Wall clock time and date at job start Wed Apr 1 2020 03:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47070 * 2 1 4 4 C 1.46848 * 110.99697 * 66.05127 * 3 2 1 5 5 C 1.53037 * 109.52055 * 185.83484 * 4 3 2 6 6 C 1.53112 * 109.28308 * 300.82084 * 5 4 3 7 7 C 1.53116 * 109.16241 * 57.65419 * 6 5 4 8 8 H 1.09002 * 109.50466 * 62.32467 * 7 6 5 9 9 N 1.46499 * 109.50970 * 182.40622 * 7 6 5 10 10 C 1.34772 * 120.00040 * 274.92771 * 9 7 6 11 11 O 1.21723 * 119.99691 * 359.97438 * 10 9 7 12 12 C 1.46258 * 120.00146 * 179.97438 * 10 9 7 13 13 C 1.35016 * 119.99779 * 173.64777 * 12 10 9 14 14 C 1.46961 * 120.00381 * 348.83876 * 13 12 10 15 15 C 1.40022 * 120.10027 * 314.66895 * 14 13 12 16 16 C 1.37591 * 119.90162 * 179.97438 * 15 14 13 17 17 C 1.39184 * 120.09999 * 359.97260 * 16 15 14 18 18 O 1.35572 * 119.89679 * 180.02562 * 17 16 15 19 19 C 1.34776 * 117.00217 * 1.01977 * 18 17 16 20 20 H 1.07996 * 119.99896 * 355.09569 * 19 18 17 21 21 C 1.38715 * 120.00094 * 175.10244 * 19 18 17 22 22 N 1.31514 * 119.99930 * 0.27040 * 21 19 18 23 23 Si 1.86800 * 120.00318 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47377 * 89.99449 * 23 21 19 25 25 H 1.48504 * 109.47159 * 210.00071 * 23 21 19 26 26 H 1.48500 * 109.46850 * 329.99798 * 23 21 19 27 27 C 1.39174 * 120.20251 * 0.29793 * 17 16 15 28 28 C 1.37607 * 120.10166 * 359.45365 * 27 17 16 29 29 C 1.46851 * 110.99591 * 190.29794 * 3 2 1 30 30 H 1.08996 * 109.47493 * 59.99573 * 1 2 3 31 31 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46740 * 299.99732 * 1 2 3 33 33 H 1.09004 * 109.47119 * 240.00915 * 2 1 3 34 34 H 1.08996 * 109.47493 * 120.00427 * 2 1 3 35 35 H 1.09005 * 109.45876 * 65.82347 * 4 3 2 36 36 H 1.08991 * 109.46483 * 305.85162 * 4 3 2 37 37 H 1.09006 * 109.49999 * 180.88257 * 5 4 3 38 38 H 1.08995 * 109.50352 * 60.76412 * 5 4 3 39 39 H 1.09011 * 109.52085 * 297.75149 * 6 5 4 40 40 H 1.08992 * 109.52580 * 177.56242 * 6 5 4 41 41 H 0.96996 * 119.99854 * 94.91695 * 9 7 6 42 42 H 1.07994 * 119.99948 * 353.65556 * 12 10 9 43 43 H 1.08006 * 119.99941 * 168.83184 * 13 12 10 44 44 H 1.08002 * 120.04725 * 359.97438 * 15 14 13 45 45 H 1.07998 * 119.95420 * 180.02562 * 16 15 14 46 46 H 0.96995 * 119.99463 * 359.73136 * 22 21 19 47 47 H 1.07997 * 119.95012 * 179.70138 * 27 17 16 48 48 H 1.07994 * 120.05421 * 180.26964 * 28 27 17 49 49 H 1.09009 * 109.49485 * 54.16537 * 29 3 2 50 50 H 1.08997 * 109.43112 * 294.19791 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6704 2.0666 1.2529 5 6 2.0657 3.5421 1.1598 6 6 3.5714 3.6469 0.9026 7 6 3.9159 2.8881 -0.3819 8 1 3.4027 3.3493 -1.2258 9 7 5.3631 2.9348 -0.6046 10 6 5.9140 3.9904 -1.2360 11 8 5.2089 4.9047 -1.6216 12 6 7.3588 4.0374 -1.4579 13 6 7.8958 5.0286 -2.2008 14 6 7.0239 5.9136 -2.9858 15 6 5.9848 5.3745 -3.7541 16 6 5.1705 6.2069 -4.4871 17 6 5.3781 7.5830 -4.4652 18 8 4.5730 8.3994 -5.1886 19 6 3.5799 7.8160 -5.8885 20 1 3.5020 6.7393 -5.9203 21 6 2.6579 8.5985 -6.5681 22 7 2.7560 9.9095 -6.5337 23 14 1.2818 7.7900 -7.5387 24 1 0.1005 7.6007 -6.6591 25 1 0.9107 8.6561 -8.6866 26 1 1.7405 6.4704 -8.0423 27 6 6.4131 8.1229 -3.7075 28 6 7.2293 7.2986 -2.9673 29 6 3.4668 1.4314 -0.2451 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.2032 1.5994 2.0812 36 1 0.5964 1.9883 1.4218 37 1 1.8206 4.0442 2.0958 38 1 1.5229 4.0132 0.3404 39 1 4.1153 3.2104 1.7405 40 1 3.8501 4.6948 0.7925 41 1 5.9248 2.2062 -0.2975 42 1 7.9961 3.2791 -1.0276 43 1 8.9663 5.1713 -2.2182 44 1 5.8227 4.3068 -3.7713 45 1 4.3686 5.7920 -5.0796 46 1 3.4707 10.3293 -6.0300 47 1 6.5735 9.1909 -3.6973 48 1 8.0295 7.7188 -2.3762 49 1 3.6976 0.8924 -1.1640 50 1 3.9911 0.9667 0.5899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255577117.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:51 Heat of formation + Delta-G solvation = -16.282381 kcal Electronic energy + Delta-G solvation = -29959.051705 eV Core-core repulsion = 25952.236258 eV Total energy + Delta-G solvation = -4006.815448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.15422 -39.18062 -38.55043 -36.62701 -35.16832 -33.26425 -33.06624 -32.03594 -30.70802 -30.11386 -29.46297 -27.85947 -25.02347 -24.79007 -23.79183 -22.78526 -21.84174 -21.49734 -20.73076 -20.23183 -19.05381 -18.33707 -17.29536 -16.68633 -16.43487 -15.64686 -15.46056 -15.10756 -14.75116 -14.71923 -14.33574 -14.14967 -13.99924 -13.81106 -13.65109 -13.58936 -13.50946 -13.33849 -12.92700 -12.83783 -12.58793 -12.34901 -12.19092 -12.06783 -11.60670 -11.43096 -11.31671 -11.03402 -10.94763 -10.90365 -10.85103 -10.76203 -10.62747 -10.27968 -10.24373 -9.49543 -9.38350 -9.20481 -8.94641 -8.63360 -8.61294 -7.94384 -6.91649 -6.74656 -4.00256 1.24662 2.38884 2.67044 3.11385 3.27475 3.34268 3.47191 3.62791 3.79206 4.15275 4.51570 4.58897 4.70055 4.71239 4.78757 4.90891 5.04076 5.09651 5.10356 5.12620 5.16827 5.21203 5.23689 5.25433 5.40036 5.40838 5.48880 5.59097 5.63711 5.66819 5.72626 5.77588 5.81137 5.91965 5.93867 6.12211 6.19416 6.22754 6.30558 6.41149 6.52332 6.60030 6.73214 6.77357 6.81831 6.99480 7.20735 7.32129 7.47074 7.65515 7.69230 7.85079 8.43827 8.56836 8.94895 9.64930 10.69279 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.003095 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.641693 B = 9046.106218 C =11510.413050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 N -0.535 5.535 4 C 0.053 3.947 5 C -0.116 4.116 6 C -0.129 4.129 7 C 0.151 3.849 8 H 0.098 0.902 9 N -0.733 5.733 10 C 0.540 3.460 11 O -0.508 6.508 12 C -0.263 4.263 13 C 0.025 3.975 14 C -0.186 4.186 15 C 0.014 3.986 16 C -0.238 4.238 17 C 0.173 3.827 18 O -0.197 6.197 19 C -0.468 4.468 20 H 0.086 0.914 21 C 0.010 3.990 22 N -0.880 5.880 23 Si 1.098 2.902 24 H -0.280 1.280 25 H -0.275 1.275 26 H -0.282 1.282 27 C -0.212 4.212 28 C -0.046 4.046 29 C 0.054 3.946 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.031 0.969 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.393 0.607 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.283 0.717 47 H 0.113 0.887 48 H 0.110 0.890 49 H 0.079 0.921 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 -20.394 15.882 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.075 4.075 3 N -0.260 5.260 4 C -0.075 4.075 5 C -0.154 4.154 6 C -0.168 4.168 7 C 0.045 3.955 8 H 0.116 0.884 9 N -0.386 5.386 10 C 0.330 3.670 11 O -0.383 6.383 12 C -0.284 4.284 13 C 0.005 3.995 14 C -0.186 4.186 15 C -0.004 4.004 16 C -0.257 4.257 17 C 0.119 3.881 18 O -0.101 6.101 19 C -0.544 4.544 20 H 0.103 0.897 21 C -0.196 4.196 22 N -0.512 5.512 23 Si 0.922 3.078 24 H -0.206 1.206 25 H -0.200 1.200 26 H -0.208 1.208 27 C -0.231 4.231 28 C -0.064 4.064 29 C -0.075 4.075 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.226 0.774 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.116 0.884 45 H 0.143 0.857 46 H 0.093 0.907 47 H 0.131 0.869 48 H 0.128 0.872 49 H 0.098 0.902 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.234 -18.865 14.174 23.629 hybrid contribution 2.078 -1.414 2.065 3.253 sum 3.312 -20.279 16.239 26.190 Atomic orbital electron populations 1.21816 0.94637 1.01553 1.02779 1.22057 0.96347 0.88400 1.00681 1.61803 1.13165 1.15807 1.35269 1.22192 1.01013 0.94750 0.89525 1.21556 0.96012 0.95370 1.02510 1.21964 0.96009 1.01771 0.97089 1.20809 0.80975 0.94697 0.98992 0.88369 1.45969 1.07804 1.23190 1.61624 1.18476 0.88943 0.81963 0.77641 1.91008 1.63028 1.35586 1.48721 1.22632 0.93947 1.03621 1.08249 1.22327 0.98323 0.90369 0.88469 1.18298 1.01571 0.92936 1.05840 1.20551 0.90759 0.97538 0.91591 1.20965 1.04234 0.93136 1.07362 1.19383 0.90001 0.89614 0.89151 1.83595 1.38349 1.35177 1.52960 1.22305 1.07197 0.94374 1.30502 0.89678 1.26567 0.99881 0.95454 0.97657 1.70523 1.33375 1.09217 1.38053 0.83062 0.74013 0.74607 0.76075 1.20633 1.20037 1.20756 1.19962 0.99343 0.99341 1.04473 1.20603 0.97324 0.92086 0.96409 1.22244 0.87952 0.96406 1.00898 0.91533 0.92294 0.92620 0.90694 0.95074 0.95077 0.90253 0.91226 0.90497 0.92510 0.90865 0.77426 0.86183 0.86056 0.88444 0.85712 0.90733 0.86860 0.87162 0.90213 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.85 37.16 0.37 -0.70 16 2 C 0.05 0.41 5.68 -3.82 -0.02 0.39 16 3 N -0.54 -5.13 4.65 -234.66 -1.09 -6.23 16 4 C 0.05 0.47 5.29 -3.83 -0.02 0.45 16 5 C -0.12 -1.18 6.09 -26.65 -0.16 -1.34 16 6 C -0.13 -1.46 5.58 -26.61 -0.15 -1.61 16 7 C 0.15 1.76 2.62 -67.85 -0.18 1.58 16 8 H 0.10 1.51 7.58 -51.93 -0.39 1.12 16 9 N -0.73 -8.19 5.08 -55.17 -0.28 -8.47 16 10 C 0.54 8.01 6.82 -13.04 -0.09 7.92 16 11 O -0.51 -10.03 11.91 5.17 0.06 -9.97 16 12 C -0.26 -3.31 9.91 -37.51 -0.37 -3.68 16 13 C 0.02 0.35 9.79 -37.20 -0.36 -0.02 16 14 C -0.19 -3.45 4.47 -105.03 -0.47 -3.92 16 15 C 0.01 0.29 6.64 -39.15 -0.26 0.03 16 16 C -0.24 -5.71 9.14 -39.47 -0.36 -6.07 16 17 C 0.17 4.46 6.67 -38.88 -0.26 4.20 16 18 O -0.20 -5.81 9.15 0.75 0.01 -5.80 16 19 C -0.47 -13.70 9.48 30.91 0.29 -13.41 16 20 H 0.09 2.38 5.17 -52.49 -0.27 2.11 16 21 C 0.01 0.28 5.49 -17.51 -0.10 0.19 16 22 N -0.88 -26.89 13.70 55.48 0.76 -26.13 16 23 Si 1.10 24.53 29.92 -169.99 -5.09 19.44 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 C -0.21 -4.76 9.97 -39.46 -0.39 -5.15 16 28 C -0.05 -0.88 9.79 -39.14 -0.38 -1.26 16 29 C 0.05 0.50 4.93 -3.83 -0.02 0.48 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.38 6.44 -51.93 -0.33 0.05 16 33 H 0.07 0.56 7.98 -51.93 -0.41 0.14 16 34 H 0.03 0.22 8.12 -51.93 -0.42 -0.20 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.64 6.22 -51.93 -0.32 0.32 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.39 3.11 8.58 -40.82 -0.35 2.76 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 44 H 0.10 1.87 7.18 -52.49 -0.38 1.49 16 45 H 0.13 3.06 5.60 -52.49 -0.29 2.77 16 46 H 0.28 8.83 7.97 -40.82 -0.33 8.50 16 47 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 48 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 49 H 0.08 0.73 8.01 -51.92 -0.42 0.31 16 50 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 400.15 15.07 6.03 6.03 Total: -1.00 -34.08 400.15 -10.33 -44.41 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.79 Total: 8.64 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -2.94 Total: -21.93 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -0.61 Total: -40.83 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.07 Total: -15.77 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.09 Total: 19.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.08 -10.33 -44.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255577117.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.126 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds