Wall clock time and date at job start Wed Apr 1 2020 03:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46895 * 109.47155 * 2 1 4 4 C 1.46105 * 110.99983 * 299.57297 * 3 2 1 5 5 C 1.53331 * 110.15320 * 223.67043 * 4 3 2 6 6 C 1.51682 * 112.03635 * 292.84649 * 5 4 3 7 7 H 1.09005 * 109.92160 * 176.69711 * 6 5 4 8 8 C 1.53003 * 111.62494 * 298.94417 * 6 5 4 9 9 C 1.55717 * 103.55845 * 89.88753 * 8 6 5 10 10 C 1.53263 * 105.33606 * 16.39086 * 9 8 6 11 11 H 1.09001 * 109.53054 * 121.15374 * 10 9 8 12 12 C 1.48668 * 111.00254 * 65.16453 * 3 2 1 13 13 N 1.47430 * 109.58578 * 0.59508 * 10 9 8 14 14 C 1.34777 * 127.26531 * 162.03414 * 13 10 9 15 15 O 1.21593 * 120.00145 * 182.48231 * 14 13 10 16 16 C 1.47540 * 120.00106 * 2.48079 * 14 13 10 17 17 C 1.39667 * 120.19805 * 3.43536 * 16 14 13 18 18 C 1.37824 * 119.92051 * 180.02562 * 17 16 14 19 19 C 1.38573 * 120.32479 * 0.02562 * 18 17 16 20 20 C 1.38023 * 120.39827 * 0.02562 * 19 18 17 21 21 C 1.38839 * 120.07620 * 359.68272 * 20 19 18 22 22 O 1.35517 * 120.16192 * 180.29511 * 21 20 19 23 23 C 1.34814 * 117.00467 * 354.31980 * 22 21 20 24 24 H 1.08006 * 119.99720 * 5.06333 * 23 22 21 25 25 C 1.38690 * 120.00403 * 185.05801 * 23 22 21 26 26 N 1.31522 * 120.00216 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 119.99899 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47501 * 89.99462 * 27 25 23 29 29 H 1.48495 * 109.47249 * 209.99762 * 27 25 23 30 30 H 1.48503 * 109.46891 * 329.99513 * 27 25 23 31 31 H 1.09007 * 109.47061 * 64.88855 * 1 2 3 32 32 H 1.09006 * 109.46866 * 184.88256 * 1 2 3 33 33 H 1.08997 * 109.47731 * 304.88254 * 1 2 3 34 34 H 1.09004 * 109.47461 * 239.99694 * 2 1 3 35 35 H 1.09007 * 109.46785 * 119.99736 * 2 1 3 36 36 H 1.09003 * 109.35405 * 343.87920 * 4 3 2 37 37 H 1.09002 * 109.35875 * 103.59864 * 4 3 2 38 38 H 1.09000 * 108.97289 * 53.50938 * 5 4 3 39 39 H 1.09008 * 108.96459 * 172.27424 * 5 4 3 40 40 H 1.09004 * 110.47127 * 208.19095 * 8 6 5 41 41 H 1.08998 * 110.47647 * 330.80380 * 8 6 5 42 42 H 1.09002 * 110.04313 * 257.51492 * 9 8 6 43 43 H 1.09001 * 110.43189 * 135.46730 * 9 8 6 44 44 H 1.08993 * 109.57394 * 295.84821 * 12 3 2 45 45 H 1.09005 * 109.57341 * 56.09888 * 12 3 2 46 46 H 1.08004 * 120.03746 * 359.97438 * 17 16 14 47 47 H 1.08000 * 119.83745 * 179.97438 * 18 17 16 48 48 H 1.07995 * 119.79873 * 180.02562 * 19 18 17 49 49 H 1.08008 * 119.96106 * 179.97438 * 20 19 18 50 50 H 0.96997 * 119.99851 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5595 2.1030 -1.1863 5 6 2.7058 2.9295 -1.7813 6 6 3.1232 4.0649 -0.8663 7 1 3.9758 4.5924 -1.2941 8 6 1.9733 5.0443 -0.6221 9 6 1.2630 4.4665 0.6374 10 6 2.2658 3.4852 1.2540 11 1 2.4935 3.7905 2.2753 12 6 1.6476 2.0816 1.2596 13 7 3.5010 3.4699 0.4492 14 6 4.7134 3.0156 0.8236 15 8 5.6585 3.1082 0.0641 16 6 4.8939 2.4059 2.1549 17 6 3.7976 2.2321 3.0025 18 6 3.9728 1.6624 4.2452 19 6 5.2328 1.2609 4.6594 20 6 6.3256 1.4273 3.8329 21 6 6.1671 1.9938 2.5753 22 8 7.2379 2.1525 1.7601 23 6 8.4475 1.8494 2.2724 24 1 8.5233 1.4209 3.2610 25 6 9.5946 2.0876 1.5301 26 7 10.7747 1.7923 2.0302 27 14 9.4636 2.8292 -0.1793 28 1 9.5181 4.3101 -0.0821 29 1 10.5912 2.3463 -1.0162 30 1 8.1772 2.4209 -0.7988 31 1 -0.3633 0.4361 -0.9306 32 1 -0.3633 -1.0240 0.0875 33 1 -0.3634 0.5877 0.8430 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 1.2077 1.3864 -1.9285 37 1 0.7416 2.7689 -0.9110 38 1 3.5625 2.2772 -1.9501 39 1 2.3841 3.3455 -2.7361 40 1 2.3598 6.0427 -0.4176 41 1 1.3001 5.0632 -1.4792 42 1 0.3524 3.9431 0.3456 43 1 1.0317 5.2642 1.3433 44 1 0.5626 2.1607 1.3264 45 1 2.0261 1.5194 2.1133 46 1 2.8137 2.5446 2.6848 47 1 3.1242 1.5291 4.8997 48 1 5.3603 0.8150 5.6347 49 1 7.3045 1.1121 4.1631 50 1 11.5769 1.9593 1.5111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177777993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:50 Heat of formation + Delta-G solvation = 9.729039 kcal Electronic energy + Delta-G solvation = -32716.764452 eV Core-core repulsion = 28711.076944 eV Total energy + Delta-G solvation = -4005.687508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21307 -40.79382 -39.04249 -38.23053 -37.25229 -34.69558 -34.50049 -32.66842 -31.71233 -31.24357 -30.75331 -27.88541 -27.42978 -27.22395 -24.91680 -24.03227 -23.51860 -22.67178 -21.85510 -20.51451 -20.17130 -19.90564 -18.74627 -18.23594 -17.18812 -16.98888 -16.75024 -16.24198 -16.00637 -15.94673 -15.77421 -15.65096 -15.15207 -14.95392 -14.80957 -14.67455 -14.42634 -14.16667 -14.10857 -13.81210 -13.50533 -13.34380 -13.16840 -13.12233 -12.94496 -12.75998 -12.64165 -12.61151 -12.51495 -12.19991 -12.08069 -11.83298 -11.71731 -11.65689 -11.53296 -11.33982 -10.99346 -10.97554 -10.55618 -9.84630 -9.47882 -9.08331 -8.96169 -8.59500 -6.27083 0.12188 0.66466 1.19701 1.25538 1.55616 2.02202 2.15715 2.28396 2.75334 2.97591 3.05939 3.18995 3.55766 3.59034 3.88008 3.95880 3.97145 4.04694 4.16538 4.17078 4.21279 4.28059 4.33492 4.39069 4.48201 4.53074 4.56594 4.59886 4.64777 4.72464 4.75005 4.84408 4.85193 4.95506 5.01677 5.03798 5.07566 5.09768 5.12767 5.16298 5.26098 5.30205 5.36279 5.45169 5.49861 5.57796 5.66748 5.72947 5.85485 6.18880 6.25492 6.35571 6.75559 6.79595 7.47091 7.61583 8.51416 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.004456 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.119348 B = 6281.689155 C = 7232.406266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.054 3.946 3 N -0.561 5.561 4 C 0.068 3.932 5 C -0.119 4.119 6 C 0.128 3.872 7 H 0.045 0.955 8 C -0.114 4.114 9 C -0.117 4.117 10 C 0.100 3.900 11 H 0.104 0.896 12 C 0.023 3.977 13 N -0.589 5.589 14 C 0.581 3.419 15 O -0.589 6.589 16 C -0.217 4.217 17 C -0.079 4.079 18 C -0.192 4.192 19 C -0.046 4.046 20 C -0.253 4.253 21 C 0.156 3.844 22 O -0.213 6.213 23 C -0.401 4.401 24 H 0.091 0.909 25 C 0.028 3.972 26 N -0.912 5.912 27 Si 0.954 3.046 28 H -0.276 1.276 29 H -0.263 1.263 30 H -0.272 1.272 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.021 0.979 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.202 0.798 47 H 0.168 0.832 48 H 0.150 0.850 49 H 0.112 0.888 50 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.179 3.028 -1.368 31.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.074 4.074 3 N -0.285 5.285 4 C -0.060 4.060 5 C -0.158 4.158 6 C 0.025 3.975 7 H 0.063 0.937 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.004 4.004 11 H 0.122 0.878 12 C -0.104 4.104 13 N -0.322 5.322 14 C 0.374 3.626 15 O -0.470 6.470 16 C -0.221 4.221 17 C -0.095 4.095 18 C -0.210 4.210 19 C -0.064 4.064 20 C -0.272 4.272 21 C 0.103 3.897 22 O -0.117 6.117 23 C -0.478 4.478 24 H 0.108 0.892 25 C -0.172 4.172 26 N -0.552 5.552 27 Si 0.779 3.221 28 H -0.202 1.202 29 H -0.187 1.187 30 H -0.197 1.197 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.218 0.782 47 H 0.185 0.815 48 H 0.167 0.833 49 H 0.130 0.870 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.800 3.097 -2.047 30.030 hybrid contribution 0.964 -0.214 -0.610 1.160 sum -28.836 2.883 -2.657 29.101 Atomic orbital electron populations 1.22363 0.95884 1.02915 1.02508 1.22133 0.94371 0.89080 1.01838 1.61703 1.62102 1.02452 1.02289 1.21973 0.95389 0.96766 0.91833 1.21748 0.98779 0.96648 0.98638 1.21706 0.97523 0.94137 0.84108 0.93698 1.22469 0.95567 0.97212 0.99911 1.22809 0.97131 0.98404 0.97108 1.22360 0.84803 0.96383 0.96840 0.87820 1.23593 0.99712 0.94213 0.92894 1.48501 1.07342 1.60646 1.15684 1.17853 0.81084 0.77286 0.86372 1.90810 1.41271 1.59064 1.55857 1.19222 0.92334 1.13225 0.97359 1.23108 0.99283 0.94372 0.92762 1.21287 0.97652 1.04737 0.97319 1.21427 0.91852 0.94456 0.98672 1.21292 1.01161 1.09270 0.95474 1.19833 0.87531 0.92336 0.89966 1.83788 1.13565 1.76158 1.38221 1.20901 0.81148 1.42333 1.03377 0.89173 1.24984 0.93363 0.96697 1.02202 1.69680 0.97893 1.47921 1.39690 0.85440 0.77995 0.78767 0.79946 1.20185 1.18740 1.19721 0.92100 0.91752 0.91369 0.92290 0.91801 0.91192 0.90279 0.95974 0.89032 0.90751 0.86963 0.87743 0.88003 0.89659 0.89304 0.78211 0.81460 0.83271 0.86973 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.40 71.98 0.68 -1.38 16 2 C 0.05 1.01 5.83 86.30 0.50 1.51 16 3 N -0.56 -12.09 4.04 -892.06 -3.60 -15.70 16 4 C 0.07 1.20 4.34 86.56 0.38 1.57 16 5 C -0.12 -2.85 5.35 30.27 0.16 -2.69 16 6 C 0.13 3.34 3.34 44.03 0.15 3.49 16 7 H 0.04 1.49 8.00 -2.38 -0.02 1.47 16 8 C -0.11 -1.63 6.26 31.53 0.20 -1.43 16 9 C -0.12 -1.23 5.80 31.62 0.18 -1.05 16 10 C 0.10 1.88 2.47 45.03 0.11 1.99 16 11 H 0.10 1.87 5.74 -2.39 -0.01 1.86 16 12 C 0.02 0.38 4.04 86.08 0.35 0.73 16 13 N -0.59 -18.47 2.07 -771.28 -1.59 -20.06 16 14 C 0.58 26.27 7.85 86.70 0.68 26.95 16 15 O -0.59 -33.80 15.51 16.86 0.26 -33.54 16 16 C -0.22 -9.43 5.89 -19.99 -0.12 -9.54 16 17 C -0.08 -2.36 7.05 22.52 0.16 -2.20 16 18 C -0.19 -5.11 10.02 22.25 0.22 -4.89 16 19 C -0.05 -1.51 10.03 22.30 0.22 -1.28 16 20 C -0.25 -11.52 9.16 22.36 0.20 -11.32 16 21 C 0.16 8.16 6.66 22.91 0.15 8.32 16 22 O -0.21 -13.28 6.67 0.85 0.01 -13.27 16 23 C -0.40 -25.84 9.95 67.93 0.68 -25.17 16 24 H 0.09 5.85 5.44 -2.91 -0.02 5.83 16 25 C 0.03 1.75 5.49 84.85 0.47 2.22 16 26 N -0.91 -57.80 13.96 21.62 0.30 -57.50 16 27 Si 0.95 53.78 28.62 68.60 1.96 55.74 16 28 H -0.28 -15.29 7.11 99.48 0.71 -14.59 16 29 H -0.26 -13.44 7.11 99.48 0.71 -12.74 16 30 H -0.27 -16.82 7.11 99.48 0.71 -16.11 16 31 H 0.06 0.64 6.97 -2.38 -0.02 0.62 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.68 16 33 H 0.07 0.64 6.40 -2.39 -0.02 0.62 16 34 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 35 H 0.06 1.32 8.12 -2.38 -0.02 1.30 16 36 H 0.07 1.13 6.89 -2.39 -0.02 1.12 16 37 H 0.08 0.91 4.92 -2.39 -0.01 0.89 16 38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.11 0.99 7.95 -2.39 -0.02 0.97 16 42 H 0.10 0.59 5.68 -2.39 -0.01 0.58 16 43 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.09 0.78 5.81 -2.39 -0.01 0.77 16 45 H 0.09 1.60 5.25 -2.38 -0.01 1.59 16 46 H 0.20 4.32 1.61 -3.39 -0.01 4.31 16 47 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 48 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 49 H 0.11 5.56 5.64 -2.91 -0.02 5.55 16 50 H 0.29 16.65 8.31 -92.71 -0.77 15.88 16 Total: -1.00 -89.78 368.77 3.69 -86.09 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.98 Total: 12.41 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 5.37 Total: -14.17 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -4.89 Total: -93.26 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: 0.27 Total: -46.82 kcal Atomic # 14 Polarization: 53.78 SS G_CDS: 1.96 Total: 55.74 kcal Total: -89.78 3.69 -86.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177777993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.820 kcal (2) G-P(sol) polarization free energy of solvation -89.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds