Wall clock time and date at job start Wed Apr 1 2020 03:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.47123 * 2 1 4 4 C 1.47906 * 110.99844 * 72.69236 * 3 2 1 5 5 C 1.53992 * 107.05549 * 214.15142 * 4 3 2 6 6 C 1.54597 * 105.14089 * 1.22441 * 5 4 3 7 7 C 1.48531 * 111.00185 * 315.29418 * 3 2 1 8 8 H 1.08993 * 110.80776 * 41.21954 * 7 3 2 9 9 C 1.52994 * 110.66675 * 278.15418 * 7 3 2 10 10 N 1.46509 * 109.47100 * 66.95639 * 9 7 3 11 11 C 1.34769 * 119.99953 * 185.86979 * 10 9 7 12 12 O 1.21727 * 120.00431 * 0.02562 * 11 10 9 13 13 C 1.46258 * 119.99903 * 179.97438 * 11 10 9 14 14 C 1.35023 * 120.00043 * 173.02847 * 13 11 10 15 15 C 1.46967 * 119.99967 * 345.55387 * 14 13 11 16 16 C 1.40028 * 120.09987 * 317.96201 * 15 14 13 17 17 C 1.37596 * 119.89661 * 179.74216 * 16 15 14 18 18 C 1.39179 * 120.09919 * 0.50943 * 17 16 15 19 19 O 1.35566 * 119.89699 * 179.74248 * 18 17 16 20 20 C 1.34785 * 117.00238 * 185.47970 * 19 18 17 21 21 H 1.08001 * 119.99417 * 5.12021 * 20 19 18 22 22 C 1.38718 * 120.00197 * 185.12506 * 20 19 18 23 23 N 1.31504 * 119.99937 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99894 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47439 * 89.99651 * 24 22 20 26 26 H 1.48500 * 109.47091 * 210.00018 * 24 22 20 27 27 H 1.48504 * 109.47036 * 329.99583 * 24 22 20 28 28 C 1.39179 * 120.20514 * 359.76931 * 18 17 16 29 29 C 1.37599 * 120.09948 * 359.96993 * 28 18 17 30 30 H 1.08993 * 109.47270 * 187.03899 * 1 2 3 31 31 H 1.09002 * 109.46866 * 307.04339 * 1 2 3 32 32 H 1.08998 * 109.46940 * 67.03759 * 1 2 3 33 33 H 1.09004 * 109.47005 * 239.99793 * 2 1 3 34 34 H 1.09002 * 109.46668 * 120.00584 * 2 1 3 35 35 H 1.09002 * 109.91674 * 94.80091 * 4 3 2 36 36 H 1.08995 * 109.91619 * 333.50649 * 4 3 2 37 37 H 1.08997 * 110.30821 * 120.14254 * 5 4 3 38 38 H 1.09001 * 110.31248 * 242.20758 * 5 4 3 39 39 H 1.09007 * 110.72343 * 140.30970 * 6 5 4 40 40 H 1.08993 * 110.72665 * 263.41817 * 6 5 4 41 41 H 1.08999 * 109.47255 * 186.95692 * 9 7 3 42 42 H 1.08998 * 109.47255 * 306.95888 * 9 7 3 43 43 H 0.96996 * 119.99697 * 5.86472 * 10 9 7 44 44 H 1.07998 * 120.00014 * 353.02374 * 13 11 10 45 45 H 1.08001 * 120.00294 * 165.55850 * 14 13 11 46 46 H 1.08003 * 120.04982 * 359.97438 * 16 15 14 47 47 H 1.07993 * 119.95050 * 180.27734 * 17 16 15 48 48 H 0.97003 * 119.99890 * 180.02562 * 23 22 20 49 49 H 1.07994 * 119.94849 * 180.02562 * 28 18 17 50 50 H 1.08000 * 120.05148 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8091 2.0216 1.3183 5 6 1.5024 3.5081 1.0582 6 6 1.5220 3.6612 -0.4800 7 6 1.2680 2.2153 -0.9755 8 1 0.2042 1.9798 -0.9458 9 6 1.8226 2.0235 -2.3884 10 7 1.5527 0.6552 -2.8373 11 6 2.0549 0.2192 -4.0095 12 8 2.7331 0.9620 -4.6950 13 6 1.7859 -1.1468 -4.4574 14 6 2.1675 -1.5402 -5.6914 15 6 2.5578 -0.5389 -6.6939 16 6 1.8192 0.6428 -6.8306 17 6 2.1914 1.5798 -7.7670 18 6 3.2938 1.3497 -8.5847 19 8 3.6538 2.2733 -9.5094 20 6 4.6582 1.9431 -10.3454 21 1 5.0814 0.9499 -10.3152 22 6 5.1483 2.8788 -11.2445 23 7 4.6327 4.0880 -11.2816 24 14 6.5408 2.4213 -12.4026 25 1 5.9772 1.8730 -13.6623 26 1 7.3491 3.6294 -12.7065 27 1 7.4033 1.3977 -11.7595 28 6 4.0275 0.1739 -8.4564 29 6 3.6659 -0.7663 -7.5191 30 1 -0.3633 -1.0198 0.1259 31 1 -0.3633 0.6191 0.8203 32 1 -0.3633 0.4009 -0.9462 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.7107 1.9288 1.9237 36 1 0.9671 1.5522 1.8270 37 1 0.5192 3.7660 1.4516 38 1 2.2678 4.1374 1.5123 39 1 0.7258 4.3279 -0.8115 40 1 2.4924 4.0233 -0.8193 41 1 1.3427 2.7295 -3.0661 42 1 2.8984 2.1986 -2.3833 43 1 1.0126 0.0632 -2.2908 44 1 1.2822 -1.8410 -3.8010 45 1 2.1859 -2.5906 -5.9418 46 1 0.9609 0.8202 -6.1995 47 1 1.6250 2.4935 -7.8701 48 1 4.9752 4.7422 -11.9105 49 1 4.8825 -0.0002 -9.0928 50 1 4.2355 -1.6786 -7.4205 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255036515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:29 Heat of formation + Delta-G solvation = -20.693461 kcal Electronic energy + Delta-G solvation = -29727.302534 eV Core-core repulsion = 25720.295807 eV Total energy + Delta-G solvation = -4007.006726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.28366 -40.72001 -40.00928 -38.17598 -35.62587 -34.60565 -34.34217 -33.90828 -31.82613 -31.25899 -29.60591 -29.46185 -27.46442 -26.39460 -24.55202 -23.84370 -23.41986 -22.43651 -21.85332 -21.05676 -20.14271 -19.70106 -18.83643 -18.04631 -17.75794 -16.82446 -16.48213 -16.36656 -16.13652 -16.13305 -15.55180 -15.50966 -15.41168 -15.10384 -14.87116 -14.62558 -14.50658 -14.45055 -14.18561 -13.72876 -13.55019 -13.48641 -13.41939 -13.02242 -12.89966 -12.67227 -12.53881 -12.34604 -12.33384 -12.25194 -12.21090 -12.11830 -12.05857 -11.76101 -11.35665 -11.26968 -10.93254 -10.66773 -10.38089 -9.98371 -9.59352 -9.30695 -8.55505 -8.48951 -6.15592 -0.01880 0.71222 1.13163 1.33661 1.45878 1.52278 2.17282 2.35707 2.50344 2.87197 2.95884 3.22663 3.50047 3.65656 3.69880 3.93371 4.01884 4.07283 4.11482 4.15775 4.17371 4.21107 4.26589 4.28171 4.48694 4.54951 4.57261 4.59082 4.61107 4.72090 4.77295 4.85049 4.89943 4.99586 5.03142 5.03700 5.05345 5.09516 5.16045 5.24357 5.26073 5.30696 5.33846 5.46179 5.55696 5.67506 5.72419 5.85018 5.94458 6.02067 6.12340 6.24841 6.69077 6.95317 7.46064 7.77445 8.74773 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017136 B = 0.002156 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.589137 B =12985.755297 C =14049.399334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.029 3.971 3 N -0.529 5.529 4 C 0.033 3.967 5 C -0.126 4.126 6 C -0.121 4.121 7 C 0.053 3.947 8 H 0.085 0.915 9 C 0.137 3.863 10 N -0.716 5.716 11 C 0.524 3.476 12 O -0.569 6.569 13 C -0.235 4.235 14 C 0.008 3.992 15 C -0.158 4.158 16 C 0.008 3.992 17 C -0.219 4.219 18 C 0.126 3.874 19 O -0.230 6.230 20 C -0.415 4.415 21 H 0.103 0.897 22 C -0.025 4.025 23 N -0.921 5.921 24 Si 1.022 2.978 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.253 1.253 28 C -0.257 4.257 29 C -0.048 4.048 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.409 0.591 44 H 0.172 0.828 45 H 0.170 0.830 46 H 0.120 0.880 47 H 0.102 0.898 48 H 0.273 0.727 49 H 0.120 0.880 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.523 -12.006 27.389 31.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.099 4.099 3 N -0.253 5.253 4 C -0.094 4.094 5 C -0.164 4.164 6 C -0.159 4.159 7 C -0.056 4.056 8 H 0.102 0.898 9 C 0.013 3.987 10 N -0.371 5.371 11 C 0.315 3.685 12 O -0.450 6.450 13 C -0.256 4.256 14 C -0.012 4.012 15 C -0.159 4.159 16 C -0.010 4.010 17 C -0.239 4.239 18 C 0.075 3.925 19 O -0.137 6.137 20 C -0.491 4.491 21 H 0.120 0.880 22 C -0.222 4.222 23 N -0.559 5.559 24 Si 0.841 3.159 25 H -0.185 1.185 26 H -0.195 1.195 27 H -0.176 1.176 28 C -0.276 4.276 29 C -0.066 4.066 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.249 0.751 44 H 0.189 0.811 45 H 0.187 0.813 46 H 0.137 0.863 47 H 0.120 0.880 48 H 0.082 0.918 49 H 0.138 0.862 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.554 -11.078 26.661 30.411 hybrid contribution -0.288 0.400 -0.294 0.574 sum -9.842 -10.678 26.367 30.102 Atomic orbital electron populations 1.22479 0.96657 1.03805 1.02150 1.22479 0.94069 0.90011 1.03324 1.64877 1.53018 1.02312 1.05104 1.22905 1.01222 0.94286 0.91027 1.22375 1.02856 0.96002 0.95157 1.22480 1.02630 0.94728 0.96105 1.23082 0.97440 0.94423 0.90638 0.89790 1.21179 1.00192 0.83330 0.94048 1.46101 1.54090 1.14906 1.22048 1.19128 0.79569 0.88857 0.80991 1.91003 1.40296 1.58433 1.55268 1.23052 1.08407 0.95234 0.98895 1.22583 0.88905 0.98944 0.90731 1.18882 0.99370 0.96922 1.00685 1.20693 0.97457 0.90959 0.91927 1.20185 0.99460 1.02184 1.02024 1.20020 0.93716 0.89645 0.89081 1.83885 1.49933 1.39534 1.40315 1.21882 1.12940 1.00127 1.14129 0.88009 1.26689 1.01509 0.94367 0.99656 1.70178 1.43034 1.05370 1.37309 0.84544 0.75784 0.78422 0.77152 1.18450 1.19507 1.17642 1.21105 1.04185 0.96610 1.05725 1.21205 0.95315 0.98007 0.92097 0.90103 0.91946 0.92297 0.90636 0.89867 0.90519 0.92185 0.90065 0.90574 0.89715 0.91758 0.92488 0.93328 0.75140 0.81062 0.81250 0.86257 0.87989 0.91751 0.86215 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 8.36 71.98 0.60 -0.86 16 2 C 0.03 0.33 5.44 86.31 0.47 0.80 16 3 N -0.53 -7.98 5.23 -858.28 -4.49 -12.47 16 4 C 0.03 0.38 6.41 86.44 0.55 0.94 16 5 C -0.13 -1.36 6.93 31.47 0.22 -1.15 16 6 C -0.12 -1.74 6.50 31.80 0.21 -1.54 16 7 C 0.05 0.81 2.27 45.26 0.10 0.92 16 8 H 0.08 1.08 5.38 -2.39 -0.01 1.07 16 9 C 0.14 3.11 5.39 86.38 0.47 3.58 16 10 N -0.72 -14.99 4.71 -467.49 -2.20 -17.19 16 11 C 0.52 14.67 6.71 86.33 0.58 15.25 16 12 O -0.57 -22.69 12.45 -4.43 -0.06 -22.75 16 13 C -0.24 -4.84 9.85 23.62 0.23 -4.61 16 14 C 0.01 0.18 9.80 23.82 0.23 0.41 16 15 C -0.16 -5.60 4.51 -20.12 -0.09 -5.69 16 16 C 0.01 0.32 6.72 22.55 0.15 0.47 16 17 C -0.22 -10.86 9.97 22.34 0.22 -10.63 16 18 C 0.13 6.98 6.66 22.72 0.15 7.13 16 19 O -0.23 -14.93 9.74 -20.27 -0.20 -15.13 16 20 C -0.41 -25.52 9.44 67.93 0.64 -24.87 16 21 H 0.10 5.75 5.26 -2.91 -0.02 5.73 16 22 C -0.02 -1.48 5.49 84.86 0.47 -1.01 16 23 N -0.92 -58.89 13.67 21.62 0.30 -58.60 16 24 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 28 C -0.26 -12.33 9.11 22.34 0.20 -12.13 16 29 C -0.05 -1.84 9.78 22.55 0.22 -1.62 16 30 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.47 6.59 -2.39 -0.02 0.45 16 32 H 0.06 0.49 5.29 -2.39 -0.01 0.48 16 33 H 0.08 0.96 6.07 -2.38 -0.01 0.94 16 34 H 0.08 0.83 8.05 -2.39 -0.02 0.81 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.54 6.33 -2.39 -0.02 0.52 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.06 1.14 8.06 -2.39 -0.02 1.12 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.40 8.12 -2.39 -0.02 1.38 16 43 H 0.41 5.84 4.53 -92.71 -0.42 5.42 16 44 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 46 H 0.12 4.30 7.05 -2.91 -0.02 4.28 16 47 H 0.10 5.08 8.06 -2.91 -0.02 5.06 16 48 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 49 H 0.12 5.75 5.68 -2.91 -0.02 5.73 16 50 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -83.87 391.83 1.55 -82.32 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.54 Total: 31.84 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 5.63 Total: -34.61 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -6.39 Total: -88.26 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.25 Total: -37.87 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -83.87 1.55 -82.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255036515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.622 kcal (2) G-P(sol) polarization free energy of solvation -83.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds