Wall clock time and date at job start Wed Apr 1 2020 03:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46895 * 109.47155 * 2 1 4 4 C 1.46105 * 110.99983 * 299.57297 * 3 2 1 5 5 C 1.53331 * 110.15320 * 223.67043 * 4 3 2 6 6 C 1.51682 * 112.03635 * 292.84649 * 5 4 3 7 7 H 1.09005 * 109.92160 * 176.69711 * 6 5 4 8 8 C 1.53003 * 111.62494 * 298.94417 * 6 5 4 9 9 C 1.55717 * 103.55845 * 89.88753 * 8 6 5 10 10 C 1.53263 * 105.33606 * 16.39086 * 9 8 6 11 11 H 1.09001 * 109.53054 * 121.15374 * 10 9 8 12 12 C 1.48668 * 111.00254 * 65.16453 * 3 2 1 13 13 N 1.47430 * 109.58578 * 0.59508 * 10 9 8 14 14 C 1.34777 * 127.26531 * 162.03414 * 13 10 9 15 15 O 1.21593 * 120.00145 * 182.48231 * 14 13 10 16 16 C 1.47540 * 120.00106 * 2.48079 * 14 13 10 17 17 C 1.39667 * 120.19805 * 3.43536 * 16 14 13 18 18 C 1.37824 * 119.92051 * 180.02562 * 17 16 14 19 19 C 1.38573 * 120.32479 * 0.02562 * 18 17 16 20 20 C 1.38023 * 120.39827 * 0.02562 * 19 18 17 21 21 C 1.38839 * 120.07620 * 359.68272 * 20 19 18 22 22 O 1.35517 * 120.16192 * 180.29511 * 21 20 19 23 23 C 1.34814 * 117.00467 * 354.31980 * 22 21 20 24 24 H 1.08006 * 119.99720 * 5.06333 * 23 22 21 25 25 C 1.38690 * 120.00403 * 185.05801 * 23 22 21 26 26 N 1.31522 * 120.00216 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 119.99899 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47501 * 89.99462 * 27 25 23 29 29 H 1.48495 * 109.47249 * 209.99762 * 27 25 23 30 30 H 1.48503 * 109.46891 * 329.99513 * 27 25 23 31 31 H 1.09007 * 109.47061 * 64.88855 * 1 2 3 32 32 H 1.09006 * 109.46866 * 184.88256 * 1 2 3 33 33 H 1.08997 * 109.47731 * 304.88254 * 1 2 3 34 34 H 1.09004 * 109.47461 * 239.99694 * 2 1 3 35 35 H 1.09007 * 109.46785 * 119.99736 * 2 1 3 36 36 H 1.09003 * 109.35405 * 343.87920 * 4 3 2 37 37 H 1.09002 * 109.35875 * 103.59864 * 4 3 2 38 38 H 1.09000 * 108.97289 * 53.50938 * 5 4 3 39 39 H 1.09008 * 108.96459 * 172.27424 * 5 4 3 40 40 H 1.09004 * 110.47127 * 208.19095 * 8 6 5 41 41 H 1.08998 * 110.47647 * 330.80380 * 8 6 5 42 42 H 1.09002 * 110.04313 * 257.51492 * 9 8 6 43 43 H 1.09001 * 110.43189 * 135.46730 * 9 8 6 44 44 H 1.08993 * 109.57394 * 295.84821 * 12 3 2 45 45 H 1.09005 * 109.57341 * 56.09888 * 12 3 2 46 46 H 1.08004 * 120.03746 * 359.97438 * 17 16 14 47 47 H 1.08000 * 119.83745 * 179.97438 * 18 17 16 48 48 H 1.07995 * 119.79873 * 180.02562 * 19 18 17 49 49 H 1.08008 * 119.96106 * 179.97438 * 20 19 18 50 50 H 0.96997 * 119.99851 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5595 2.1030 -1.1863 5 6 2.7058 2.9295 -1.7813 6 6 3.1232 4.0649 -0.8663 7 1 3.9758 4.5924 -1.2941 8 6 1.9733 5.0443 -0.6221 9 6 1.2630 4.4665 0.6374 10 6 2.2658 3.4852 1.2540 11 1 2.4935 3.7905 2.2753 12 6 1.6476 2.0816 1.2596 13 7 3.5010 3.4699 0.4492 14 6 4.7134 3.0156 0.8236 15 8 5.6585 3.1082 0.0641 16 6 4.8939 2.4059 2.1549 17 6 3.7976 2.2321 3.0025 18 6 3.9728 1.6624 4.2452 19 6 5.2328 1.2609 4.6594 20 6 6.3256 1.4273 3.8329 21 6 6.1671 1.9938 2.5753 22 8 7.2379 2.1525 1.7601 23 6 8.4475 1.8494 2.2724 24 1 8.5233 1.4209 3.2610 25 6 9.5946 2.0876 1.5301 26 7 10.7747 1.7923 2.0302 27 14 9.4636 2.8292 -0.1793 28 1 9.5181 4.3101 -0.0821 29 1 10.5912 2.3463 -1.0162 30 1 8.1772 2.4209 -0.7988 31 1 -0.3633 0.4361 -0.9306 32 1 -0.3633 -1.0240 0.0875 33 1 -0.3634 0.5877 0.8430 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 1.2077 1.3864 -1.9285 37 1 0.7416 2.7689 -0.9110 38 1 3.5625 2.2772 -1.9501 39 1 2.3841 3.3455 -2.7361 40 1 2.3598 6.0427 -0.4176 41 1 1.3001 5.0632 -1.4792 42 1 0.3524 3.9431 0.3456 43 1 1.0317 5.2642 1.3433 44 1 0.5626 2.1607 1.3264 45 1 2.0261 1.5194 2.1133 46 1 2.8137 2.5446 2.6848 47 1 3.1242 1.5291 4.8997 48 1 5.3603 0.8150 5.6347 49 1 7.3045 1.1121 4.1631 50 1 11.5769 1.9593 1.5111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177777993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:51 Heat of formation + Delta-G solvation = 32.487328 kcal Electronic energy + Delta-G solvation = -32715.777579 eV Core-core repulsion = 28711.076944 eV Total energy + Delta-G solvation = -4004.700634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.06647 -39.16628 -37.52886 -36.55630 -36.21063 -33.55780 -32.36915 -31.50184 -30.80067 -29.88610 -29.14452 -27.02035 -26.41286 -25.23997 -23.63804 -23.08655 -22.05877 -21.51216 -20.58818 -19.56131 -18.85020 -18.00905 -17.19716 -16.71788 -16.10115 -15.84104 -15.14618 -15.09701 -14.77699 -14.41449 -14.23933 -14.08766 -13.88473 -13.69544 -13.51829 -13.40716 -13.20851 -12.87362 -12.55650 -12.37814 -12.28763 -12.20494 -12.08802 -12.00625 -11.71073 -11.56694 -11.40626 -11.35813 -11.08524 -10.93648 -10.86093 -10.63822 -10.60787 -10.31932 -10.13046 -9.93205 -9.50623 -8.88180 -8.81065 -8.26886 -8.20146 -8.10621 -7.36015 -6.39458 -4.04039 1.71690 2.28597 3.28566 3.37699 3.43587 3.72267 3.74063 3.85591 4.39640 4.43257 4.46823 4.55661 4.78594 4.80689 4.84132 4.94724 4.95529 5.02318 5.07868 5.17112 5.19892 5.23892 5.32857 5.35506 5.44974 5.50030 5.52980 5.61284 5.66187 5.70404 5.72698 5.75571 5.79439 5.87210 5.88878 5.94866 6.00792 6.05458 6.14141 6.16646 6.38065 6.48348 6.61279 6.78099 6.96341 7.06124 7.12733 7.17290 7.25359 7.58267 7.77419 8.03601 8.16439 8.96080 9.05272 9.61926 10.65978 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.004456 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.119348 B = 6281.689155 C = 7232.406266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 N -0.525 5.525 4 C 0.061 3.939 5 C -0.123 4.123 6 C 0.138 3.862 7 H 0.083 0.917 8 C -0.124 4.124 9 C -0.129 4.129 10 C 0.116 3.884 11 H 0.099 0.901 12 C 0.022 3.978 13 N -0.596 5.596 14 C 0.595 3.405 15 O -0.522 6.522 16 C -0.208 4.208 17 C -0.089 4.089 18 C -0.226 4.226 19 C -0.053 4.053 20 C -0.230 4.230 21 C 0.200 3.800 22 O -0.168 6.168 23 C -0.395 4.395 24 H 0.107 0.893 25 C 0.071 3.929 26 N -0.873 5.873 27 Si 0.899 3.101 28 H -0.275 1.275 29 H -0.288 1.288 30 H -0.237 1.237 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.045 0.955 45 H 0.098 0.902 46 H 0.160 0.840 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.136 0.864 50 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.359 2.228 -2.704 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.076 4.076 3 N -0.248 5.248 4 C -0.067 4.067 5 C -0.162 4.162 6 C 0.035 3.965 7 H 0.101 0.899 8 C -0.162 4.162 9 C -0.167 4.167 10 C 0.011 3.989 11 H 0.117 0.883 12 C -0.106 4.106 13 N -0.331 5.331 14 C 0.388 3.612 15 O -0.398 6.398 16 C -0.213 4.213 17 C -0.106 4.106 18 C -0.245 4.245 19 C -0.072 4.072 20 C -0.249 4.249 21 C 0.143 3.857 22 O -0.068 6.068 23 C -0.470 4.470 24 H 0.124 0.876 25 C -0.134 4.134 26 N -0.509 5.509 27 Si 0.723 3.277 28 H -0.201 1.201 29 H -0.214 1.214 30 H -0.159 1.159 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.116 0.884 46 H 0.176 0.824 47 H 0.126 0.874 48 H 0.128 0.872 49 H 0.154 0.846 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.874 2.290 -3.412 23.241 hybrid contribution -0.703 0.058 -0.349 0.787 sum -23.577 2.348 -3.761 23.991 Atomic orbital electron populations 1.22484 0.98576 1.02155 1.01678 1.22207 0.92245 0.90070 1.03049 1.61823 1.60330 1.01475 1.01174 1.22009 0.95996 0.96533 0.92187 1.21776 0.99686 0.97501 0.97246 1.21395 0.96941 0.93008 0.85149 0.89855 1.22467 0.97052 0.98773 0.97932 1.22777 0.97748 0.98542 0.97615 1.21918 0.85986 0.94159 0.96869 0.88322 1.23616 0.97552 0.95640 0.93834 1.48554 1.07575 1.63046 1.13936 1.17657 0.79956 0.77058 0.86567 1.90848 1.38502 1.56255 1.54190 1.18759 0.92258 1.13821 0.96443 1.22472 0.99028 0.95818 0.93285 1.20559 0.96901 1.09344 0.97694 1.20944 0.92508 0.95780 0.97966 1.21244 1.00293 1.08037 0.95312 1.19063 0.87068 0.90844 0.88713 1.83791 1.13463 1.72727 1.36840 1.20908 0.79828 1.42413 1.03824 0.87590 1.24470 0.93341 0.95668 0.99882 1.69645 0.97564 1.45225 1.38513 0.86221 0.79379 0.79600 0.82461 1.20068 1.21366 1.15948 0.92841 0.92307 0.92567 0.90814 0.90604 0.92008 0.93411 0.90686 0.91692 0.90794 0.90103 0.90633 0.90502 0.93724 0.88374 0.82402 0.87367 0.87170 0.84643 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 9.40 37.16 0.35 -1.18 16 2 C 0.05 0.55 5.83 -3.83 -0.02 0.53 16 3 N -0.52 -6.34 4.04 -233.31 -0.94 -7.28 16 4 C 0.06 0.64 4.34 -4.08 -0.02 0.62 16 5 C -0.12 -1.51 5.35 -27.23 -0.15 -1.65 16 6 C 0.14 1.84 3.34 -67.08 -0.22 1.62 16 7 H 0.08 1.28 8.00 -51.93 -0.42 0.87 16 8 C -0.12 -1.14 6.26 -25.28 -0.16 -1.30 16 9 C -0.13 -1.09 5.80 -25.15 -0.15 -1.23 16 10 C 0.12 1.34 2.47 -67.09 -0.17 1.18 16 11 H 0.10 1.15 5.74 -51.93 -0.30 0.85 16 12 C 0.02 0.23 4.04 -2.65 -0.01 0.22 16 13 N -0.60 -9.47 2.07 -157.76 -0.33 -9.80 16 14 C 0.59 12.78 7.85 -12.47 -0.10 12.68 16 15 O -0.52 -13.67 15.51 -16.55 -0.26 -13.92 16 16 C -0.21 -4.43 5.89 -104.81 -0.62 -5.05 16 17 C -0.09 -1.48 7.05 -39.20 -0.28 -1.75 16 18 C -0.23 -3.60 10.02 -39.61 -0.40 -4.00 16 19 C -0.05 -0.95 10.03 -39.54 -0.40 -1.35 16 20 C -0.23 -5.04 9.16 -39.44 -0.36 -5.40 16 21 C 0.20 4.93 6.66 -38.60 -0.26 4.67 16 22 O -0.17 -4.78 6.67 -21.02 -0.14 -4.92 16 23 C -0.39 -11.63 9.95 30.90 0.31 -11.32 16 24 H 0.11 3.11 5.44 -52.48 -0.29 2.83 16 25 C 0.07 2.11 5.49 -17.52 -0.10 2.01 16 26 N -0.87 -26.01 13.96 55.48 0.77 -25.23 16 27 Si 0.90 23.91 28.62 -169.99 -4.86 19.05 16 28 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 30 H -0.24 -6.68 7.11 56.52 0.40 -6.28 16 31 H 0.05 0.41 6.97 -51.93 -0.36 0.05 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.44 6.40 -51.93 -0.33 0.11 16 34 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 36 H 0.06 0.60 6.89 -51.93 -0.36 0.24 16 37 H 0.05 0.43 4.92 -51.93 -0.26 0.17 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.59 7.95 -51.93 -0.41 0.18 16 42 H 0.08 0.54 5.68 -51.93 -0.29 0.24 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.04 0.38 5.81 -51.93 -0.30 0.08 16 45 H 0.10 1.15 5.25 -51.93 -0.27 0.87 16 46 H 0.16 2.10 1.61 -53.00 -0.09 2.01 16 47 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 48 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 49 H 0.14 3.09 5.64 -52.48 -0.30 2.80 16 50 H 0.28 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -34.44 368.77 -9.84 -44.27 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.91 Total: 3.00 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.73 Total: -10.71 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.49 Total: -42.32 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.40 Total: -18.85 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -4.86 Total: 19.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.44 -9.84 -44.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177777993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.762 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds