Wall clock time and date at job start Wed Apr 1 2020 03:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47070 * 2 1 4 4 C 1.46848 * 110.99697 * 66.05127 * 3 2 1 5 5 C 1.53037 * 109.52055 * 185.83484 * 4 3 2 6 6 C 1.53112 * 109.28308 * 300.82084 * 5 4 3 7 7 C 1.53116 * 109.16241 * 57.65419 * 6 5 4 8 8 H 1.09002 * 109.50466 * 62.32467 * 7 6 5 9 9 N 1.46499 * 109.50970 * 182.40622 * 7 6 5 10 10 C 1.34772 * 120.00040 * 274.92771 * 9 7 6 11 11 O 1.21723 * 119.99691 * 359.97438 * 10 9 7 12 12 C 1.46258 * 120.00146 * 179.97438 * 10 9 7 13 13 C 1.35016 * 119.99779 * 173.64777 * 12 10 9 14 14 C 1.46961 * 120.00381 * 348.83876 * 13 12 10 15 15 C 1.40022 * 120.10027 * 314.66895 * 14 13 12 16 16 C 1.37591 * 119.90162 * 179.97438 * 15 14 13 17 17 C 1.39184 * 120.09999 * 359.97260 * 16 15 14 18 18 O 1.35572 * 119.89679 * 180.02562 * 17 16 15 19 19 C 1.34776 * 117.00217 * 1.01977 * 18 17 16 20 20 H 1.07996 * 119.99896 * 355.09569 * 19 18 17 21 21 C 1.38715 * 120.00094 * 175.10244 * 19 18 17 22 22 N 1.31514 * 119.99930 * 0.27040 * 21 19 18 23 23 Si 1.86800 * 120.00318 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47377 * 89.99449 * 23 21 19 25 25 H 1.48504 * 109.47159 * 210.00071 * 23 21 19 26 26 H 1.48500 * 109.46850 * 329.99798 * 23 21 19 27 27 C 1.39174 * 120.20251 * 0.29793 * 17 16 15 28 28 C 1.37607 * 120.10166 * 359.45365 * 27 17 16 29 29 C 1.46851 * 110.99591 * 190.29794 * 3 2 1 30 30 H 1.08996 * 109.47493 * 59.99573 * 1 2 3 31 31 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46740 * 299.99732 * 1 2 3 33 33 H 1.09004 * 109.47119 * 240.00915 * 2 1 3 34 34 H 1.08996 * 109.47493 * 120.00427 * 2 1 3 35 35 H 1.09005 * 109.45876 * 65.82347 * 4 3 2 36 36 H 1.08991 * 109.46483 * 305.85162 * 4 3 2 37 37 H 1.09006 * 109.49999 * 180.88257 * 5 4 3 38 38 H 1.08995 * 109.50352 * 60.76412 * 5 4 3 39 39 H 1.09011 * 109.52085 * 297.75149 * 6 5 4 40 40 H 1.08992 * 109.52580 * 177.56242 * 6 5 4 41 41 H 0.96996 * 119.99854 * 94.91695 * 9 7 6 42 42 H 1.07994 * 119.99948 * 353.65556 * 12 10 9 43 43 H 1.08006 * 119.99941 * 168.83184 * 13 12 10 44 44 H 1.08002 * 120.04725 * 359.97438 * 15 14 13 45 45 H 1.07998 * 119.95420 * 180.02562 * 16 15 14 46 46 H 0.96995 * 119.99463 * 359.73136 * 22 21 19 47 47 H 1.07997 * 119.95012 * 179.70138 * 27 17 16 48 48 H 1.07994 * 120.05421 * 180.26964 * 28 27 17 49 49 H 1.09009 * 109.49485 * 54.16537 * 29 3 2 50 50 H 1.08997 * 109.43112 * 294.19791 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6704 2.0666 1.2529 5 6 2.0657 3.5421 1.1598 6 6 3.5714 3.6469 0.9026 7 6 3.9159 2.8881 -0.3819 8 1 3.4027 3.3493 -1.2258 9 7 5.3631 2.9348 -0.6046 10 6 5.9140 3.9904 -1.2360 11 8 5.2089 4.9047 -1.6216 12 6 7.3588 4.0374 -1.4579 13 6 7.8958 5.0286 -2.2008 14 6 7.0239 5.9136 -2.9858 15 6 5.9848 5.3745 -3.7541 16 6 5.1705 6.2069 -4.4871 17 6 5.3781 7.5830 -4.4652 18 8 4.5730 8.3994 -5.1886 19 6 3.5799 7.8160 -5.8885 20 1 3.5020 6.7393 -5.9203 21 6 2.6579 8.5985 -6.5681 22 7 2.7560 9.9095 -6.5337 23 14 1.2818 7.7900 -7.5387 24 1 0.1005 7.6007 -6.6591 25 1 0.9107 8.6561 -8.6866 26 1 1.7405 6.4704 -8.0423 27 6 6.4131 8.1229 -3.7075 28 6 7.2293 7.2986 -2.9673 29 6 3.4668 1.4314 -0.2451 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.2032 1.5994 2.0812 36 1 0.5964 1.9883 1.4218 37 1 1.8206 4.0442 2.0958 38 1 1.5229 4.0132 0.3404 39 1 4.1153 3.2104 1.7405 40 1 3.8501 4.6948 0.7925 41 1 5.9248 2.2062 -0.2975 42 1 7.9961 3.2791 -1.0276 43 1 8.9663 5.1713 -2.2182 44 1 5.8227 4.3068 -3.7713 45 1 4.3686 5.7920 -5.0796 46 1 3.4707 10.3293 -6.0300 47 1 6.5735 9.1909 -3.6973 48 1 8.0295 7.7188 -2.3762 49 1 3.6976 0.8924 -1.1640 50 1 3.9911 0.9667 0.5899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255577117.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:49 Heat of formation + Delta-G solvation = -40.079207 kcal Electronic energy + Delta-G solvation = -29960.083613 eV Core-core repulsion = 25952.236258 eV Total energy + Delta-G solvation = -4007.847355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.31722 -40.72583 -39.77887 -38.29713 -36.19031 -34.67361 -34.20808 -33.82763 -31.86928 -31.48436 -30.43471 -29.30801 -26.99309 -25.72284 -24.90342 -23.81354 -23.47923 -22.78182 -21.82155 -21.16736 -20.36505 -20.13025 -18.95021 -17.97265 -17.52812 -16.97935 -16.62790 -16.15904 -16.09178 -15.82903 -15.66637 -15.62726 -15.36833 -15.20212 -15.09816 -14.91661 -14.61504 -14.44200 -14.28925 -14.07453 -13.95907 -13.43594 -13.02688 -12.92474 -12.81437 -12.71996 -12.55888 -12.43505 -12.40532 -12.15268 -12.10567 -11.94794 -11.83483 -11.59216 -11.53075 -11.33636 -10.94814 -10.66209 -10.42911 -10.04740 -9.62335 -9.30228 -8.99442 -8.64612 -6.26483 -0.02990 0.64173 1.06726 1.43942 1.58650 1.74387 2.19105 2.32083 2.46525 2.85829 3.03178 3.14325 3.33016 3.67313 3.79034 3.92732 3.97510 4.00346 4.03093 4.08440 4.14969 4.25778 4.28238 4.39403 4.48826 4.49360 4.54365 4.60909 4.62833 4.65262 4.67120 4.80034 4.88994 4.96830 4.97981 5.02961 5.08492 5.14594 5.15751 5.19012 5.27395 5.28671 5.37276 5.42827 5.54571 5.61023 5.71504 5.80405 6.04848 6.09123 6.12078 6.29275 6.72030 6.82688 7.46255 7.58771 8.45867 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.003095 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.641693 B = 9046.106218 C =11510.413050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 N -0.559 5.559 4 C 0.058 3.942 5 C -0.115 4.115 6 C -0.123 4.123 7 C 0.152 3.848 8 H 0.051 0.949 9 N -0.711 5.711 10 C 0.526 3.474 11 O -0.567 6.567 12 C -0.226 4.226 13 C 0.002 3.998 14 C -0.153 4.153 15 C 0.010 3.990 16 C -0.253 4.253 17 C 0.126 3.874 18 O -0.249 6.249 19 C -0.488 4.488 20 H 0.085 0.915 21 C -0.043 4.043 22 N -0.914 5.914 23 Si 1.146 2.854 24 H -0.266 1.266 25 H -0.266 1.266 26 H -0.261 1.261 27 C -0.221 4.221 28 C -0.047 4.047 29 C 0.063 3.937 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.415 0.585 42 H 0.177 0.823 43 H 0.173 0.827 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.260 0.740 47 H 0.116 0.884 48 H 0.158 0.842 49 H 0.082 0.918 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.919 -24.963 19.024 31.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.073 4.073 3 N -0.285 5.285 4 C -0.069 4.069 5 C -0.154 4.154 6 C -0.162 4.162 7 C 0.046 3.954 8 H 0.069 0.931 9 N -0.364 5.364 10 C 0.316 3.684 11 O -0.447 6.447 12 C -0.246 4.246 13 C -0.018 4.018 14 C -0.154 4.154 15 C -0.008 4.008 16 C -0.273 4.273 17 C 0.076 3.924 18 O -0.156 6.156 19 C -0.564 4.564 20 H 0.102 0.898 21 C -0.239 4.239 22 N -0.549 5.549 23 Si 0.962 3.038 24 H -0.191 1.191 25 H -0.190 1.190 26 H -0.185 1.185 27 C -0.240 4.240 28 C -0.065 4.065 29 C -0.065 4.065 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.252 0.748 42 H 0.194 0.806 43 H 0.190 0.810 44 H 0.130 0.870 45 H 0.122 0.878 46 H 0.069 0.931 47 H 0.134 0.866 48 H 0.176 0.824 49 H 0.100 0.900 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.857 -23.530 17.384 29.508 hybrid contribution 1.558 -0.324 1.491 2.181 sum 5.415 -23.854 18.875 30.896 Atomic orbital electron populations 1.21806 0.94454 1.02336 1.02020 1.22093 0.96485 0.87294 1.01449 1.61770 1.13451 1.17265 1.35989 1.22143 1.01679 0.93331 0.89767 1.21544 0.94944 0.96839 1.02056 1.21879 0.97048 0.99661 0.97582 1.20711 0.80873 0.96424 0.97364 0.93075 1.45776 1.07905 1.22779 1.59918 1.19158 0.90130 0.81824 0.77261 1.91020 1.64598 1.38008 1.51121 1.23108 0.92624 1.02950 1.05947 1.22596 0.99932 0.89950 0.89280 1.18916 0.99696 0.93698 1.03059 1.20737 0.91002 0.97814 0.91282 1.20993 1.04880 0.93136 1.08243 1.19951 0.91165 0.90407 0.90886 1.83571 1.40031 1.36323 1.55691 1.22600 1.07951 0.94597 1.31260 0.89785 1.28426 1.02013 0.95293 0.98170 1.70660 1.33672 1.10301 1.40247 0.82577 0.71394 0.74680 0.75186 1.19076 1.19032 1.18513 1.20310 0.98983 1.00267 1.04420 1.21137 0.97535 0.92178 0.95656 1.22131 0.88208 0.94167 1.02032 0.93248 0.90751 0.92420 0.90467 0.93614 0.93420 0.89594 0.89848 0.93372 0.90194 0.94363 0.74776 0.80565 0.81002 0.87043 0.87762 0.93129 0.86643 0.82428 0.89967 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.85 71.98 0.71 -1.14 16 2 C 0.05 0.70 5.68 86.30 0.49 1.19 16 3 N -0.56 -9.72 4.65 -896.34 -4.17 -13.89 16 4 C 0.06 0.91 5.29 86.33 0.46 1.37 16 5 C -0.12 -2.29 6.09 30.64 0.19 -2.11 16 6 C -0.12 -2.67 5.58 30.67 0.17 -2.49 16 7 C 0.15 3.39 2.62 45.04 0.12 3.50 16 8 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 9 N -0.71 -13.63 5.08 -446.66 -2.27 -15.89 16 10 C 0.53 14.07 6.82 86.33 0.59 14.66 16 11 O -0.57 -22.31 11.91 -4.42 -0.05 -22.36 16 12 C -0.23 -4.31 9.91 23.61 0.23 -4.08 16 13 C 0.00 0.04 9.79 23.82 0.23 0.27 16 14 C -0.15 -5.33 4.47 -20.13 -0.09 -5.42 16 15 C 0.01 0.41 6.64 22.55 0.15 0.56 16 16 C -0.25 -12.95 9.14 22.34 0.20 -12.75 16 17 C 0.13 6.99 6.67 22.72 0.15 7.14 16 18 O -0.25 -16.06 9.15 -20.24 -0.19 -16.24 16 19 C -0.49 -31.03 9.48 67.93 0.64 -30.39 16 20 H 0.08 5.13 5.17 -2.91 -0.02 5.11 16 21 C -0.04 -2.62 5.49 84.85 0.47 -2.16 16 22 N -0.91 -60.01 13.70 21.62 0.30 -59.72 16 23 Si 1.15 51.65 29.92 68.60 2.05 53.71 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 27 C -0.22 -10.27 9.97 22.35 0.22 -10.05 16 28 C -0.05 -1.73 9.79 22.55 0.22 -1.51 16 29 C 0.06 1.00 4.93 86.33 0.43 1.43 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.69 6.44 -2.39 -0.02 0.67 16 33 H 0.08 0.96 7.98 -2.38 -0.02 0.94 16 34 H 0.05 0.48 8.12 -2.39 -0.02 0.46 16 35 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.09 1.24 6.22 -2.39 -0.01 1.22 16 37 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.42 4.40 8.58 -92.71 -0.80 3.60 16 42 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.11 4.22 7.18 -2.91 -0.02 4.20 16 45 H 0.10 5.61 5.60 -2.91 -0.02 5.59 16 46 H 0.26 17.80 7.97 -92.71 -0.74 17.06 16 47 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 48 H 0.16 4.26 8.06 -2.91 -0.02 4.23 16 49 H 0.08 1.28 8.01 -2.38 -0.02 1.26 16 50 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -86.40 400.15 1.43 -84.96 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.18 Total: 31.39 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 5.58 Total: -41.96 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -6.14 Total: -89.49 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.24 Total: -38.61 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.05 Total: 53.71 kcal Total: -86.40 1.43 -84.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255577117.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.883 kcal (2) G-P(sol) polarization free energy of solvation -86.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds