Wall clock time and date at job start Wed Apr 1 2020 03:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.47123 * 2 1 4 4 C 1.47906 * 110.99844 * 72.69236 * 3 2 1 5 5 C 1.53992 * 107.05549 * 214.15142 * 4 3 2 6 6 C 1.54597 * 105.14089 * 1.22441 * 5 4 3 7 7 C 1.48531 * 111.00185 * 315.29418 * 3 2 1 8 8 H 1.08993 * 110.80776 * 41.21954 * 7 3 2 9 9 C 1.52994 * 110.66675 * 278.15418 * 7 3 2 10 10 N 1.46509 * 109.47100 * 66.95639 * 9 7 3 11 11 C 1.34769 * 119.99953 * 185.86979 * 10 9 7 12 12 O 1.21727 * 120.00431 * 0.02562 * 11 10 9 13 13 C 1.46258 * 119.99903 * 179.97438 * 11 10 9 14 14 C 1.35023 * 120.00043 * 173.02847 * 13 11 10 15 15 C 1.46967 * 119.99967 * 345.55387 * 14 13 11 16 16 C 1.40028 * 120.09987 * 317.96201 * 15 14 13 17 17 C 1.37596 * 119.89661 * 179.74216 * 16 15 14 18 18 C 1.39179 * 120.09919 * 0.50943 * 17 16 15 19 19 O 1.35566 * 119.89699 * 179.74248 * 18 17 16 20 20 C 1.34785 * 117.00238 * 185.47970 * 19 18 17 21 21 H 1.08001 * 119.99417 * 5.12021 * 20 19 18 22 22 C 1.38718 * 120.00197 * 185.12506 * 20 19 18 23 23 N 1.31504 * 119.99937 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99894 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47439 * 89.99651 * 24 22 20 26 26 H 1.48500 * 109.47091 * 210.00018 * 24 22 20 27 27 H 1.48504 * 109.47036 * 329.99583 * 24 22 20 28 28 C 1.39179 * 120.20514 * 359.76931 * 18 17 16 29 29 C 1.37599 * 120.09948 * 359.96993 * 28 18 17 30 30 H 1.08993 * 109.47270 * 187.03899 * 1 2 3 31 31 H 1.09002 * 109.46866 * 307.04339 * 1 2 3 32 32 H 1.08998 * 109.46940 * 67.03759 * 1 2 3 33 33 H 1.09004 * 109.47005 * 239.99793 * 2 1 3 34 34 H 1.09002 * 109.46668 * 120.00584 * 2 1 3 35 35 H 1.09002 * 109.91674 * 94.80091 * 4 3 2 36 36 H 1.08995 * 109.91619 * 333.50649 * 4 3 2 37 37 H 1.08997 * 110.30821 * 120.14254 * 5 4 3 38 38 H 1.09001 * 110.31248 * 242.20758 * 5 4 3 39 39 H 1.09007 * 110.72343 * 140.30970 * 6 5 4 40 40 H 1.08993 * 110.72665 * 263.41817 * 6 5 4 41 41 H 1.08999 * 109.47255 * 186.95692 * 9 7 3 42 42 H 1.08998 * 109.47255 * 306.95888 * 9 7 3 43 43 H 0.96996 * 119.99697 * 5.86472 * 10 9 7 44 44 H 1.07998 * 120.00014 * 353.02374 * 13 11 10 45 45 H 1.08001 * 120.00294 * 165.55850 * 14 13 11 46 46 H 1.08003 * 120.04982 * 359.97438 * 16 15 14 47 47 H 1.07993 * 119.95050 * 180.27734 * 17 16 15 48 48 H 0.97003 * 119.99890 * 180.02562 * 23 22 20 49 49 H 1.07994 * 119.94849 * 180.02562 * 28 18 17 50 50 H 1.08000 * 120.05148 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8091 2.0216 1.3183 5 6 1.5024 3.5081 1.0582 6 6 1.5220 3.6612 -0.4800 7 6 1.2680 2.2153 -0.9755 8 1 0.2042 1.9798 -0.9458 9 6 1.8226 2.0235 -2.3884 10 7 1.5527 0.6552 -2.8373 11 6 2.0549 0.2192 -4.0095 12 8 2.7331 0.9620 -4.6950 13 6 1.7859 -1.1468 -4.4574 14 6 2.1675 -1.5402 -5.6914 15 6 2.5578 -0.5389 -6.6939 16 6 1.8192 0.6428 -6.8306 17 6 2.1914 1.5798 -7.7670 18 6 3.2938 1.3497 -8.5847 19 8 3.6538 2.2733 -9.5094 20 6 4.6582 1.9431 -10.3454 21 1 5.0814 0.9499 -10.3152 22 6 5.1483 2.8788 -11.2445 23 7 4.6327 4.0880 -11.2816 24 14 6.5408 2.4213 -12.4026 25 1 5.9772 1.8730 -13.6623 26 1 7.3491 3.6294 -12.7065 27 1 7.4033 1.3977 -11.7595 28 6 4.0275 0.1739 -8.4564 29 6 3.6659 -0.7663 -7.5191 30 1 -0.3633 -1.0198 0.1259 31 1 -0.3633 0.6191 0.8203 32 1 -0.3633 0.4009 -0.9462 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.7107 1.9288 1.9237 36 1 0.9671 1.5522 1.8270 37 1 0.5192 3.7660 1.4516 38 1 2.2678 4.1374 1.5123 39 1 0.7258 4.3279 -0.8115 40 1 2.4924 4.0233 -0.8193 41 1 1.3427 2.7295 -3.0661 42 1 2.8984 2.1986 -2.3833 43 1 1.0126 0.0632 -2.2908 44 1 1.2822 -1.8410 -3.8010 45 1 2.1859 -2.5906 -5.9418 46 1 0.9609 0.8202 -6.1995 47 1 1.6250 2.4935 -7.8701 48 1 4.9752 4.7422 -11.9105 49 1 4.8825 -0.0002 -9.0928 50 1 4.2355 -1.6786 -7.4205 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255036515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:30 Heat of formation + Delta-G solvation = 2.775936 kcal Electronic energy + Delta-G solvation = -29726.284824 eV Core-core repulsion = 25720.295807 eV Total energy + Delta-G solvation = -4005.989017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.32503 -39.33258 -38.55989 -36.47698 -34.50370 -33.78527 -32.98720 -32.10655 -30.35399 -30.08897 -29.03899 -27.97798 -25.71911 -25.21267 -23.79127 -22.58398 -21.74038 -21.44754 -20.72903 -20.22706 -18.93241 -17.90391 -17.20171 -17.02616 -16.58564 -15.85338 -15.45715 -15.16462 -14.64277 -14.56556 -14.48266 -14.30032 -14.21512 -13.90665 -13.61873 -13.50580 -13.17961 -12.96902 -12.86967 -12.65353 -12.41665 -12.26669 -12.14192 -11.91811 -11.79873 -11.66790 -11.58176 -11.44392 -11.30981 -11.17427 -10.98021 -10.78345 -10.66596 -10.56709 -10.37910 -9.46705 -9.35772 -9.11970 -8.84818 -8.70878 -8.65835 -7.91354 -6.83203 -6.43741 -3.99137 1.28301 2.45947 2.74228 3.15543 3.16786 3.20935 3.38434 3.57838 3.72854 3.99164 4.29547 4.30748 4.55364 4.61554 4.72994 4.74858 4.86914 4.89481 4.98318 5.10944 5.15119 5.17960 5.25833 5.31874 5.36257 5.37759 5.43517 5.50786 5.53586 5.61998 5.65126 5.73155 5.77292 5.78294 5.86562 5.88378 5.99802 6.28812 6.37143 6.47822 6.55022 6.61189 6.64206 6.70287 6.82208 7.06850 7.15189 7.39140 7.48570 7.53125 7.73443 7.95463 8.03009 8.63504 9.02008 9.74399 10.74222 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017136 B = 0.002156 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.589137 B =12985.755297 C =14049.399334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.031 3.969 3 N -0.507 5.507 4 C 0.032 3.968 5 C -0.130 4.130 6 C -0.117 4.117 7 C 0.043 3.957 8 H 0.069 0.931 9 C 0.136 3.864 10 N -0.738 5.738 11 C 0.538 3.462 12 O -0.512 6.512 13 C -0.270 4.270 14 C 0.028 3.972 15 C -0.186 4.186 16 C 0.007 3.993 17 C -0.201 4.201 18 C 0.171 3.829 19 O -0.172 6.172 20 C -0.389 4.389 21 H 0.094 0.906 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.249 4.249 29 C -0.042 4.042 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.392 0.608 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.101 0.899 47 H 0.114 0.886 48 H 0.270 0.730 49 H 0.126 0.874 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 -8.073 24.158 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.097 4.097 3 N -0.231 5.231 4 C -0.095 4.095 5 C -0.168 4.168 6 C -0.155 4.155 7 C -0.065 4.065 8 H 0.087 0.913 9 C 0.012 3.988 10 N -0.394 5.394 11 C 0.328 3.672 12 O -0.388 6.388 13 C -0.291 4.291 14 C 0.008 3.992 15 C -0.187 4.187 16 C -0.011 4.011 17 C -0.221 4.221 18 C 0.116 3.884 19 O -0.075 6.075 20 C -0.465 4.465 21 H 0.111 0.889 22 C -0.166 4.166 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 C -0.268 4.268 29 C -0.060 4.060 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.228 0.772 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.119 0.881 47 H 0.132 0.868 48 H 0.080 0.920 49 H 0.144 0.856 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.377 -7.080 23.331 25.781 hybrid contribution -0.418 -0.622 0.194 0.774 sum -8.795 -7.701 23.526 26.270 Atomic orbital electron populations 1.22539 0.98062 1.02798 1.02278 1.22455 0.92931 0.90931 1.03409 1.64944 1.52328 1.01476 1.04379 1.22884 1.00725 0.94100 0.91834 1.22379 1.01873 0.96145 0.96451 1.22451 1.03167 0.95042 0.94871 1.23202 0.97014 0.93751 0.92557 0.91284 1.21217 1.01925 0.83624 0.92037 1.46225 1.55383 1.14695 1.23050 1.18463 0.80143 0.88004 0.80617 1.90995 1.37624 1.56671 1.53518 1.22591 1.11573 0.96321 0.98644 1.22319 0.87598 0.97929 0.91345 1.18293 1.01622 0.97267 1.01471 1.20456 0.96740 0.90946 0.93006 1.19998 0.99596 1.01367 1.01103 1.19538 0.92079 0.88678 0.88128 1.83920 1.48082 1.37423 1.38047 1.21389 1.12604 0.99253 1.13299 0.88913 1.25327 0.98621 0.94684 0.97968 1.70024 1.40348 1.03743 1.35296 0.85698 0.79675 0.78301 0.79685 1.19847 1.20241 1.19136 1.20964 1.04501 0.96629 1.04692 1.20760 0.94786 0.97377 0.93101 0.91566 0.92235 0.91910 0.89715 0.90590 0.90317 0.93550 0.91580 0.90792 0.90654 0.90064 0.91359 0.90406 0.77168 0.86404 0.86150 0.88115 0.86840 0.91964 0.85636 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.14 8.36 37.16 0.31 -0.83 16 2 C 0.03 0.23 5.44 -3.82 -0.02 0.20 16 3 N -0.51 -4.34 5.23 -222.63 -1.16 -5.51 16 4 C 0.03 0.23 6.41 -2.75 -0.02 0.21 16 5 C -0.13 -0.83 6.93 -25.37 -0.18 -1.01 16 6 C -0.12 -0.89 6.50 -24.87 -0.16 -1.06 16 7 C 0.04 0.37 2.27 -65.79 -0.15 0.22 16 8 H 0.07 0.54 5.38 -51.93 -0.28 0.26 16 9 C 0.14 1.57 5.39 -4.04 -0.02 1.55 16 10 N -0.74 -8.62 4.71 -61.75 -0.29 -8.91 16 11 C 0.54 8.24 6.71 -13.04 -0.09 8.15 16 12 O -0.51 -10.31 12.45 5.17 0.06 -10.25 16 13 C -0.27 -3.53 9.85 -37.50 -0.37 -3.90 16 14 C 0.03 0.40 9.80 -37.19 -0.36 0.04 16 15 C -0.19 -3.51 4.51 -105.02 -0.47 -3.98 16 16 C 0.01 0.14 6.72 -39.15 -0.26 -0.12 16 17 C -0.20 -4.69 9.97 -39.47 -0.39 -5.09 16 18 C 0.17 4.40 6.66 -38.88 -0.26 4.14 16 19 O -0.17 -5.12 9.74 0.74 0.01 -5.12 16 20 C -0.39 -11.19 9.44 30.91 0.29 -10.90 16 21 H 0.09 2.47 5.26 -52.49 -0.28 2.19 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 24 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 27 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 28 C -0.25 -5.77 9.11 -39.47 -0.36 -6.13 16 29 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 6.59 -51.93 -0.34 0.00 16 32 H 0.06 0.39 5.29 -51.93 -0.27 0.11 16 33 H 0.08 0.68 6.07 -51.93 -0.32 0.37 16 34 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.28 6.33 -51.93 -0.33 -0.04 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 43 H 0.39 3.55 4.53 -40.82 -0.18 3.36 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 46 H 0.10 1.87 7.05 -52.48 -0.37 1.50 16 47 H 0.11 2.57 8.06 -52.49 -0.42 2.15 16 48 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.13 2.88 5.68 -52.49 -0.30 2.59 16 50 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -34.04 391.83 -10.03 -44.07 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.29 Total: 7.57 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -2.99 Total: -18.71 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.70 Total: -39.35 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.07 Total: -15.37 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.04 -10.03 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255036515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.842 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds