Wall clock time and date at job start Wed Apr 1 2020 03:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46662 * 2 1 4 4 C 1.47908 * 110.99596 * 184.25088 * 3 2 1 5 5 C 1.53997 * 107.05256 * 145.84554 * 4 3 2 6 6 C 1.54586 * 105.14388 * 358.77673 * 5 4 3 7 7 H 1.09002 * 110.72325 * 96.39441 * 6 5 4 8 8 C 1.53001 * 110.72637 * 219.68636 * 6 5 4 9 9 N 1.46507 * 109.46715 * 293.54369 * 8 6 5 10 10 C 1.34771 * 119.99676 * 180.02562 * 9 8 6 11 11 O 1.21720 * 120.00480 * 0.02562 * 10 9 8 12 12 C 1.46259 * 119.99999 * 180.02562 * 10 9 8 13 13 C 1.35019 * 120.00186 * 172.69460 * 12 10 9 14 14 C 1.46957 * 119.99970 * 345.83189 * 13 12 10 15 15 C 1.40022 * 120.10415 * 317.94753 * 14 13 12 16 16 C 1.37600 * 119.90089 * 179.73857 * 15 14 13 17 17 C 1.39179 * 120.09614 * 0.51404 * 16 15 14 18 18 O 1.35566 * 119.89363 * 179.73886 * 17 16 15 19 19 C 1.34786 * 116.99990 * 186.32213 * 18 17 16 20 20 H 1.07996 * 119.99881 * 5.59543 * 19 18 17 21 21 C 1.38714 * 119.99907 * 185.59346 * 19 18 17 22 22 N 1.31504 * 120.00373 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99658 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47227 * 60.00390 * 23 21 19 25 25 H 1.48509 * 109.46962 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47106 * 299.99970 * 23 21 19 27 27 C 1.39172 * 120.20564 * 359.76659 * 17 16 15 28 28 C 1.37601 * 120.10015 * 359.97143 * 27 17 16 29 29 C 1.48524 * 111.00293 * 301.64966 * 3 2 1 30 30 H 1.08997 * 109.47338 * 65.17406 * 1 2 3 31 31 H 1.09002 * 109.46691 * 185.17700 * 1 2 3 32 32 H 1.09004 * 109.47172 * 305.17056 * 1 2 3 33 33 H 1.08999 * 109.46762 * 240.00215 * 2 1 3 34 34 H 1.08997 * 109.47579 * 120.00189 * 2 1 3 35 35 H 1.09000 * 109.91438 * 26.49772 * 4 3 2 36 36 H 1.08989 * 109.91874 * 265.20007 * 4 3 2 37 37 H 1.09006 * 110.30812 * 239.85621 * 5 4 3 38 38 H 1.09003 * 110.30367 * 117.69845 * 5 4 3 39 39 H 1.08997 * 109.47053 * 53.54375 * 8 6 5 40 40 H 1.09002 * 109.47011 * 173.54733 * 8 6 5 41 41 H 0.96997 * 120.00070 * 0.02562 * 9 8 6 42 42 H 1.08001 * 119.99735 * 352.68737 * 12 10 9 43 43 H 1.07997 * 120.00118 * 165.83594 * 13 12 10 44 44 H 1.08009 * 120.04974 * 359.97438 * 15 14 13 45 45 H 1.07996 * 119.94931 * 180.23257 * 16 15 14 46 46 H 0.97008 * 119.99870 * 180.02562 * 22 21 19 47 47 H 1.07999 * 119.94864 * 179.97438 * 27 17 16 48 48 H 1.08003 * 120.04377 * 180.02562 * 28 27 17 49 49 H 1.09003 * 110.66784 * 81.84765 * 29 3 2 50 50 H 1.09001 * 110.67211 * 318.71591 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4946 1.4258 -0.1024 5 6 3.8557 2.6762 -0.9255 6 6 2.5003 3.3154 -1.3048 7 1 2.2396 4.1100 -0.6057 8 6 2.5337 3.8442 -2.7401 9 7 3.4767 4.9621 -2.8268 10 6 3.6715 5.5896 -4.0035 11 8 3.0637 5.2279 -4.9941 12 6 4.6133 6.7053 -4.0902 13 6 4.9200 7.2380 -5.2923 14 6 4.5672 6.5207 -6.5255 15 6 4.7553 5.1358 -6.6107 16 6 4.4185 4.4675 -7.7654 17 6 3.9016 5.1678 -8.8515 18 8 3.5761 4.5060 -9.9891 19 6 3.2050 5.2539 -11.0472 20 1 3.2635 6.3310 -10.9942 21 6 2.7481 4.6402 -12.2042 22 7 2.6764 3.3287 -12.2686 23 14 2.2345 5.6768 -13.6710 24 1 3.3880 6.4922 -14.1290 25 1 1.7875 4.7877 -14.7733 26 1 1.1192 6.5745 -13.2765 27 6 3.7183 6.5451 -8.7735 28 6 4.0473 7.2209 -7.6209 29 6 1.5110 2.1294 -1.1803 30 1 -0.3634 0.4315 -0.9327 31 1 -0.3633 -1.0235 0.0927 32 1 -0.3634 0.5920 0.8401 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8565 0.5308 -0.6084 36 1 3.9340 1.4965 0.8925 37 1 4.4047 2.3923 -1.8235 38 1 4.4452 3.3679 -0.3237 39 1 2.8513 3.0479 -3.4133 40 1 1.5385 4.1854 -3.0249 41 1 3.9608 5.2506 -2.0373 42 1 5.0632 7.1031 -3.1926 43 1 5.4247 8.1912 -5.3477 44 1 5.1606 4.5923 -5.7699 45 1 4.5597 3.3988 -7.8307 46 1 2.3572 2.8995 -13.0779 47 1 3.3173 7.0844 -9.6189 48 1 3.9043 8.2898 -7.5612 49 1 0.4983 2.4904 -1.0005 50 1 1.5450 1.5049 -2.0730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255405078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:11 Heat of formation + Delta-G solvation = -34.320629 kcal Electronic energy + Delta-G solvation = -29062.990637 eV Core-core repulsion = 25055.392992 eV Total energy + Delta-G solvation = -4007.597645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.14532 -40.56169 -39.96694 -38.21920 -36.27484 -34.59436 -34.04109 -33.82201 -31.83185 -31.17555 -29.60712 -29.37427 -27.50234 -26.70588 -24.26840 -23.55588 -23.43009 -22.42343 -21.61246 -21.31001 -20.39518 -19.75281 -18.86162 -18.05661 -17.41948 -16.97489 -16.43587 -16.38201 -16.28548 -16.06769 -15.69019 -15.54113 -15.45191 -15.04643 -14.89224 -14.49889 -14.48415 -14.37408 -14.17242 -13.83636 -13.72038 -13.55004 -13.38182 -13.25999 -13.01850 -12.65103 -12.46362 -12.35371 -12.28129 -12.24352 -12.13050 -12.09345 -12.00494 -11.77540 -11.52336 -11.28132 -10.93659 -10.67738 -10.38169 -10.01536 -9.60143 -9.45524 -8.55833 -8.49488 -6.16394 -0.01067 0.70311 1.13203 1.33045 1.46656 1.50310 2.16826 2.34580 2.50223 2.86601 2.97718 3.22047 3.49470 3.60625 3.65198 3.82881 4.02319 4.07919 4.14372 4.16332 4.19340 4.23807 4.30671 4.35137 4.44626 4.54348 4.56992 4.60820 4.63884 4.67613 4.77242 4.77777 4.92126 4.92394 4.99555 5.03280 5.05284 5.09210 5.16097 5.23768 5.25555 5.27345 5.31662 5.46209 5.55211 5.67436 5.71960 5.85085 5.87132 6.01133 6.03915 6.24414 6.74776 6.94606 7.48166 7.76769 8.73966 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.002099 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.382118 B =13334.900828 C =15010.923180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.039 3.961 3 N -0.523 5.523 4 C 0.033 3.967 5 C -0.124 4.124 6 C -0.089 4.089 7 H 0.104 0.896 8 C 0.134 3.866 9 N -0.713 5.713 10 C 0.525 3.475 11 O -0.572 6.572 12 C -0.231 4.231 13 C 0.003 3.997 14 C -0.157 4.157 15 C 0.008 3.992 16 C -0.220 4.220 17 C 0.125 3.875 18 O -0.231 6.231 19 C -0.415 4.415 20 H 0.103 0.897 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.022 2.978 24 H -0.254 1.254 25 H -0.270 1.270 26 H -0.257 1.257 27 C -0.257 4.257 28 C -0.048 4.048 29 C 0.041 3.959 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.416 0.584 42 H 0.176 0.824 43 H 0.169 0.831 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.273 0.727 47 H 0.120 0.880 48 H 0.149 0.851 49 H 0.087 0.913 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 3.476 28.987 29.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 N -0.248 5.248 4 C -0.095 4.095 5 C -0.162 4.162 6 C -0.109 4.109 7 H 0.122 0.878 8 C 0.010 3.990 9 N -0.366 5.366 10 C 0.315 3.685 11 O -0.453 6.453 12 C -0.251 4.251 13 C -0.016 4.016 14 C -0.158 4.158 15 C -0.010 4.010 16 C -0.240 4.240 17 C 0.074 3.926 18 O -0.137 6.137 19 C -0.491 4.491 20 H 0.120 0.880 21 C -0.222 4.222 22 N -0.559 5.559 23 Si 0.841 3.159 24 H -0.178 1.178 25 H -0.195 1.195 26 H -0.182 1.182 27 C -0.276 4.276 28 C -0.066 4.066 29 C -0.088 4.088 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.253 0.747 42 H 0.193 0.807 43 H 0.187 0.813 44 H 0.137 0.863 45 H 0.119 0.881 46 H 0.082 0.918 47 H 0.138 0.862 48 H 0.166 0.834 49 H 0.106 0.894 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.238 2.995 28.615 28.858 hybrid contribution -0.124 -0.749 -1.521 1.700 sum 2.114 2.246 27.094 27.269 Atomic orbital electron populations 1.21790 0.94237 1.02528 1.02071 1.22316 0.96736 0.88914 1.00959 1.64872 1.07082 1.13685 1.39147 1.22928 0.88086 0.97514 1.00989 1.22494 0.96614 0.97080 0.99969 1.22202 0.95994 0.98065 0.94592 0.87779 1.21151 0.92877 0.88544 0.96474 1.45756 1.44941 1.34078 1.11777 1.19129 0.83476 0.83206 0.82666 1.91010 1.50964 1.66568 1.36729 1.23074 1.02383 0.99666 0.99979 1.22577 0.92143 0.97217 0.89649 1.18896 1.08221 0.93036 0.95648 1.20688 0.93545 0.93352 0.93442 1.20188 1.10256 0.99241 0.94299 1.20025 0.92958 0.92429 0.87137 1.83888 1.75253 1.36509 1.18081 1.21838 1.45089 0.91835 0.90341 0.88007 1.26695 0.96128 0.97696 1.01713 1.70174 1.45400 1.10561 1.29793 0.84611 0.79383 0.77088 0.74864 1.17827 1.19490 1.18173 1.21113 1.11691 0.93566 1.01250 1.21214 0.94807 0.99932 0.90687 1.23184 0.99415 0.94390 0.91787 0.93307 0.91183 0.91768 0.95344 0.89807 0.94146 0.89167 0.91961 0.88625 0.93799 0.93000 0.74702 0.80682 0.81339 0.86277 0.88137 0.91753 0.86198 0.83353 0.89419 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.59 71.98 0.69 -1.20 16 2 C 0.04 0.54 5.56 86.30 0.48 1.02 16 3 N -0.52 -7.83 5.35 -883.01 -4.73 -12.56 16 4 C 0.03 0.42 6.70 86.45 0.58 1.00 16 5 C -0.12 -1.44 6.20 31.47 0.19 -1.24 16 6 C -0.09 -1.21 3.13 -9.59 -0.03 -1.24 16 7 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 8 C 0.13 2.67 5.00 86.38 0.43 3.10 16 9 N -0.71 -12.80 5.40 -467.49 -2.52 -15.32 16 10 C 0.52 13.62 6.70 86.33 0.58 14.20 16 11 O -0.57 -21.91 12.45 -4.41 -0.05 -21.96 16 12 C -0.23 -4.36 9.86 23.62 0.23 -4.13 16 13 C 0.00 0.08 9.80 23.81 0.23 0.31 16 14 C -0.16 -5.46 4.51 -20.13 -0.09 -5.55 16 15 C 0.01 0.32 6.71 22.55 0.15 0.47 16 16 C -0.22 -10.85 9.97 22.35 0.22 -10.63 16 17 C 0.13 6.89 6.66 22.72 0.15 7.04 16 18 O -0.23 -14.91 9.74 -20.28 -0.20 -15.11 16 19 C -0.42 -25.41 9.43 67.93 0.64 -24.77 16 20 H 0.10 5.70 5.29 -2.91 -0.02 5.69 16 21 C -0.02 -1.48 5.49 84.86 0.47 -1.01 16 22 N -0.92 -58.77 13.67 21.62 0.30 -58.47 16 23 Si 1.02 44.29 29.55 68.60 2.03 46.31 16 24 H -0.25 -10.24 7.11 99.48 0.71 -9.54 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 27 C -0.26 -12.21 9.11 22.34 0.20 -12.00 16 28 C -0.05 -1.82 9.78 22.55 0.22 -1.60 16 29 C 0.04 0.64 4.81 86.65 0.42 1.06 16 30 H 0.05 0.69 7.18 -2.39 -0.02 0.67 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.03 0.43 7.97 -2.39 -0.02 0.41 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 0.56 7.67 -2.39 -0.02 0.54 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 0.88 7.80 -2.38 -0.02 0.86 16 38 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.04 1.09 8.07 -2.39 -0.02 1.07 16 40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.42 4.18 8.31 -92.71 -0.77 3.41 16 42 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.12 4.22 7.04 -2.91 -0.02 4.20 16 45 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 46 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 47 H 0.12 5.69 5.71 -2.91 -0.02 5.67 16 48 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 49 H 0.09 1.34 7.77 -2.39 -0.02 1.32 16 50 H 0.04 0.68 7.92 -2.39 -0.02 0.66 16 Total: -1.00 -83.61 404.77 0.76 -82.85 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.17 Total: 29.43 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 5.77 Total: -35.18 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -6.95 Total: -86.35 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.25 Total: -37.07 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -83.61 0.76 -82.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255405078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.530 kcal (2) G-P(sol) polarization free energy of solvation -83.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds