Wall clock time and date at job start Wed Apr 1 2020 04:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00061 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00225 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46861 * 89.99972 * 9 7 5 11 11 H 1.48498 * 109.47453 * 210.00313 * 9 7 5 12 12 H 1.48505 * 109.46941 * 330.00240 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.48600 * 110.99853 * 52.56880 * 16 15 13 18 18 C 1.55106 * 103.32258 * 159.28292 * 17 16 15 19 19 C 1.53845 * 102.73905 * 323.19433 * 18 17 16 20 20 C 1.48108 * 110.99658 * 169.99695 * 16 15 13 21 21 O 1.43067 * 110.74321 * 261.05969 * 19 18 17 22 22 C 1.44136 * 104.75461 * 211.33906 * 21 19 18 23 23 C 1.51149 * 106.04064 * 27.43990 * 22 21 19 24 24 C 1.37922 * 132.63593 * 162.86150 * 23 22 21 25 25 C 1.38290 * 119.98364 * 179.97438 * 24 23 22 26 26 C 1.38255 * 119.99522 * 359.94033 * 25 24 23 27 27 C 1.38263 * 120.05593 * 0.08320 * 26 25 24 28 28 C 1.37989 * 120.02267 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 31 31 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 32 32 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 34 34 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 35 35 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 36 36 H 0.96997 * 120.00410 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 38 38 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 39 39 H 1.09001 * 110.64714 * 277.73399 * 17 16 15 40 40 H 1.09000 * 110.65637 * 40.82093 * 17 16 15 41 41 H 1.08995 * 110.75732 * 204.88395 * 18 17 16 42 42 H 1.08996 * 110.91918 * 81.57647 * 18 17 16 43 43 H 1.08996 * 110.00381 * 333.64928 * 20 16 15 44 44 H 1.09000 * 109.99496 * 94.94786 * 20 16 15 45 45 H 1.09004 * 110.13559 * 146.58784 * 22 21 19 46 46 H 1.09002 * 110.13801 * 268.22711 * 22 21 19 47 47 H 1.08000 * 120.01223 * 359.91903 * 24 23 22 48 48 H 1.07994 * 120.00083 * 179.97438 * 25 24 23 49 49 H 1.07997 * 119.97275 * 180.02562 * 26 25 24 50 50 H 1.08011 * 119.98882 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0125 3.4340 -3.9299 10 1 3.1149 4.8545 -3.5091 11 1 3.4059 3.3108 -5.3565 12 1 1.6130 2.9671 -3.7602 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 1.6012 3.5036 3.4460 18 6 1.6039 4.0731 4.8888 19 6 1.4117 2.8136 5.7511 20 6 1.8548 1.6351 4.8772 21 8 0.0439 2.6745 6.1468 22 6 0.0981 2.0291 7.4344 23 6 1.4268 2.4181 8.0410 24 6 1.9135 2.3747 9.3307 25 6 3.1996 2.8063 9.5990 26 6 3.9976 3.2799 8.5742 27 6 3.5103 3.3243 7.2810 28 6 2.2267 2.8951 7.0118 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 5.7170 2.5725 -4.0840 37 1 0.9443 1.0114 2.5302 38 1 2.6227 0.4186 2.5299 39 1 2.1429 4.1656 2.7705 40 1 0.5806 3.3473 3.0964 41 1 0.7769 4.7687 5.0311 42 1 2.5552 4.5547 5.1152 43 1 1.0162 0.9593 4.7096 44 1 2.6736 1.1004 5.3587 45 1 -0.7192 2.3796 8.0647 46 1 0.0415 0.9471 7.3146 47 1 1.2900 2.0046 10.1312 48 1 3.5809 2.7728 10.6089 49 1 5.0021 3.6165 8.7840 50 1 4.1345 3.6949 6.4812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186631803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:57 Heat of formation + Delta-G solvation = -17.574929 kcal Electronic energy + Delta-G solvation = -30665.616630 eV Core-core repulsion = 26658.745133 eV Total energy + Delta-G solvation = -4006.871497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.51492 -39.50513 -38.12056 -36.89121 -35.31698 -32.84621 -32.38214 -31.62013 -30.70420 -30.32625 -28.63022 -28.16598 -26.57108 -25.24800 -23.26406 -22.98597 -22.32417 -21.89076 -21.14199 -20.08780 -18.37730 -17.15253 -16.91539 -16.75972 -16.47704 -16.06470 -15.70728 -15.53565 -15.21508 -14.98365 -14.59812 -14.26029 -13.87925 -13.83956 -13.67228 -13.48289 -13.23595 -13.10958 -12.92678 -12.59156 -12.46017 -12.23504 -12.20934 -12.06205 -11.88498 -11.72625 -11.52240 -11.42936 -11.27948 -11.04968 -10.94809 -10.75999 -10.64432 -10.48511 -10.27257 -10.12794 -9.50570 -9.18769 -8.96101 -8.78227 -8.56960 -8.29527 -7.69355 -6.06459 -4.04944 0.92551 1.05164 3.30069 3.33221 3.35859 3.36676 3.37984 3.49074 3.66843 3.90310 4.18210 4.31090 4.41185 4.57356 4.58456 4.69771 4.78494 4.95617 5.03099 5.07292 5.17407 5.22256 5.26084 5.26909 5.28632 5.31956 5.44194 5.51324 5.53318 5.55308 5.60379 5.64644 5.71069 5.76916 5.84375 5.96318 6.04610 6.08960 6.13701 6.16579 6.18608 6.37509 6.39203 6.51688 6.65309 6.69875 6.91603 6.94265 7.03271 7.38001 7.63316 8.26657 8.49555 8.95927 9.02171 9.53878 11.07023 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.002495 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.017303 B =11221.506481 C =11867.133774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.593 5.593 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.510 3.490 14 O -0.526 6.526 15 C 0.028 3.972 16 N -0.493 5.493 17 C 0.035 3.965 18 C -0.116 4.116 19 C 0.136 3.864 20 C 0.030 3.970 21 O -0.346 6.346 22 C 0.088 3.912 23 C -0.135 4.135 24 C -0.097 4.097 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.083 4.083 28 C -0.103 4.103 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.123 0.877 48 H 0.127 0.873 49 H 0.129 0.871 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.733 -2.949 24.691 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.325 5.325 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.402 6.402 15 C -0.103 4.103 16 N -0.218 5.218 17 C -0.092 4.092 18 C -0.154 4.154 19 C 0.096 3.904 20 C -0.099 4.099 21 O -0.264 6.264 22 C 0.012 3.988 23 C -0.135 4.135 24 C -0.115 4.115 25 C -0.135 4.135 26 C -0.133 4.133 27 C -0.101 4.101 28 C -0.104 4.104 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.104 0.896 45 H 0.114 0.886 46 H 0.095 0.905 47 H 0.141 0.859 48 H 0.145 0.855 49 H 0.147 0.853 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.022 -2.168 24.369 26.438 hybrid contribution -1.161 0.031 -0.508 1.268 sum -11.183 -2.137 23.860 26.438 Atomic orbital electron populations 1.22235 0.96833 1.01579 1.02149 1.21446 0.93314 0.83932 1.03146 1.47921 1.64270 1.13374 1.06950 1.19632 0.97303 0.93325 0.80017 1.21330 0.95313 1.32830 1.07032 0.90740 1.24855 0.94976 0.95829 0.97369 1.69895 1.15146 1.45053 1.23535 0.86859 0.81450 0.81634 0.79770 1.19921 1.21115 1.19136 1.20088 0.78483 0.87002 0.84793 1.90592 1.44987 1.17995 1.86639 1.22324 1.00457 0.96979 0.90541 1.64785 1.53933 1.03215 0.99818 1.23582 0.97230 0.92008 0.96399 1.22662 1.03118 0.95286 0.94285 1.20966 0.80787 0.96800 0.91827 1.23262 0.99772 0.95806 0.91023 1.89074 1.23493 1.80209 1.33637 1.21797 0.94709 0.97691 0.84632 1.21122 0.97235 1.00628 0.94514 1.20343 0.95975 1.00452 0.94759 1.21137 0.93829 0.99088 0.99418 1.21169 1.00042 0.99621 0.92433 1.20527 0.93975 0.98483 0.97166 1.20622 0.95202 0.99857 0.94688 0.91953 0.93159 0.92187 0.89625 0.91473 0.95345 0.94641 0.92597 0.92259 0.88134 0.86152 0.94092 0.89895 0.89353 0.92403 0.89550 0.88589 0.90514 0.85890 0.85536 0.85342 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.64 5.93 -4.05 -0.02 1.61 16 3 N -0.59 -12.10 2.46 -175.06 -0.43 -12.53 16 4 C 0.22 5.31 4.23 -5.19 -0.02 5.29 16 5 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 6 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 9 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.84 16 13 C 0.51 10.35 7.38 -10.98 -0.08 10.27 16 14 O -0.53 -12.61 13.10 5.56 0.07 -12.54 16 15 C 0.03 0.44 4.07 -4.97 -0.02 0.42 16 16 N -0.49 -7.59 5.27 -232.01 -1.22 -8.81 16 17 C 0.03 0.54 5.30 -1.77 -0.01 0.53 16 18 C -0.12 -1.50 6.37 -25.18 -0.16 -1.66 16 19 C 0.14 1.66 1.03 -91.36 -0.09 1.57 16 20 C 0.03 0.38 6.16 -3.02 -0.02 0.36 16 21 O -0.35 -4.24 10.99 -35.23 -0.39 -4.63 16 22 C 0.09 0.81 7.60 36.23 0.28 1.08 16 23 C -0.13 -1.33 6.33 -104.31 -0.66 -1.99 16 24 C -0.10 -0.79 10.04 -39.68 -0.40 -1.19 16 25 C -0.12 -0.90 10.05 -39.56 -0.40 -1.30 16 26 C -0.11 -0.97 10.05 -39.57 -0.40 -1.37 16 27 C -0.08 -0.86 9.52 -39.66 -0.38 -1.24 16 28 C -0.10 -1.15 4.88 -104.67 -0.51 -1.66 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 33 H 0.07 0.88 6.44 -51.93 -0.33 0.54 16 34 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 35 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.06 0.80 6.86 -51.93 -0.36 0.44 16 38 H 0.10 1.42 7.40 -51.93 -0.38 1.04 16 39 H 0.12 2.20 5.99 -51.93 -0.31 1.89 16 40 H 0.04 0.64 8.01 -51.93 -0.42 0.22 16 41 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 42 H 0.09 1.10 7.15 -51.93 -0.37 0.73 16 43 H 0.06 0.69 7.42 -51.93 -0.39 0.30 16 44 H 0.09 1.05 7.71 -51.93 -0.40 0.65 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 48 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 49 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 50 H 0.13 1.31 7.73 -52.48 -0.41 0.90 16 LS Contribution 393.74 15.07 5.93 5.93 Total: -1.00 -34.58 393.74 -10.74 -45.31 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.85 Total: 1.86 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.95 Total: -4.53 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.88 Total: -48.41 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.31 Total: -17.17 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.58 -10.74 -45.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186631803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.739 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds