 * 215.81382 * 17 15 13 40 40 H 1.09001 * 111.00068 * 277.42483 * 18 17 15 41 41 H 1.09001 * 111.00759 * 153.57670 * 18 17 15 42 42 H 1.08998 * 110.37005 * 81.83143 * 19 18 17 43 43 H 1.09006 * 110.36766 * 204.04611 * 19 18 17 44 44 H 1.08999 * 109.47319 * 299.99640 * 23 21 20 45 45 H 1.08998 * 109.47203 * 60.00099 * 23 21 20 46 46 H 1.07998 * 119.99356 * 0.02562 * 25 24 23 47 47 H 1.08004 * 119.99891 * 180.25001 * 26 25 24 48 48 H 1.07996 * 119.99904 * 179.76276 * 27 26 25 49 49 H 1.08002 * 119.99723 * 179.97438 * 28 27 26 50 50 H 1.08000 * 120.00475 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3081 2.0557 -1.2678 5 6 3.7462 1.8137 -1.6482 6 1 4.3808 1.2176 -1.0092 7 6 4.2519 2.3543 -2.8114 8 7 3.4795 3.0814 -3.5888 9 14 6.0346 2.0549 -3.2826 10 1 6.6851 1.2118 -2.2476 11 1 6.0899 1.3596 -4.5935 12 1 6.7454 3.3550 -3.3814 13 6 2.2008 2.0316 1.1663 14 8 2.5187 3.2019 1.1647 15 6 2.0097 1.3044 2.4723 16 1 1.2121 0.5681 2.3732 17 6 3.3230 0.6041 2.8801 18 6 3.9565 1.6081 3.8790 19 6 2.7019 2.1705 4.5926 20 7 1.6754 2.2640 3.5386 21 6 0.6103 3.0898 3.5504 22 8 -0.1738 3.0814 2.6252 23 6 0.3937 4.0235 4.7133 24 6 -0.8575 4.8312 4.4826 25 6 -0.7849 6.0458 3.8264 26 6 -1.9333 6.7844 3.6105 27 6 -3.1528 6.3132 4.0597 28 6 -3.2245 5.1014 4.7209 29 6 -2.0770 4.3603 4.9321 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6551 1.6617 -2.0466 36 1 2.1367 3.1265 -1.1573 37 1 3.8352 3.4614 -4.4073 38 1 3.9692 0.4619 2.0141 39 1 3.1194 -0.3490 3.3683 40 1 4.4931 2.3972 3.3523 41 1 4.6111 1.0967 4.5848 42 1 2.3764 1.4906 5.3799 43 1 2.9112 3.1569 5.0068 44 1 0.2874 3.4435 5.6300 45 1 1.2480 4.6943 4.8046 46 1 0.1684 6.4156 3.4788 47 1 -1.8771 7.7315 3.0943 48 1 -4.0494 6.8921 3.8944 49 1 -4.1772 4.7334 5.0722 50 1 -2.1329 3.4137 5.4490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133467578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:27 Heat of formation + Delta-G solvation = -64.851871 kcal Electronic energy + Delta-G solvation = -31144.177957 eV Core-core repulsion = 27135.256378 eV Total energy + Delta-G solvation = -4008.921579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.80582 -40.49889 -39.50407 -38.09429 -36.94552 -34.96191 -33.97809 -32.58341 -31.79140 -31.78728 -30.84876 -28.90718 -28.38899 -25.51065 -24.66433 -24.15556 -23.50277 -22.63436 -22.30002 -20.77647 -19.59414 -18.64227 -18.35087 -18.16156 -17.70549 -17.28554 -16.69821 -16.57249 -16.21596 -16.11743 -15.75366 -15.48046 -15.12264 -14.83807 -14.58220 -14.42145 -14.30607 -14.14829 -13.96418 -13.88219 -13.75429 -13.52240 -13.31542 -13.29719 -13.11596 -12.96303 -12.73477 -12.58266 -12.29655 -12.23794 -12.18684 -12.01354 -11.95468 -11.90571 -11.87658 -11.71342 -10.98861 -10.70924 -10.69042 -9.82309 -9.66643 -9.62367 -9.44436 -8.24852 -6.41708 0.38787 0.49820 1.34156 1.37064 1.49357 1.55200 1.76991 2.03318 2.31371 2.46582 2.88700 3.03957 3.45454 3.60662 3.66276 3.68046 3.90724 3.95951 4.04930 4.08862 4.13406 4.24902 4.27305 4.33547 4.36036 4.48898 4.52255 4.54354 4.62480 4.72323 4.75003 4.79065 4.83155 4.88854 4.92002 4.98804 5.04524 5.09523 5.13624 5.15367 5.23596 5.30556 5.34317 5.53838 5.54508 5.59707 5.65183 5.83275 6.01760 6.10991 6.50182 6.66842 6.77828 7.17950 7.25144 7.47590 8.83092 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003212 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.699569 B = 8716.531867 C = 9487.130920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.266 3.734 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.976 3.024 10 H -0.259 1.259 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.498 3.502 14 O -0.593 6.593 15 C 0.120 3.880 16 H 0.103 0.897 17 C -0.116 4.116 18 C -0.129 4.129 19 C 0.096 3.904 20 N -0.606 5.606 21 C 0.522 3.478 22 O -0.579 6.579 23 C -0.085 4.085 24 C -0.082 4.082 25 C -0.131 4.131 26 C -0.135 4.135 27 C -0.129 4.129 28 C -0.127 4.127 29 C -0.115 4.115 30 H 0.031 0.969 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.013 0.987 36 H -0.017 1.017 37 H 0.267 0.733 38 H 0.067 0.933 39 H 0.134 0.866 40 H 0.045 0.955 41 H 0.130 0.870 42 H 0.117 0.883 43 H 0.089 0.911 44 H 0.142 0.858 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.131 0.869 48 H 0.144 0.856 49 H 0.148 0.852 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.375 -6.046 24.789 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.021 4.021 3 N -0.336 5.336 4 C 0.145 3.855 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.799 3.201 10 H -0.183 1.183 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.286 3.714 14 O -0.474 6.474 15 C 0.013 3.987 16 H 0.121 0.879 17 C -0.154 4.154 18 C -0.167 4.167 19 C -0.025 4.025 20 N -0.341 5.341 21 C 0.312 3.688 22 O -0.458 6.458 23 C -0.124 4.124 24 C -0.082 4.082 25 C -0.150 4.150 26 C -0.153 4.153 27 C -0.147 4.147 28 C -0.144 4.144 29 C -0.133 4.133 30 H 0.051 0.949 31 H 0.121 0.879 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.031 0.969 36 H 0.001 0.999 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.152 0.848 40 H 0.063 0.937 41 H 0.148 0.852 42 H 0.135 0.865 43 H 0.108 0.892 44 H 0.160 0.840 45 H 0.130 0.870 46 H 0.126 0.874 47 H 0.149 0.851 48 H 0.162 0.838 49 H 0.166 0.834 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.709 -5.305 24.138 25.608 hybrid contribution 0.709 0.748 -1.596 1.899 sum -6.001 -4.557 22.542 23.768 Atomic orbital electron populations 1.22150 0.95516 1.03325 1.00815 1.21754 0.94543 0.81547 1.04259 1.48234 1.63881 1.15160 1.06327 1.18624 0.95449 0.91048 0.80421 1.21706 0.96613 1.32666 1.06700 0.92141 1.26009 1.03232 0.94326 0.96086 1.70109 1.38269 1.34855 1.14030 0.85249 0.78217 0.78031 0.78582 1.18308 1.19393 1.20888 1.21512 0.76168 0.87004 0.86715 1.90582 1.49943 1.18854 1.88007 1.21764 1.01247 0.90876 0.84852 0.87908 1.22703 0.91915 1.00210 1.00582 1.22832 0.97258 0.98203 0.98382 1.22750 0.86211 1.03571 0.89926 1.48558 1.25567 1.38813 1.21120 1.20953 0.79512 0.79933 0.88385 1.90730 1.46847 1.68901 1.39274 1.20671 0.97435 0.97095 0.97166 1.19547 0.95177 0.94581 0.98924 1.21206 0.99043 0.95800 0.98904 1.21379 0.92992 1.00695 1.00255 1.21476 0.97952 0.97025 0.98227 1.21476 0.99120 0.94883 0.98948 1.21271 0.91813 1.00052 1.00114 0.94929 0.87901 0.93813 0.90157 0.87840 0.96894 0.99932 0.92450 0.91442 0.84825 0.93653 0.85152 0.86508 0.89247 0.84006 0.87006 0.87384 0.85110 0.83844 0.83434 0.84214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 10.07 71.98 0.72 -4.31 16 2 C 0.10 3.48 5.74 86.38 0.50 3.97 16 3 N -0.60 -28.62 2.46 -826.16 -2.03 -30.65 16 4 C 0.27 15.78 5.19 85.64 0.44 16.23 16 5 C -0.54 -32.29 9.39 25.60 0.24 -32.05 16 6 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 7 C 0.00 0.11 5.46 84.65 0.46 0.58 16 8 N -0.93 -59.30 13.29 21.45 0.28 -59.01 16 9 Si 0.98 45.78 29.54 68.60 2.03 47.81 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 C 0.50 23.11 5.91 87.66 0.52 23.63 16 14 O -0.59 -34.05 15.90 -3.01 -0.05 -34.10 16 15 C 0.12 3.77 2.40 44.54 0.11 3.87 16 16 H 0.10 2.94 5.88 -2.39 -0.01 2.93 16 17 C -0.12 -2.53 6.03 31.78 0.19 -2.34 16 18 C -0.13 -2.38 7.08 31.98 0.23 -2.16 16 19 C 0.10 1.60 6.68 86.86 0.58 2.18 16 20 N -0.61 -17.22 2.80 -791.55 -2.22 -19.43 16 21 C 0.52 17.14 7.34 87.65 0.64 17.78 16 22 O -0.58 -25.60 15.80 -3.05 -0.05 -25.65 16 23 C -0.08 -1.91 4.84 29.10 0.14 -1.76 16 24 C -0.08 -2.18 4.37 -19.86 -0.09 -2.26 16 25 C -0.13 -3.84 9.70 22.27 0.22 -3.63 16 26 C -0.14 -3.51 10.05 22.27 0.22 -3.29 16 27 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 28 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 29 C -0.11 -2.62 9.70 22.27 0.22 -2.41 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.04 1.47 7.42 -2.38 -0.02 1.46 16 33 H 0.08 2.79 8.05 -2.39 -0.02 2.77 16 34 H 0.10 2.67 6.14 -2.39 -0.01 2.66 16 35 H 0.01 0.80 8.07 -2.39 -0.02 0.78 16 36 H -0.02 -1.22 7.36 -2.39 -0.02 -1.24 16 37 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 38 H 0.07 1.82 7.82 -2.39 -0.02 1.80 16 39 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 1.28 7.47 -2.38 -0.02 1.26 16 44 H 0.14 1.90 8.08 -2.39 -0.02 1.88 16 45 H 0.11 2.26 7.79 -2.39 -0.02 2.24 16 46 H 0.11 3.26 8.06 -2.91 -0.02 3.23 16 47 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 48 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 49 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 50 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -94.72 410.51 4.68 -90.04 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.92 Total: 22.04 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 5.79 Total: 8.96 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -3.96 Total: -109.09 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -0.10 Total: -59.75 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -94.72 4.68 -90.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133467578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.188 kcal (2) G-P(sol) polarization free energy of solvation -94.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds