Wall clock time and date at job start Wed Apr 1 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47354 * 2 1 4 4 C 1.52998 * 109.47094 * 239.99881 * 2 1 3 5 5 N 1.46501 * 109.46945 * 184.99796 * 4 2 1 6 6 C 1.34780 * 119.99779 * 179.97438 * 5 4 2 7 7 O 1.21723 * 120.00044 * 0.02562 * 6 5 4 8 8 C 1.46256 * 120.00094 * 180.02562 * 6 5 4 9 9 C 1.35017 * 120.00241 * 173.20946 * 8 6 5 10 10 C 1.46966 * 119.99766 * 348.69003 * 9 8 6 11 11 C 1.40019 * 120.10161 * 316.39899 * 10 9 8 12 12 C 1.37600 * 119.89472 * 179.69633 * 11 10 9 13 13 C 1.39172 * 120.10338 * 0.60334 * 12 11 10 14 14 O 1.35568 * 119.89834 * 179.69358 * 13 12 11 15 15 C 1.34788 * 116.99752 * 174.34082 * 14 13 12 16 16 H 1.07990 * 120.00222 * 5.06233 * 15 14 13 17 17 C 1.38719 * 119.99773 * 185.06327 * 15 14 13 18 18 N 1.31509 * 120.00002 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46759 * 59.99689 * 19 17 15 21 21 H 1.48495 * 109.47180 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46838 * 299.99819 * 19 17 15 23 23 C 1.39174 * 120.20260 * 359.67915 * 13 12 11 24 24 C 1.37596 * 120.10045 * 0.02562 * 23 13 12 25 25 N 1.46897 * 109.47376 * 119.99781 * 2 1 3 26 26 C 1.46906 * 110.99949 * 58.95151 * 25 2 1 27 27 C 1.46900 * 110.99932 * 295.00097 * 25 2 1 28 28 C 1.53000 * 117.50006 * 248.61573 * 27 25 2 29 29 C 1.52995 * 60.00274 * 252.51063 * 28 27 25 30 30 H 1.09008 * 109.47000 * 299.99961 * 1 2 3 31 31 H 1.08997 * 109.47147 * 59.99941 * 1 2 3 32 32 H 1.08996 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47170 * 304.99854 * 4 2 1 34 34 H 1.09007 * 109.47031 * 65.00325 * 4 2 1 35 35 H 0.97001 * 120.00275 * 0.02562 * 5 4 2 36 36 H 1.07995 * 119.99716 * 353.22066 * 8 6 5 37 37 H 1.08002 * 120.00386 * 168.68385 * 9 8 6 38 38 H 1.07999 * 120.05207 * 0.02562 * 11 10 9 39 39 H 1.08006 * 119.94794 * 180.27715 * 12 11 10 40 40 H 0.97003 * 120.00081 * 180.02562 * 18 17 15 41 41 H 1.08007 * 119.94936 * 180.02562 * 23 13 12 42 42 H 1.08002 * 120.04775 * 180.02562 * 24 23 13 43 43 H 1.08997 * 109.46739 * 60.00218 * 26 25 2 44 44 H 1.08998 * 109.46971 * 180.02562 * 26 25 2 45 45 H 1.08998 * 109.47101 * 300.00195 * 26 25 2 46 46 H 1.08998 * 115.55463 * 34.33027 * 27 25 2 47 47 H 1.09006 * 117.49579 * 0.02562 * 28 27 25 48 48 H 1.09003 * 117.50079 * 145.02139 * 28 27 25 49 49 H 1.08997 * 117.50138 * 252.50812 * 29 28 27 50 50 H 1.09007 * 117.49833 * 107.49025 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.1730 -1.4292 -2.1907 7 8 3.5677 -1.8859 -3.1429 8 6 5.6305 -1.5346 -2.1319 9 6 6.2933 -2.2558 -3.0611 10 6 5.5509 -3.1328 -3.9775 11 6 4.5181 -3.9436 -3.4912 12 6 3.8217 -4.7584 -4.3540 13 6 4.1508 -4.7869 -5.7059 14 8 3.4661 -5.5959 -6.5512 15 6 3.7527 -5.4920 -7.8642 16 1 4.5548 -4.8477 -8.1924 17 6 3.0173 -6.2126 -8.7937 18 7 2.0408 -6.9975 -8.3939 19 14 3.4139 -6.0681 -10.6134 20 1 4.8146 -6.5009 -10.8505 21 1 2.4907 -6.9327 -11.3915 22 1 3.2523 -4.6564 -11.0447 23 6 5.1806 -3.9872 -6.1928 24 6 5.8784 -3.1647 -5.3385 25 7 2.0197 -0.6924 1.1994 26 6 1.5283 -2.0761 1.2460 27 6 1.6487 0.0393 2.4180 28 6 2.7747 0.7001 3.2156 29 6 2.0864 -0.5536 3.7589 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7198 -1.2951 34 1 1.7516 -0.1583 -2.1370 35 1 3.9823 -0.4627 -0.4315 36 1 6.1767 -1.0357 -1.3451 37 1 7.3689 -2.1883 -3.1311 38 1 4.2649 -3.9254 -2.4414 39 1 3.0219 -5.3808 -3.9805 40 1 1.5267 -7.5018 -9.0439 41 1 5.4323 -4.0122 -7.2428 42 1 6.6771 -2.5442 -5.7174 43 1 1.8762 -2.6150 0.3648 44 1 1.9053 -2.5654 2.1440 45 1 0.4385 -2.0742 1.2640 46 1 0.6874 0.5520 2.3843 47 1 3.7908 0.5923 2.8359 48 1 2.5545 1.6480 3.7067 49 1 1.4133 -0.4306 4.6073 50 1 2.6497 -1.4866 3.7368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255693702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:55 Heat of formation + Delta-G solvation = 29.268262 kcal Electronic energy + Delta-G solvation = -29512.534005 eV Core-core repulsion = 25507.693782 eV Total energy + Delta-G solvation = -4004.840223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.94202 -39.20474 -38.53573 -36.59509 -35.90390 -33.56793 -32.96450 -32.07454 -30.65761 -30.06344 -28.23817 -26.56439 -26.44043 -25.32403 -22.98429 -22.61362 -21.81295 -21.67566 -20.79734 -19.85460 -18.98306 -17.87837 -17.31761 -17.09477 -16.55222 -16.06780 -15.36590 -15.23695 -14.69108 -14.55178 -14.42268 -14.38276 -13.99564 -13.66660 -13.47034 -13.39882 -13.24985 -12.98013 -12.83231 -12.68500 -12.48952 -12.45067 -12.10935 -11.95576 -11.86012 -11.65458 -11.59415 -11.29685 -11.03373 -10.94300 -10.80234 -10.63554 -10.59826 -10.52299 -10.38041 -9.42213 -9.33923 -9.10176 -8.81384 -8.65834 -8.62174 -7.85806 -6.80278 -6.41779 -3.97587 1.33496 2.47942 2.76930 3.15903 3.18791 3.20079 3.28533 3.41676 3.57637 3.76384 4.00511 4.44973 4.54300 4.62259 4.69972 4.75153 4.83102 4.95073 4.97176 5.14099 5.21797 5.25725 5.28961 5.30814 5.33743 5.37484 5.40911 5.42184 5.54916 5.62234 5.72388 5.75338 5.79279 5.81406 5.82373 5.90791 5.91921 6.30447 6.40663 6.51975 6.59267 6.66707 6.72690 6.78114 6.85114 7.09306 7.16923 7.41893 7.51373 7.55304 7.86525 7.97897 8.05028 8.68617 9.03884 9.76522 10.76126 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002111 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.919876 B =13259.486801 C =14095.583138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 H 0.089 0.911 4 C 0.130 3.870 5 N -0.724 5.724 6 C 0.536 3.464 7 O -0.517 6.517 8 C -0.262 4.262 9 C 0.022 3.978 10 C -0.186 4.186 11 C 0.014 3.986 12 C -0.203 4.203 13 C 0.171 3.829 14 O -0.174 6.174 15 C -0.389 4.389 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.861 5.861 19 Si 0.942 3.058 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.251 4.251 24 C -0.043 4.043 25 N -0.505 5.505 26 C 0.017 3.983 27 C 0.001 3.999 28 C -0.164 4.164 29 C -0.175 4.175 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.270 0.730 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.032 0.968 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 15.441 21.981 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.037 4.037 3 H 0.107 0.893 4 C 0.005 3.995 5 N -0.377 5.377 6 C 0.326 3.674 7 O -0.394 6.394 8 C -0.283 4.283 9 C 0.003 3.997 10 C -0.187 4.187 11 C -0.005 4.005 12 C -0.222 4.222 13 C 0.116 3.884 14 O -0.076 6.076 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.270 4.270 24 C -0.061 4.061 25 N -0.228 5.228 26 C -0.130 4.130 27 C -0.108 4.108 28 C -0.201 4.201 29 C -0.213 4.213 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.143 0.857 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.050 0.950 46 H 0.110 0.890 47 H 0.119 0.881 48 H 0.110 0.890 49 H 0.111 0.889 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.487 14.736 21.164 25.832 hybrid contribution -0.534 0.465 -0.410 0.818 sum 0.953 15.202 20.754 25.744 Atomic orbital electron populations 1.22387 0.96442 1.02957 1.02683 1.21956 0.93525 0.98624 0.89589 0.89272 1.21293 0.81403 1.00711 0.96065 1.45801 1.06743 1.61365 1.23829 1.18496 0.88436 0.78131 0.82369 1.90994 1.69920 1.46127 1.32333 1.22609 0.93388 1.08325 1.03991 1.22312 0.98265 0.88875 0.90267 1.18291 1.02848 1.04088 0.93487 1.20429 0.91016 0.91632 0.97396 1.19995 1.04649 1.06342 0.91254 1.19519 0.90065 0.88292 0.90518 1.83907 1.55297 1.50963 1.17472 1.21337 1.17982 1.28472 0.78773 0.88979 1.25317 0.95300 0.95790 1.00193 1.70016 1.18869 1.25480 1.35218 0.85773 0.78564 0.78682 0.80374 1.19474 1.20296 1.19473 1.20944 1.01580 1.03948 1.00540 1.20742 0.97197 0.95964 0.92226 1.61987 1.58436 1.02137 1.00285 1.22475 0.98298 0.89101 1.03142 1.22484 0.97478 1.02474 0.88355 1.23062 0.98241 0.96247 1.02600 1.23051 1.03952 0.98496 0.95777 0.92131 0.91388 0.91694 0.91535 0.91243 0.76376 0.86260 0.86206 0.88132 0.86943 0.91966 0.85711 0.87660 0.90621 0.91377 0.94958 0.89024 0.88124 0.88973 0.88871 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 8.58 37.16 0.32 -1.03 16 2 C 0.07 0.57 2.51 -67.72 -0.17 0.40 16 3 H 0.09 0.68 8.13 -51.92 -0.42 0.26 16 4 C 0.13 1.41 4.69 -4.04 -0.02 1.39 16 5 N -0.72 -8.26 5.38 -61.75 -0.33 -8.59 16 6 C 0.54 8.08 6.77 -13.04 -0.09 8.00 16 7 O -0.52 -10.26 12.18 5.17 0.06 -10.19 16 8 C -0.26 -3.43 9.90 -37.51 -0.37 -3.80 16 9 C 0.02 0.33 9.80 -37.19 -0.36 -0.04 16 10 C -0.19 -3.53 4.54 -105.02 -0.48 -4.00 16 11 C 0.01 0.28 6.60 -39.15 -0.26 0.02 16 12 C -0.20 -4.76 9.97 -39.47 -0.39 -5.15 16 13 C 0.17 4.42 6.66 -38.89 -0.26 4.16 16 14 O -0.17 -5.19 9.74 0.73 0.01 -5.18 16 15 C -0.39 -11.25 9.48 30.91 0.29 -10.96 16 16 H 0.09 2.46 5.18 -52.49 -0.27 2.19 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 19 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.25 -5.84 9.14 -39.47 -0.36 -6.20 16 24 C -0.04 -0.85 9.78 -39.15 -0.38 -1.24 16 25 N -0.50 -3.89 4.34 -226.91 -0.98 -4.87 16 26 C 0.02 0.14 8.67 60.07 0.52 0.66 16 27 C 0.00 0.01 5.04 -67.71 -0.34 -0.34 16 28 C -0.16 -0.98 10.46 -26.73 -0.28 -1.26 16 29 C -0.18 -1.06 9.72 -26.73 -0.26 -1.32 16 30 H 0.06 0.39 6.35 -51.92 -0.33 0.06 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 6.38 -51.93 -0.33 0.18 16 33 H 0.07 0.83 6.70 -51.93 -0.35 0.48 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 3.75 8.12 -40.82 -0.33 3.42 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.10 1.88 7.02 -52.49 -0.37 1.51 16 39 H 0.11 2.57 8.06 -52.48 -0.42 2.15 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.13 2.87 5.62 -52.48 -0.29 2.57 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 44 H 0.07 0.53 6.76 -51.93 -0.35 0.17 16 45 H 0.03 0.26 6.28 -51.93 -0.33 -0.07 16 46 H 0.09 0.60 6.27 -51.93 -0.33 0.27 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.10 0.65 7.25 -51.93 -0.38 0.27 16 LS Contribution 401.74 15.07 6.05 6.05 Total: -1.00 -33.49 401.74 -9.80 -43.29 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.35 Total: 8.27 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.99 Total: -19.71 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.56 Total: -38.52 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.07 Total: -15.37 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.49 -9.80 -43.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255693702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.559 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds