Wall clock time and date at job start Wed Apr 1 2020 04:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00061 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00225 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46861 * 89.99972 * 9 7 5 11 11 H 1.48498 * 109.47453 * 210.00313 * 9 7 5 12 12 H 1.48505 * 109.46941 * 330.00240 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.48600 * 110.99853 * 52.56880 * 16 15 13 18 18 C 1.55106 * 103.32258 * 159.28292 * 17 16 15 19 19 C 1.53845 * 102.73905 * 323.19433 * 18 17 16 20 20 C 1.48108 * 110.99658 * 169.99695 * 16 15 13 21 21 O 1.43067 * 110.74321 * 261.05969 * 19 18 17 22 22 C 1.44136 * 104.75461 * 211.33906 * 21 19 18 23 23 C 1.51149 * 106.04064 * 27.43990 * 22 21 19 24 24 C 1.37922 * 132.63593 * 162.86150 * 23 22 21 25 25 C 1.38290 * 119.98364 * 179.97438 * 24 23 22 26 26 C 1.38255 * 119.99522 * 359.94033 * 25 24 23 27 27 C 1.38263 * 120.05593 * 0.08320 * 26 25 24 28 28 C 1.37989 * 120.02267 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 31 31 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 32 32 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 34 34 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 35 35 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 36 36 H 0.96997 * 120.00410 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 38 38 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 39 39 H 1.09001 * 110.64714 * 277.73399 * 17 16 15 40 40 H 1.09000 * 110.65637 * 40.82093 * 17 16 15 41 41 H 1.08995 * 110.75732 * 204.88395 * 18 17 16 42 42 H 1.08996 * 110.91918 * 81.57647 * 18 17 16 43 43 H 1.08996 * 110.00381 * 333.64928 * 20 16 15 44 44 H 1.09000 * 109.99496 * 94.94786 * 20 16 15 45 45 H 1.09004 * 110.13559 * 146.58784 * 22 21 19 46 46 H 1.09002 * 110.13801 * 268.22711 * 22 21 19 47 47 H 1.08000 * 120.01223 * 359.91903 * 24 23 22 48 48 H 1.07994 * 120.00083 * 179.97438 * 25 24 23 49 49 H 1.07997 * 119.97275 * 180.02562 * 26 25 24 50 50 H 1.08011 * 119.98882 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0125 3.4340 -3.9299 10 1 3.1149 4.8545 -3.5091 11 1 3.4059 3.3108 -5.3565 12 1 1.6130 2.9671 -3.7602 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 1.6012 3.5036 3.4460 18 6 1.6039 4.0731 4.8888 19 6 1.4117 2.8136 5.7511 20 6 1.8548 1.6351 4.8772 21 8 0.0439 2.6745 6.1468 22 6 0.0981 2.0291 7.4344 23 6 1.4268 2.4181 8.0410 24 6 1.9135 2.3747 9.3307 25 6 3.1996 2.8063 9.5990 26 6 3.9976 3.2799 8.5742 27 6 3.5103 3.3243 7.2810 28 6 2.2267 2.8951 7.0118 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 5.7170 2.5725 -4.0840 37 1 0.9443 1.0114 2.5302 38 1 2.6227 0.4186 2.5299 39 1 2.1429 4.1656 2.7705 40 1 0.5806 3.3473 3.0964 41 1 0.7769 4.7687 5.0311 42 1 2.5552 4.5547 5.1152 43 1 1.0162 0.9593 4.7096 44 1 2.6736 1.1004 5.3587 45 1 -0.7192 2.3796 8.0647 46 1 0.0415 0.9471 7.3146 47 1 1.2900 2.0046 10.1312 48 1 3.5809 2.7728 10.6089 49 1 5.0021 3.6165 8.7840 50 1 4.1345 3.6949 6.4812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186631803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:56 Heat of formation + Delta-G solvation = -41.059434 kcal Electronic energy + Delta-G solvation = -30666.634994 eV Core-core repulsion = 26658.745133 eV Total energy + Delta-G solvation = -4007.889861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.35293 -40.95209 -39.06165 -37.89952 -36.89226 -34.88660 -33.49750 -32.32290 -31.93839 -31.51399 -29.96697 -29.44647 -27.79675 -26.23034 -24.47640 -24.15295 -23.81203 -22.65038 -22.36864 -20.96471 -19.89899 -19.09895 -18.10201 -17.83159 -17.70463 -17.01726 -16.86319 -16.60998 -16.34042 -16.18335 -16.02828 -15.48576 -15.04781 -14.89549 -14.73849 -14.59231 -14.57215 -14.29924 -14.08809 -13.94610 -13.68125 -13.43035 -13.30987 -13.23591 -13.13352 -12.95831 -12.71339 -12.61900 -12.51243 -12.40212 -12.23366 -12.08823 -11.99199 -11.86438 -11.73569 -11.56779 -11.09374 -10.83383 -10.49339 -9.84023 -9.56504 -9.52361 -9.34284 -8.33963 -6.38698 0.25316 0.38965 1.31415 1.35722 1.43887 1.77241 2.16652 2.30359 2.68911 2.70717 2.98836 3.00617 3.18980 3.48152 3.58917 3.60029 3.75369 4.00965 4.07723 4.13682 4.19029 4.21217 4.32612 4.37975 4.39178 4.42121 4.46971 4.51757 4.59515 4.61002 4.69169 4.70582 4.77420 4.79638 4.88638 4.89648 4.96636 4.98409 4.99827 5.09080 5.12630 5.35531 5.42226 5.45041 5.46490 5.54396 5.65442 5.67361 5.78362 5.89517 6.00673 6.24956 6.62676 6.70757 7.21876 7.43874 8.83168 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.002495 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.017303 B =11221.506481 C =11867.133774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.601 5.601 4 C 0.228 3.772 5 C -0.533 4.533 6 H 0.028 0.972 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.499 3.501 14 O -0.573 6.573 15 C 0.041 3.959 16 N -0.513 5.513 17 C 0.041 3.959 18 C -0.111 4.111 19 C 0.141 3.859 20 C 0.036 3.964 21 O -0.363 6.363 22 C 0.084 3.916 23 C -0.142 4.142 24 C -0.098 4.098 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.101 4.101 28 C -0.127 4.127 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.017 0.983 36 H 0.268 0.732 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.115 0.885 46 H 0.092 0.908 47 H 0.151 0.849 48 H 0.156 0.844 49 H 0.146 0.854 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.226 -4.178 26.981 30.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.332 5.332 4 C 0.105 3.895 5 C -0.572 4.572 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.287 3.713 14 O -0.453 6.453 15 C -0.090 4.090 16 N -0.238 5.238 17 C -0.087 4.087 18 C -0.149 4.149 19 C 0.101 3.899 20 C -0.092 4.092 21 O -0.282 6.282 22 C 0.008 3.992 23 C -0.142 4.142 24 C -0.115 4.115 25 C -0.131 4.131 26 C -0.138 4.138 27 C -0.119 4.119 28 C -0.127 4.127 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.133 0.867 46 H 0.110 0.890 47 H 0.168 0.832 48 H 0.173 0.827 49 H 0.164 0.836 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.545 -3.452 26.685 29.688 hybrid contribution -0.284 0.365 -1.104 1.197 sum -12.829 -3.086 25.581 28.784 Atomic orbital electron populations 1.22150 0.94047 1.03656 1.01890 1.21779 0.95525 0.81185 1.03996 1.48044 1.64289 1.15193 1.05714 1.19266 0.94753 0.92945 0.82486 1.21551 0.97037 1.31996 1.06588 0.95406 1.25848 0.96708 0.97214 0.98980 1.70049 1.17432 1.46636 1.24470 0.85719 0.80434 0.78993 0.77811 1.20255 1.19950 1.16205 1.21015 0.77304 0.86712 0.86251 1.90585 1.46986 1.20239 1.87502 1.22260 1.02437 0.96542 0.87726 1.64725 1.54778 1.03361 1.00955 1.23339 0.96196 0.91945 0.97192 1.22589 1.03195 0.96107 0.93010 1.20805 0.81332 0.95558 0.92186 1.23255 1.00284 0.96150 0.89525 1.89038 1.23269 1.80703 1.35220 1.22031 0.95143 0.98428 0.83600 1.21312 0.97245 1.00731 0.94942 1.20716 0.96449 0.99614 0.94753 1.21532 0.93518 0.97586 1.00480 1.21444 1.01096 0.99379 0.91890 1.20621 0.93978 0.99351 0.97980 1.20601 0.95777 1.01709 0.94646 0.88637 0.92457 0.93409 0.90765 0.88750 0.93463 0.96485 0.92293 0.89389 0.86454 0.89740 0.94486 0.89516 0.89593 0.91150 0.89141 0.86668 0.89027 0.83151 0.82656 0.83598 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 10.24 71.98 0.74 -2.84 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.60 -24.64 2.46 -826.16 -2.03 -26.67 16 4 C 0.23 11.28 4.23 85.64 0.36 11.64 16 5 C -0.53 -31.91 9.94 25.60 0.25 -31.65 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.62 5.47 84.65 0.46 1.08 16 8 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 9 Si 0.95 45.22 27.47 68.60 1.88 47.11 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 13 C 0.50 20.61 7.38 87.66 0.65 21.26 16 14 O -0.57 -28.93 13.10 -3.03 -0.04 -28.97 16 15 C 0.04 1.23 4.07 85.56 0.35 1.58 16 16 N -0.51 -15.82 5.27 -887.95 -4.68 -20.50 16 17 C 0.04 1.31 5.30 86.70 0.46 1.77 16 18 C -0.11 -2.96 6.37 31.60 0.20 -2.75 16 19 C 0.14 3.35 1.03 -11.28 -0.01 3.34 16 20 C 0.04 0.86 6.16 86.16 0.53 1.39 16 21 O -0.36 -8.36 10.99 -148.98 -1.64 -10.00 16 22 C 0.08 1.33 7.60 71.38 0.54 1.87 16 23 C -0.14 -2.49 6.33 -19.66 -0.12 -2.61 16 24 C -0.10 -1.28 10.04 22.21 0.22 -1.06 16 25 C -0.11 -1.40 10.05 22.29 0.22 -1.18 16 26 C -0.12 -1.85 10.05 22.28 0.22 -1.62 16 27 C -0.10 -2.05 9.52 22.22 0.21 -1.84 16 28 C -0.13 -2.72 4.88 -19.90 -0.10 -2.82 16 29 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.06 1.21 7.22 -2.39 -0.02 1.20 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 2.35 8.07 -2.38 -0.02 2.33 16 33 H 0.09 2.25 6.44 -2.39 -0.02 2.23 16 34 H 0.05 2.16 7.13 -2.39 -0.02 2.14 16 35 H 0.02 0.91 6.85 -2.39 -0.02 0.89 16 36 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 37 H 0.09 2.14 6.86 -2.39 -0.02 2.12 16 38 H 0.12 3.11 7.40 -2.39 -0.02 3.10 16 39 H 0.08 3.34 5.99 -2.39 -0.01 3.33 16 40 H 0.04 1.18 8.01 -2.39 -0.02 1.17 16 41 H 0.09 2.18 8.07 -2.39 -0.02 2.16 16 42 H 0.09 2.27 7.15 -2.39 -0.02 2.25 16 43 H 0.07 1.51 7.42 -2.39 -0.02 1.49 16 44 H 0.09 2.10 7.71 -2.39 -0.02 2.08 16 45 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 48 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 49 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 50 H 0.12 2.55 7.73 -2.90 -0.02 2.53 16 Total: -1.00 -80.01 393.74 0.38 -79.63 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.87 Total: 20.86 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.71 Total: -1.06 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -6.41 Total: -107.58 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -1.68 Total: -38.96 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Total: -80.01 0.38 -79.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186631803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.575 kcal (2) G-P(sol) polarization free energy of solvation -80.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds