Wall clock time and date at job start Wed Apr 1 2020 02:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47354 * 2 1 4 4 C 1.52998 * 109.47094 * 239.99881 * 2 1 3 5 5 N 1.46501 * 109.46945 * 184.99796 * 4 2 1 6 6 C 1.34780 * 119.99779 * 179.97438 * 5 4 2 7 7 O 1.21723 * 120.00044 * 0.02562 * 6 5 4 8 8 C 1.46256 * 120.00094 * 180.02562 * 6 5 4 9 9 C 1.35017 * 120.00241 * 173.20946 * 8 6 5 10 10 C 1.46966 * 119.99766 * 348.69003 * 9 8 6 11 11 C 1.40019 * 120.10161 * 316.39899 * 10 9 8 12 12 C 1.37600 * 119.89472 * 179.69633 * 11 10 9 13 13 C 1.39172 * 120.10338 * 0.60334 * 12 11 10 14 14 O 1.35568 * 119.89834 * 179.69358 * 13 12 11 15 15 C 1.34788 * 116.99752 * 174.34082 * 14 13 12 16 16 H 1.07990 * 120.00222 * 5.06233 * 15 14 13 17 17 C 1.38719 * 119.99773 * 185.06327 * 15 14 13 18 18 N 1.31509 * 120.00002 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46759 * 59.99689 * 19 17 15 21 21 H 1.48495 * 109.47180 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46838 * 299.99819 * 19 17 15 23 23 C 1.39174 * 120.20260 * 359.67915 * 13 12 11 24 24 C 1.37596 * 120.10045 * 0.02562 * 23 13 12 25 25 N 1.46897 * 109.47376 * 119.99781 * 2 1 3 26 26 C 1.46906 * 110.99949 * 58.95151 * 25 2 1 27 27 C 1.46900 * 110.99932 * 295.00097 * 25 2 1 28 28 C 1.53000 * 117.50006 * 248.61573 * 27 25 2 29 29 C 1.52995 * 60.00274 * 252.51063 * 28 27 25 30 30 H 1.09008 * 109.47000 * 299.99961 * 1 2 3 31 31 H 1.08997 * 109.47147 * 59.99941 * 1 2 3 32 32 H 1.08996 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47170 * 304.99854 * 4 2 1 34 34 H 1.09007 * 109.47031 * 65.00325 * 4 2 1 35 35 H 0.97001 * 120.00275 * 0.02562 * 5 4 2 36 36 H 1.07995 * 119.99716 * 353.22066 * 8 6 5 37 37 H 1.08002 * 120.00386 * 168.68385 * 9 8 6 38 38 H 1.07999 * 120.05207 * 0.02562 * 11 10 9 39 39 H 1.08006 * 119.94794 * 180.27715 * 12 11 10 40 40 H 0.97003 * 120.00081 * 180.02562 * 18 17 15 41 41 H 1.08007 * 119.94936 * 180.02562 * 23 13 12 42 42 H 1.08002 * 120.04775 * 180.02562 * 24 23 13 43 43 H 1.08997 * 109.46739 * 60.00218 * 26 25 2 44 44 H 1.08998 * 109.46971 * 180.02562 * 26 25 2 45 45 H 1.08998 * 109.47101 * 300.00195 * 26 25 2 46 46 H 1.08998 * 115.55463 * 34.33027 * 27 25 2 47 47 H 1.09006 * 117.49579 * 0.02562 * 28 27 25 48 48 H 1.09003 * 117.50079 * 145.02139 * 28 27 25 49 49 H 1.08997 * 117.50138 * 252.50812 * 29 28 27 50 50 H 1.09007 * 117.49833 * 107.49025 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.1730 -1.4292 -2.1907 7 8 3.5677 -1.8859 -3.1429 8 6 5.6305 -1.5346 -2.1319 9 6 6.2933 -2.2558 -3.0611 10 6 5.5509 -3.1328 -3.9775 11 6 4.5181 -3.9436 -3.4912 12 6 3.8217 -4.7584 -4.3540 13 6 4.1508 -4.7869 -5.7059 14 8 3.4661 -5.5959 -6.5512 15 6 3.7527 -5.4920 -7.8642 16 1 4.5548 -4.8477 -8.1924 17 6 3.0173 -6.2126 -8.7937 18 7 2.0408 -6.9975 -8.3939 19 14 3.4139 -6.0681 -10.6134 20 1 4.8146 -6.5009 -10.8505 21 1 2.4907 -6.9327 -11.3915 22 1 3.2523 -4.6564 -11.0447 23 6 5.1806 -3.9872 -6.1928 24 6 5.8784 -3.1647 -5.3385 25 7 2.0197 -0.6924 1.1994 26 6 1.5283 -2.0761 1.2460 27 6 1.6487 0.0393 2.4180 28 6 2.7747 0.7001 3.2156 29 6 2.0864 -0.5536 3.7589 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7198 -1.2951 34 1 1.7516 -0.1583 -2.1370 35 1 3.9823 -0.4627 -0.4315 36 1 6.1767 -1.0357 -1.3451 37 1 7.3689 -2.1883 -3.1311 38 1 4.2649 -3.9254 -2.4414 39 1 3.0219 -5.3808 -3.9805 40 1 1.5267 -7.5018 -9.0439 41 1 5.4323 -4.0122 -7.2428 42 1 6.6771 -2.5442 -5.7174 43 1 1.8762 -2.6150 0.3648 44 1 1.9053 -2.5654 2.1440 45 1 0.4385 -2.0742 1.2640 46 1 0.6874 0.5520 2.3843 47 1 3.7908 0.5923 2.8359 48 1 2.5545 1.6480 3.7067 49 1 1.4133 -0.4306 4.6073 50 1 2.6497 -1.4866 3.7368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255693702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:54 Heat of formation + Delta-G solvation = 6.771261 kcal Electronic energy + Delta-G solvation = -29513.509548 eV Core-core repulsion = 25507.693782 eV Total energy + Delta-G solvation = -4005.815767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.12762 -40.52015 -39.80047 -38.17923 -36.76208 -34.62485 -34.52429 -33.87586 -31.80709 -31.38034 -29.73416 -27.74558 -27.20293 -27.08892 -24.27891 -23.46327 -23.09682 -22.59183 -22.20208 -20.65956 -20.18200 -19.70243 -18.83211 -18.00138 -17.93013 -17.06565 -16.39142 -16.32613 -16.20607 -15.98883 -15.63415 -15.56653 -15.44305 -14.97798 -14.95141 -14.52601 -14.48641 -14.19509 -14.04172 -13.76151 -13.64174 -13.56242 -13.45137 -13.08834 -13.03144 -12.77435 -12.57055 -12.42578 -12.35904 -12.21900 -12.15142 -12.12275 -11.74400 -11.30507 -11.23110 -11.03105 -10.94065 -10.63294 -10.36202 -9.94955 -9.53042 -9.27294 -8.53518 -8.47540 -6.15067 0.02986 0.73000 1.15436 1.33280 1.47181 1.50605 2.17626 2.41833 2.54421 2.80502 2.87906 2.94223 3.21933 3.53658 3.73089 3.97477 4.04499 4.06714 4.10892 4.14330 4.17919 4.21569 4.27389 4.31614 4.33609 4.55794 4.56759 4.61497 4.63114 4.73107 4.75963 4.78556 4.80882 4.86611 5.04594 5.06266 5.07181 5.11067 5.17065 5.24742 5.28000 5.29509 5.37582 5.48980 5.61694 5.69703 5.73760 5.87701 6.00529 6.03016 6.16296 6.26651 6.83400 6.95877 7.54067 7.78400 8.75220 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002111 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.919876 B =13259.486801 C =14095.583138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.083 3.917 3 H 0.102 0.898 4 C 0.130 3.870 5 N -0.702 5.702 6 C 0.523 3.477 7 O -0.573 6.573 8 C -0.228 4.228 9 C 0.001 3.999 10 C -0.158 4.158 11 C 0.016 3.984 12 C -0.221 4.221 13 C 0.126 3.874 14 O -0.231 6.231 15 C -0.415 4.415 16 H 0.102 0.898 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.022 2.978 20 H -0.254 1.254 21 H -0.270 1.270 22 H -0.259 1.259 23 C -0.259 4.259 24 C -0.049 4.049 25 N -0.505 5.505 26 C 0.021 3.979 27 C -0.009 4.009 28 C -0.157 4.157 29 C -0.174 4.174 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.417 0.583 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.148 0.852 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.555 19.045 24.403 31.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.120 0.880 4 C 0.006 3.994 5 N -0.354 5.354 6 C 0.313 3.687 7 O -0.454 6.454 8 C -0.248 4.248 9 C -0.018 4.018 10 C -0.159 4.159 11 C -0.002 4.002 12 C -0.241 4.241 13 C 0.075 3.925 14 O -0.138 6.138 15 C -0.491 4.491 16 H 0.120 0.880 17 C -0.223 4.223 18 N -0.559 5.559 19 Si 0.841 3.159 20 H -0.178 1.178 21 H -0.194 1.194 22 H -0.183 1.183 23 C -0.278 4.278 24 C -0.067 4.067 25 N -0.229 5.229 26 C -0.127 4.127 27 C -0.118 4.118 28 C -0.194 4.194 29 C -0.211 4.211 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.254 0.746 36 H 0.188 0.812 37 H 0.185 0.815 38 H 0.135 0.865 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.166 0.834 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.051 0.949 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.285 18.405 23.691 30.304 hybrid contribution -1.311 -0.342 -0.665 1.509 sum 2.974 18.062 23.026 29.416 Atomic orbital electron populations 1.22359 0.95911 1.02538 1.03379 1.21832 0.93832 0.98556 0.88363 0.88028 1.21288 0.81040 0.99809 0.97310 1.45668 1.07026 1.59524 1.23217 1.19103 0.89695 0.77720 0.82146 1.91001 1.71206 1.48553 1.34671 1.23056 0.91959 1.06386 1.03401 1.22554 1.00289 0.89250 0.89717 1.18871 1.00687 1.02248 0.94058 1.20638 0.91048 0.90869 0.97655 1.20167 1.05358 1.07325 0.91240 1.19998 0.91540 0.89845 0.91071 1.83875 1.57891 1.53817 1.18192 1.21846 1.18803 1.29287 0.79205 0.88037 1.26690 0.94867 0.95033 1.05676 1.70175 1.20988 1.27614 1.37150 0.84611 0.79052 0.79198 0.73084 1.17806 1.19442 1.18292 1.21091 1.01382 1.04319 1.01039 1.21186 0.97691 0.95509 0.92271 1.61977 1.58373 1.01816 1.00686 1.22399 0.98353 0.89537 1.02399 1.22547 0.98186 1.03018 0.88009 1.23109 0.97707 0.96713 1.01919 1.23087 1.04005 0.98402 0.95645 0.90739 0.91380 0.92701 0.93577 0.92522 0.74601 0.81170 0.81453 0.86504 0.88238 0.91784 0.86201 0.83426 0.92672 0.90729 0.94905 0.88548 0.88369 0.87739 0.87870 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 8.58 71.98 0.62 -1.81 16 2 C 0.08 1.17 2.51 44.91 0.11 1.28 16 3 H 0.10 1.25 8.13 -2.38 -0.02 1.23 16 4 C 0.13 2.73 4.69 86.38 0.40 3.14 16 5 N -0.70 -14.21 5.38 -467.49 -2.52 -16.73 16 6 C 0.52 14.36 6.77 86.33 0.58 14.95 16 7 O -0.57 -22.41 12.18 -4.42 -0.05 -22.46 16 8 C -0.23 -4.71 9.90 23.61 0.23 -4.48 16 9 C 0.00 0.03 9.80 23.82 0.23 0.26 16 10 C -0.16 -5.63 4.54 -20.13 -0.09 -5.72 16 11 C 0.02 0.66 6.60 22.55 0.15 0.81 16 12 C -0.22 -11.06 9.97 22.34 0.22 -10.84 16 13 C 0.13 7.00 6.66 22.72 0.15 7.15 16 14 O -0.23 -15.04 9.74 -20.32 -0.20 -15.24 16 15 C -0.42 -25.65 9.48 67.94 0.64 -25.01 16 16 H 0.10 5.75 5.18 -2.92 -0.02 5.74 16 17 C -0.03 -1.51 5.49 84.86 0.47 -1.05 16 18 N -0.92 -59.01 13.67 21.62 0.30 -58.71 16 19 Si 1.02 44.68 29.55 68.60 2.03 46.71 16 20 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 23 C -0.26 -12.44 9.14 22.34 0.20 -12.24 16 24 C -0.05 -1.86 9.78 22.55 0.22 -1.64 16 25 N -0.50 -6.71 4.34 -871.80 -3.78 -10.49 16 26 C 0.02 0.33 8.67 127.69 1.11 1.43 16 27 C -0.01 -0.10 5.04 44.92 0.23 0.13 16 28 C -0.16 -1.38 10.46 30.59 0.32 -1.06 16 29 C -0.17 -1.65 9.72 30.59 0.30 -1.36 16 30 H 0.07 0.80 6.35 -2.38 -0.02 0.78 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.85 6.38 -2.39 -0.02 0.83 16 33 H 0.05 1.18 6.70 -2.39 -0.02 1.17 16 34 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.42 6.10 8.12 -92.71 -0.75 5.35 16 36 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.12 4.31 7.02 -2.91 -0.02 4.29 16 39 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 40 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 41 H 0.12 5.74 5.62 -2.91 -0.02 5.72 16 42 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 43 H 0.05 1.09 6.44 -2.39 -0.02 1.07 16 44 H 0.07 1.06 6.76 -2.39 -0.02 1.04 16 45 H 0.03 0.50 6.28 -2.39 -0.02 0.49 16 46 H 0.10 0.98 6.27 -2.39 -0.01 0.96 16 47 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 48 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.09 1.01 7.25 -2.38 -0.02 0.99 16 Total: -1.00 -82.00 401.74 2.09 -79.91 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.21 Total: 33.06 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 6.10 Total: -36.04 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -6.00 Total: -85.94 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.25 Total: -37.70 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -82.00 2.09 -79.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255693702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.683 kcal (2) G-P(sol) polarization free energy of solvation -81.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds