Wall clock time and date at job start Wed Apr 1 2020 02:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46743 * 2 1 4 4 C 1.53002 * 109.46981 * 119.99811 * 2 1 3 5 5 N 1.46498 * 109.47162 * 175.00492 * 4 2 1 6 6 C 1.34773 * 120.00102 * 179.97438 * 5 4 2 7 7 O 1.21716 * 120.00412 * 0.02562 * 6 5 4 8 8 C 1.46258 * 119.99912 * 179.97438 * 6 5 4 9 9 C 1.35030 * 119.99739 * 173.07049 * 8 6 5 10 10 C 1.46960 * 120.00136 * 348.87438 * 9 8 6 11 11 C 1.40024 * 120.09815 * 311.81757 * 10 9 8 12 12 C 1.37606 * 119.89488 * 179.69667 * 11 10 9 13 13 C 1.39174 * 120.09961 * 0.60118 * 12 11 10 14 14 O 1.35565 * 119.89871 * 179.69708 * 13 12 11 15 15 C 1.34781 * 117.00024 * 185.62049 * 14 13 12 16 16 H 1.07999 * 120.00310 * 354.89901 * 15 14 13 17 17 C 1.38718 * 120.00004 * 174.90944 * 15 14 13 18 18 N 1.31508 * 120.00032 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47316 * 59.99796 * 19 17 15 21 21 H 1.48501 * 109.47438 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47196 * 299.99657 * 19 17 15 23 23 C 1.39183 * 120.20407 * 359.67509 * 13 12 11 24 24 C 1.37602 * 120.10102 * 0.02562 * 23 13 12 25 25 N 1.46895 * 109.47352 * 239.99565 * 2 1 3 26 26 C 1.46893 * 111.00355 * 306.04824 * 25 2 1 27 27 C 1.46901 * 110.99949 * 69.99890 * 25 2 1 28 28 C 1.52997 * 117.50073 * 243.74786 * 27 25 2 29 29 C 1.53001 * 117.50082 * 175.08279 * 27 25 2 30 30 H 1.08999 * 109.47062 * 60.00442 * 1 2 3 31 31 H 1.09002 * 109.46743 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47451 * 300.00070 * 1 2 3 33 33 H 1.08994 * 109.47392 * 55.00405 * 4 2 1 34 34 H 1.09006 * 109.47209 * 295.00078 * 4 2 1 35 35 H 0.97002 * 120.00139 * 359.97438 * 5 4 2 36 36 H 1.07998 * 120.00043 * 353.07777 * 8 6 5 37 37 H 1.08005 * 119.99376 * 169.14915 * 9 8 6 38 38 H 1.07999 * 120.05528 * 0.02562 * 11 10 9 39 39 H 1.08000 * 119.94917 * 180.27627 * 12 11 10 40 40 H 0.97003 * 119.99931 * 179.97438 * 18 17 15 41 41 H 1.07995 * 119.94823 * 180.02562 * 23 13 12 42 42 H 1.07988 * 120.05253 * 180.02562 * 24 23 13 43 43 H 1.08999 * 109.47473 * 59.99645 * 26 25 2 44 44 H 1.09003 * 109.47746 * 179.97438 * 26 25 2 45 45 H 1.09007 * 109.47174 * 299.99983 * 26 25 2 46 46 H 1.09004 * 115.55076 * 29.41828 * 27 25 2 47 47 H 1.08992 * 117.49867 * 0.02562 * 28 27 25 48 48 H 1.09004 * 117.49608 * 145.01961 * 28 27 25 49 49 H 1.09001 * 117.50122 * 214.98172 * 29 27 25 50 50 H 1.08997 * 117.49923 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4281 2.1913 7 8 3.5678 -1.8848 3.1435 8 6 5.6306 -1.5334 2.1326 9 6 6.3165 -2.0086 3.1942 10 6 5.6390 -2.1889 4.4858 11 6 4.8483 -1.1609 5.0136 12 6 4.2108 -1.3366 6.2203 13 6 4.3610 -2.5291 6.9220 14 8 3.7360 -2.6955 8.1134 15 6 4.0134 -3.8231 8.7976 16 1 4.6414 -4.5824 8.3555 17 6 3.4920 -4.0085 10.0696 18 7 2.7275 -3.0839 10.6081 19 14 3.8757 -5.5717 11.0177 20 1 5.3437 -5.6853 11.2115 21 1 3.2043 -5.5253 12.3414 22 1 3.3849 -6.7469 10.2540 23 6 5.1506 -3.5516 6.4040 24 6 5.7870 -3.3871 5.1951 25 7 2.0197 -0.6926 -1.1993 26 6 1.4344 -2.0355 -1.3077 27 6 1.7530 0.0971 -2.4090 28 6 0.8026 -0.5013 -3.4480 29 6 2.3048 -0.4323 -3.7342 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1371 35 1 3.9824 -0.4627 0.4317 36 1 6.1583 -1.2311 1.2401 37 1 7.3641 -2.2518 3.0953 38 1 4.7347 -0.2335 4.4719 39 1 3.5971 -0.5459 6.6261 40 1 2.3626 -3.2137 11.4975 41 1 5.2640 -4.4754 6.9517 42 1 6.3991 -4.1811 4.7937 43 1 0.3491 -1.9550 -1.3693 44 1 1.8134 -2.5258 -2.2044 45 1 1.7060 -2.6221 -0.4300 46 1 1.7299 1.1779 -2.2693 47 1 0.3749 -1.4807 -3.2338 48 1 0.1546 0.1858 -3.9921 49 1 2.6444 0.3002 -4.4665 50 1 2.8654 -1.3667 -3.7086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255693697.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:51 Heat of formation + Delta-G solvation = 29.457996 kcal Electronic energy + Delta-G solvation = -29370.617422 eV Core-core repulsion = 25365.785426 eV Total energy + Delta-G solvation = -4004.831996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.06658 -39.32660 -38.57658 -36.60142 -35.86001 -33.45338 -32.96673 -32.06410 -30.48974 -30.06228 -28.22397 -26.96693 -26.49544 -25.30537 -22.91232 -22.72563 -21.74247 -21.62101 -20.78937 -19.89896 -18.99465 -17.86645 -17.39139 -17.10254 -16.54661 -16.17648 -15.40000 -15.22297 -14.83431 -14.53210 -14.47761 -14.18623 -13.95052 -13.71302 -13.51114 -13.33224 -13.09336 -13.05512 -12.78559 -12.63367 -12.44866 -12.35956 -12.19064 -12.10273 -11.85365 -11.67973 -11.65193 -11.27460 -11.15502 -11.08437 -10.92997 -10.66412 -10.63708 -10.59304 -10.39333 -9.41625 -9.30676 -9.10808 -8.79981 -8.65158 -8.52299 -7.90277 -6.81771 -6.40807 -3.96835 1.37580 2.47604 2.72358 3.16471 3.17287 3.18774 3.20210 3.46686 3.67639 3.75751 4.01192 4.37226 4.49525 4.54261 4.60741 4.73902 4.76921 4.90715 4.92588 5.14961 5.17565 5.22617 5.24656 5.28783 5.32569 5.37236 5.39612 5.42530 5.49872 5.63263 5.68378 5.70248 5.73033 5.77886 5.80111 5.88025 5.90787 6.30324 6.41456 6.51043 6.57495 6.65430 6.65890 6.75679 6.84996 7.09381 7.17109 7.41517 7.50582 7.55687 7.86758 7.98132 8.05872 8.69045 9.04901 9.77903 10.77192 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.001998 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.560276 B =14013.328125 C =14739.185941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.069 3.931 3 H 0.090 0.910 4 C 0.131 3.869 5 N -0.725 5.725 6 C 0.536 3.464 7 O -0.516 6.516 8 C -0.256 4.256 9 C 0.019 3.981 10 C -0.177 4.177 11 C 0.000 4.000 12 C -0.198 4.198 13 C 0.168 3.832 14 O -0.175 6.175 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.246 4.246 24 C -0.046 4.046 25 N -0.500 5.500 26 C 0.013 3.987 27 C 0.023 3.977 28 C -0.220 4.220 29 C -0.171 4.171 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.402 0.598 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.270 0.730 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.117 0.883 47 H 0.099 0.901 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 6.423 -26.957 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.039 4.039 3 H 0.108 0.892 4 C 0.007 3.993 5 N -0.378 5.378 6 C 0.325 3.675 7 O -0.393 6.393 8 C -0.277 4.277 9 C 0.000 4.000 10 C -0.178 4.178 11 C -0.018 4.018 12 C -0.218 4.218 13 C 0.114 3.886 14 O -0.078 6.078 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.266 4.266 24 C -0.064 4.064 25 N -0.222 5.222 26 C -0.135 4.135 27 C -0.086 4.086 28 C -0.259 4.259 29 C -0.208 4.208 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.236 0.764 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.143 0.857 42 H 0.123 0.877 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.134 0.866 47 H 0.118 0.882 48 H 0.110 0.890 49 H 0.114 0.886 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.143 6.204 -25.815 26.550 hybrid contribution -0.531 -0.597 -0.270 0.843 sum -0.674 5.608 -26.085 26.690 Atomic orbital electron populations 1.22391 0.96105 1.02910 1.02790 1.22033 0.93763 0.98480 0.89634 0.89232 1.21271 0.81403 1.00592 0.96070 1.45784 1.06762 1.61018 1.24237 1.18482 0.88537 0.78307 0.82140 1.90996 1.70029 1.46379 1.31891 1.22679 0.93173 1.11444 1.00398 1.22326 0.97848 0.88434 0.91426 1.18280 1.06889 0.96825 0.95823 1.20418 0.92035 0.96607 0.92768 1.19998 1.07269 0.96963 0.97543 1.19516 0.89638 0.92773 0.86717 1.83906 1.57065 1.40814 1.25968 1.21326 1.32480 0.94912 0.97869 0.89021 1.25308 0.96172 0.99192 0.95923 1.70016 1.30338 1.33233 1.16061 0.85779 0.78880 0.80156 0.78599 1.19484 1.20306 1.19503 1.20953 1.05875 1.00952 0.98784 1.20714 0.97044 0.95353 0.93312 1.62031 1.56939 1.02465 1.00753 1.22582 0.97740 0.90185 1.02995 1.22630 1.02728 0.97066 0.86216 1.23561 0.93533 1.03613 1.05172 1.23067 0.95823 1.03524 0.98434 0.92030 0.91785 0.91430 0.91778 0.91087 0.76364 0.86198 0.86162 0.88120 0.86895 0.91988 0.85715 0.87690 0.94345 0.91404 0.90686 0.86561 0.88248 0.89012 0.88577 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 8.49 37.16 0.32 -0.96 16 2 C 0.07 0.53 2.44 -67.71 -0.17 0.36 16 3 H 0.09 0.63 7.96 -51.93 -0.41 0.22 16 4 C 0.13 1.40 4.84 -4.04 -0.02 1.38 16 5 N -0.72 -8.21 5.38 -61.76 -0.33 -8.54 16 6 C 0.54 8.06 6.94 -13.04 -0.09 7.97 16 7 O -0.52 -10.24 12.49 5.17 0.06 -10.18 16 8 C -0.26 -3.33 9.93 -37.50 -0.37 -3.70 16 9 C 0.02 0.28 9.77 -37.19 -0.36 -0.08 16 10 C -0.18 -3.35 4.34 -105.03 -0.46 -3.80 16 11 C 0.00 0.01 6.78 -39.14 -0.27 -0.26 16 12 C -0.20 -4.64 9.97 -39.46 -0.39 -5.03 16 13 C 0.17 4.36 6.66 -38.88 -0.26 4.10 16 14 O -0.17 -5.22 9.74 0.76 0.01 -5.22 16 15 C -0.39 -11.26 9.48 30.91 0.29 -10.97 16 16 H 0.09 2.45 5.18 -52.49 -0.27 2.18 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 19 Si 0.94 21.00 29.55 -169.99 -5.02 15.97 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 23 C -0.25 -5.75 9.14 -39.46 -0.36 -6.11 16 24 C -0.05 -0.92 9.78 -39.15 -0.38 -1.30 16 25 N -0.50 -3.68 4.36 -226.91 -0.99 -4.67 16 26 C 0.01 0.10 7.41 60.06 0.45 0.54 16 27 C 0.02 0.14 5.20 -67.71 -0.35 -0.21 16 28 C -0.22 -1.28 9.51 -26.69 -0.25 -1.53 16 29 C -0.17 -1.01 9.99 -26.69 -0.27 -1.27 16 30 H 0.06 0.39 7.52 -51.93 -0.39 0.00 16 31 H 0.06 0.48 6.33 -51.93 -0.33 0.15 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.78 6.80 -51.93 -0.35 0.43 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.40 3.71 8.12 -40.82 -0.33 3.38 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.10 1.85 7.46 -52.49 -0.39 1.46 16 39 H 0.11 2.57 8.06 -52.49 -0.42 2.14 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 41 H 0.13 2.88 5.62 -52.49 -0.29 2.58 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 43 H 0.04 0.27 5.30 -51.93 -0.28 0.00 16 44 H 0.07 0.49 6.63 -51.93 -0.34 0.14 16 45 H 0.07 0.69 6.58 -51.93 -0.34 0.35 16 46 H 0.12 0.66 7.93 -51.93 -0.41 0.25 16 47 H 0.10 0.61 5.89 -51.93 -0.31 0.30 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.10 0.62 7.56 -51.93 -0.39 0.23 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -33.67 400.66 -9.88 -43.55 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.36 Total: 8.00 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -3.04 Total: -19.90 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.56 Total: -38.28 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.07 Total: -15.39 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.67 -9.88 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255693697.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.010 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds